View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5493-Insertion-1 (Length: 869)

Name: NF5493-Insertion-1
Description: NF5493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5493-Insertion-1
NF5493-Insertion-1
[»] chr2 (9 HSPs)
chr2 (642-869)||(28488357-28488580)
chr2 (642-847)||(28445771-28445973)
chr2 (693-869)||(28466596-28466769)
chr2 (8-146)||(28488786-28488927)
chr2 (433-558)||(28488664-28488789)
chr2 (654-815)||(28438353-28438512)
chr2 (197-276)||(28467155-28467234)
chr2 (490-550)||(28466901-28466961)
chr2 (423-469)||(28467021-28467067)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 642 - 869
Target Start/End: Complemental strand, 28488580 - 28488357
Alignment:
Q  642 cccttcaaaagaaactaattctaattacaacttacagaaccatacagataggggacttgggggaactgcaacttcaacaattccttctaacatcagtaaa 741  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28488580 cccttgaaaagaaactaattctaattacaacttacagaaccatacagataggg-acttgggggaactgcaacttcaacaattccttctaacatcagtaaa 28488482  T
Q  742 acattcttcattgttggcctagagagaaggatcttcttgaatgcaccaaatcgcaatcatcacaaacttttccaaggccatcatgtcattggccagcctc 841  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||| |||||||||    
T  28488481 acattcttcattgttggccta-agagaaggatcttcttgaatgcaccaaatagcaatcatcacaaacttttccaagcacatcatgtcatt-gccagcctc 28488384  T
Q  842 attatcatgttctaggaagaccgtcaag 869  Q
    |||||||| ||||| |||||||||||||    
T  28488383 attatcattttcta-gaagaccgtcaag 28488357  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 642 - 847
Target Start/End: Complemental strand, 28445973 - 28445771
Alignment:
Q  642 cccttcaaaagaaactaattctaattacaacttacagaaccatacagataggggacttgggggaactgcaacttcaacaattccttctaacatcagtaaa 741  Q
    |||||||||||||||  ||| |||||| |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  28445973 cccttcaaaagaaacagattttaattagaacttacagaaccatatagataggg-acttgggggagctgcaacttcaacaattccttctaacatcagtaaa 28445875  T
Q  742 acattcttcattgttggcctagagagaaggatcttcttgaatgcaccaaatcgcaatcatcacaaacttttccaaggccatcatgtcattggccagcctc 841  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||| || ||||||    
T  28445874 accttcttcattgttggccta-agagaaggatcttcttgaatgcaccaaatagcaatcatcacaaacttttccaagcacatcatgtcatt-gctagcctc 28445777  T
Q  842 attatc 847  Q
    ||||||    
T  28445776 attatc 28445771  T

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Target: chr2; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 693 - 869
Target Start/End: Complemental strand, 28466769 - 28466596
Alignment:
Q  693 gggacttgggggaactgcaacttcaacaattccttctaacatcagtaaaacattcttcattgttggcctagagagaaggatcttcttgaatgcaccaaat 792  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28466769 gggacttgggggaactgcaacttcaacaattccttctaacatcagtaaaacattcttcattgttggccta-agagaaggatcttcttgaatgcaccaaat 28466671  T
Q  793 cgcaatcatcacaaacttttccaaggccatcatgtcattggccagcctcattatcatgttctaggaagaccgtcaag 869  Q
     ||||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  28466670 agcaatcatcacaaacttttccaagcacatcatgtcatt-gccagcctcattatcattttcta-gaagaccgtcaag 28466596  T

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Target: chr2; HSP #4
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 28488927 - 28488786
Alignment:
Q  8 acaatgtccttatactattcgattttgaaggtgttaaattaaaaagtgaaaacccaagtaacacttcacgagctagtagggatcaaaaaatgttaaattg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28488927 acaatgtccttatactattcgattttgaaggtgttaaattaaaaagtgaaaacccaagtaacacttcacgagctagtagggatcaaaaaatgttaaaatg 28488828  T
Q  108 tcccaagagcaca---agcaacttgtatgaaactgctatagt 146  Q
    |||||||||||||   ||||||||||||| ||||||||||||    
T  28488827 tcccaagagcacacttagcaacttgtatggaactgctatagt 28488786  T

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Target: chr2; HSP #5
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 433 - 558
Target Start/End: Complemental strand, 28488789 - 28488664
Alignment:
Q  433 tagttttgacattttcaccatgtaatatttgtttggatcaatagaaaacttatttcttaattgttcttgtgctggtagcatacaataaacttctcattgt 532  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  28488789 tagtttggacattttcaccatgtaatatttgtttggatcaatagaaaacttatttcttaattgttcttgtgctgttaccatacaataaacttctcattgt 28488690  T
Q  533 tcataaatacaaccaattgctttagc 558  Q
    | ||||||||||||||||||||||||    
T  28488689 tgataaatacaaccaattgctttagc 28488664  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 654 - 815
Target Start/End: Complemental strand, 28438512 - 28438353
Alignment:
Q  654 aactaattctaattacaacttacagaaccatacagataggggacttgggggaactgcaacttcaacaattccttctaacatcagtaaaacattcttcatt 753  Q
    |||||||| ||||| ||||| | ||||||||| || ||||| |||||| |||| |||||||||||||||  |||||| |||  | ||||| |||||||||    
T  28438512 aactaattttaatttcaactaaaagaaccatagaggtaggg-acttggaggaattgcaacttcaacaatctcttctagcatttgcaaaaccttcttcatt 28438414  T
Q  754 gttggcctagagagaaggatcttcttgaatgcaccaaatcgcaatcatcacaaacttttcca 815  Q
    ||||| ||| ||||| |||||||||||| | |||||||| |||||||| ||||| |||||||    
T  28438413 gttggtcta-agagatggatcttcttgagtacaccaaatagcaatcatgacaaatttttcca 28438353  T

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Target: chr2; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 28467234 - 28467155
Alignment:
Q  197 tatagctttgaatacatcttttgctgatgaaaatgtcactttaggaaatgaagctgtaagaaaatcttgtgaacgtcgca 276  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||| |||||    
T  28467234 tatagttttgaatacaccttttgctgatgaaaatgtcactttaggaaatgaagctgtcggaaaatcttctgaacatcgca 28467155  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 550
Target Start/End: Complemental strand, 28466961 - 28466901
Alignment:
Q  490 taattgttcttgtgctggtagcatacaataaacttctcattgttcataaatacaaccaatt 550  Q
    |||||||| ||||||  ||| |||||||||||||| |||||||| ||||||||||||||||    
T  28466961 taattgttgttgtgcatgtaccatacaataaacttttcattgttaataaatacaaccaatt 28466901  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 469
Target Start/End: Complemental strand, 28467067 - 28467021
Alignment:
Q  423 agagtttctgtagttttgacattttcaccatgtaatatttgtttgga 469  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||    
T  28467067 agagtttatctagttttgacattttcactatgtaatatttgtttgga 28467021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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