View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_8 (Length: 538)
Name: NF5492_low_8
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Original strand, 24291158 - 24291665
Alignment:
| Q |
14 |
tactgatcttgtcaaagttagacttcaagcggaagggaaattgcctccaggcgtgcccaggcgatacactggatcgttgaatgcatattcaacaattatg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24291158 |
tactgatcttgtcaaagttagacttcaagcggaagggaaattgcctccaggcgtgcccaggcgatacactggatcgttgaatgcatattcaacaattatg |
24291257 |
T |
|
| Q |
114 |
agacaggtatacttctttaaccttctatggtttttgaaagataagatgtggtaagtcannnnnnn-ggctctaaactcgtactaataagttttgttaatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24291258 |
agacaggtatacttctttaaccttctatggtttttgaaagataagatgtggtaagtcattttttttggctctaaactcgtactaataagttttgttaatc |
24291357 |
T |
|
| Q |
213 |
tgtatcaaacaaacaggaaggaatcggagctctttggactggaattggccccaatgttgcaagaaatgctatcattaatgctgctgagctagccagctac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24291358 |
tgtatcaaacaaacaggaaggaatcggagctctttggactggaattggccccaatgttgcaagaaatgctatcattaatgctgctgagctagccagctac |
24291457 |
T |
|
| Q |
313 |
gatcaagtgaaacaggtaatgtgaaagatactaaactgcactttcaattaaaattttattatttctctttcgtaattttaataacctgatcttttttact |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24291458 |
gatcaagtgaaacaggtaatgtgaaagatactaaactgcactttcaattaaaattttattatttctctttcgtaattttaataacctgatcttttttact |
24291557 |
T |
|
| Q |
413 |
gcagaccattttgaaaattccaggattcactgataatgttgtcacacatcttctttctggtcttggggcaggtttctttgcagtctgtattggctctcca |
512 |
Q |
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| T |
24291558 |
gcagaccattttgaaaattccaggattcactgataatgttgtcacacatcttctttctggtcttggggcaggtttctttgcagtctgtattggctctcca |
24291657 |
T |
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| Q |
513 |
gttgatgt |
520 |
Q |
| |
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|||||||| |
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| T |
24291658 |
gttgatgt |
24291665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 5773587 - 5773481
Alignment:
| Q |
15 |
actgatcttgtcaaagttagacttcaagcggaagggaaattgcctccaggcgtgcccaggcgatacactggatcgttgaatgcatattcaacaattatga |
114 |
Q |
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||||||||||||||||| ||||||||||| ||||| ||||| ||||| || || |||||||| ||| ||||||| |||||||| ||||| |||| ||| |
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| T |
5773587 |
actgatcttgtcaaagtaagacttcaagcagaaggaaaattacctcctggtgttcccaggcgctactctggatctttgaatgcttattcgtcaatcgtga |
5773488 |
T |
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| Q |
115 |
gacaggt |
121 |
Q |
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| T |
5773487 |
gacaggt |
5773481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 520
Target Start/End: Complemental strand, 5773208 - 5773100
Alignment:
| Q |
412 |
tgcagaccattttgaaaattccaggattcactgataatgttgtcacacatcttctttctggtcttggggcaggtttctttgcagtctgtattggctctcc |
511 |
Q |
| |
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||||||| |||||||||||||| |||||||| || |||||||| || ||||| || |||| ||||| ||||| || || || |||||||| ||||| || |
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| T |
5773208 |
tgcagactattttgaaaattccgggattcaccgacaatgttgtaactcatctctttgctggccttggagcagggtttttcgctgtctgtatcggctcccc |
5773109 |
T |
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| Q |
512 |
agttgatgt |
520 |
Q |
| |
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|||||||| |
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| T |
5773108 |
ggttgatgt |
5773100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 5773349 - 5773291
Alignment:
| Q |
274 |
agaaatgctatcattaatgctgctgagctagccagctacgatcaagtgaaacaggtaat |
332 |
Q |
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||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
5773349 |
agaaatggtattatcaacgctgctgaactagctagctatgatcaagtgaaacaggtaat |
5773291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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