View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_69 (Length: 226)
Name: NF5492_low_69
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_69 |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0184 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 448 - 638
Alignment:
| Q |
17 |
aatataagtcgtaaatatataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
116 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
448 |
aatataagtcgtaaatacataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
547 |
T |
|
| Q |
117 |
ctatctaataaatttgaatacgattcaaaagttcgccgaaactggtgcttttctgatctctaattggttatttgtgttgtgatatctagtt |
207 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
548 |
ctatctaataattttgaatacgattcaaaagttcaccgaaactggtgcttttctgatctctaattggttatttgtgtcgtgatttctagtt |
638 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 16496144 - 16495954
Alignment:
| Q |
17 |
aatataagtcgtaaatatataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16496144 |
aatataagtcgtaaatacataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
16496045 |
T |
|
| Q |
117 |
ctatctaataaatttgaatacgattcaaaagttcgccgaaactggtgcttttctgatctctaattggttatttgtgttgtgatatctagtt |
207 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
16496044 |
ctatctaataattttgaatacgattcaaaagttcaccgaaactggtgcttttctgatctctaattggttatttgtgtcgtgatttctagtt |
16495954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 36315295 - 36315105
Alignment:
| Q |
17 |
aatataagtcgtaaatatataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36315295 |
aatataagtcgtaaatacataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
36315196 |
T |
|
| Q |
117 |
ctatctaataaatttgaatacgattcaaaagttcgccgaaactggtgcttttctgatctctaattggttatttgtgttgtgatatctagtt |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
36315195 |
ctatctaataattttgaatacgattcaaaagttcaccgaaactggtgcttttctgatctctaattggttatttgtgtcgtgatttctagtt |
36315105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 14294929 - 14295119
Alignment:
| Q |
17 |
aatataagtcgtaaatatataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14294929 |
aatataagtcgtaaatacataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
14295028 |
T |
|
| Q |
117 |
ctatctaataaatttgaatacgattcaaaagttcgccgaaactggtgcttttctgatctctaattggttatttgtgttgtgatatctagtt |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
14295029 |
ctatctaataattttgaatacgattcaaaagttcaccgaaactggtgcttttctgatctctaattggttatttgtgtcgtgatttctagtt |
14295119 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 51131307 - 51131117
Alignment:
| Q |
17 |
aatataagtcgtaaatatataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51131307 |
aatataagtcgtaaatacataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcga |
51131208 |
T |
|
| Q |
117 |
ctatctaataaatttgaatacgattcaaaagttcgccgaaactggtgcttttctgatctctaattggttatttgtgttgtgatatctagtt |
207 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
51131207 |
ctatctaataattttgaatacaattcaaaagttcaccgaaactggtgcttttctgatctctaattggttatttgtgtcgtgatttctagtt |
51131117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 31079 - 30892
Alignment:
| Q |
17 |
aatataagtcgtaaatatataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31079 |
aatataagtcgtaaatatataagttgttttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcag |
30980 |
T |
|
| Q |
117 |
ctatctaataaatttgaatacgattcaaaagttcgccgaaactggtgcttttctgatctctaattggttatttgtgttgtgatatcta |
204 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
30979 |
ctatctaataattttgaatacgattcaaaagttcaccgaaaccggtgcttttctgatctctaattggttatttgtgttgtgatttcta |
30892 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 28195402 - 28195240
Alignment:
| Q |
45 |
ttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcggctatctaataaatttgaatacgattcaa |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28195402 |
ttatatttgaaattcgggagagatgctgcataggaatattattgaatcctagttttgataaattaatttcggctatctaataattttgaatacgattcaa |
28195303 |
T |
|
| Q |
145 |
aagttcgccgaaactggtgcttttctgatctctaattggttatttgtgttgtgatatctagtt |
207 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28195302 |
aagttcaccgaaagcggtgcttttctgatctctaattggttatttgtgttgtgatttctagtt |
28195240 |
T |
|
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