View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_64 (Length: 240)
Name: NF5492_low_64
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_64 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 343007 - 343216
Alignment:
| Q |
18 |
aagaaatatctgcagttccttcaagttattgtagtggtcaacttgatccacgaaaagtactatttcatcattaattaggaacttttgttgcatcaatggt |
117 |
Q |
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| T |
343007 |
aagaaatatctgcagttccttcaagttattgtagtggtcaacttgatccacgaaaagtactatttcatcatta----ggaacttttgttgcatcaatggt |
343102 |
T |
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| Q |
118 |
gatgtcaatcatttcttccccaatattgcttcaagttcatcattaacaaaaatgtctatatcattttagcctttagtgtgttcaacttcttgagaaaaga |
217 |
Q |
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| T |
343103 |
gatgtc---------ttccccaatattgcttcaagttcatcattaacaaaaatatctatatcattttagcctttagtgtgttcaacttcttgagaaaaga |
343193 |
T |
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| Q |
218 |
atttgattgattattttatattt |
240 |
Q |
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| T |
343194 |
acttgattgattattgtatattt |
343216 |
T |
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