View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5493_high_4 (Length: 388)

Name: NF5493_high_4
Description: NF5493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5493_high_4
NF5493_high_4
[»] chr8 (3 HSPs)
chr8 (14-383)||(43743802-43744171)
chr8 (77-374)||(43445734-43446031)
chr8 (14-73)||(43441265-43441324)
[»] chr5 (1 HSPs)
chr5 (13-374)||(28218903-28219264)
[»] chr7 (11 HSPs)
chr7 (19-374)||(3146258-3146613)
chr7 (14-374)||(8640520-8640881)
chr7 (14-374)||(8645866-8646226)
chr7 (20-224)||(8586678-8586885)
chr7 (26-224)||(8615710-8615911)
chr7 (179-283)||(13334278-13334382)
chr7 (134-228)||(8658469-8658563)
chr7 (134-239)||(1300564-1300669)
chr7 (17-89)||(6788501-6788573)
chr7 (77-360)||(17266985-17267268)
chr7 (254-360)||(6788738-6788844)
[»] chr6 (2 HSPs)
chr6 (17-284)||(28910363-28910633)
chr6 (14-216)||(12488636-12488837)
[»] chr1 (4 HSPs)
chr1 (77-318)||(15594087-15594328)
chr1 (201-374)||(34467610-34467783)
chr1 (77-239)||(4679508-4679670)
chr1 (146-374)||(29464970-29465198)
[»] chr2 (5 HSPs)
chr2 (132-239)||(16662952-16663059)
chr2 (253-374)||(43624637-43624758)
chr2 (14-121)||(43624441-43624548)
chr2 (77-219)||(16658497-16658636)
chr2 (17-60)||(16663134-16663177)
[»] chr4 (1 HSPs)
chr4 (127-361)||(30774351-30774585)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 383
Target Start/End: Original strand, 43743802 - 43744171
Alignment:
Q  14 aatatactctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactgtcaagcaaatttgtggcctttgtaattgcagagttga 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |  ||||| |||  ||| ||||||||||||| |||||||||||||||  |||    
T  43743802 aatacactctcaagctccttcagatgattttcaagaacatctatttcactctgctgattatcgtcgagcaaatttgtggtctttgtaattgcagaaatga 43743901  T
Q  114 tcttgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacatt 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||    
T  43743902 tcttgtcagttacttgagaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacatt 43744001  T
Q  214 ggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttcttcaatttcttgagttgacaatctttctctgttattagtt 313  Q
    ||| ||||| | ||| |||||||||||||  | |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  43744002 ggctttcctaagaaatttctcatctttaaagcggtaaccttcagcttccctaatcatttcttcaatttcttgagatgacaatctttctttgttattagtt 43744101  T
Q  314 attgtaatcccattcatactaccagtggatttttcattagcagaaacaattaagataccatattcttcga 383  Q
    ||||||||| |||||||||||||| ||||| | |||| |||||||||| ||||||| |||| ||| ||||    
T  43744102 attgtaatctcattcatactaccactggatctgtcataagcagaaacagttaagattccattttcatcga 43744171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 77 - 374
Target Start/End: Original strand, 43445734 - 43446031
Alignment:
Q  77 tcaagcaaatttgtggcctttgtaattgcagagttgatcttgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctca 176  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| | |||||||||    
T  43445734 tcaagcaaatttgtggtctttgtaattgcatagttgatcttgtcagttactttagacgagagctttaatttaatatccttattctttacaacattcctca 43445833  T
Q  177 acttgtaaa-cacaatcatctaatccattcattacattggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttctt 275  Q
    || |||||| | || ||||||||| |||||||||||||||||||||| | ||| ||||||| |||||  | |||||||||||||||||||||||||||||    
T  43445834 acctgtaaaacccattcatctaatgcattcattacattggccttcctaagaaatttctcat-tttaaagcggtaatcttcagcttctctaatcatttctt 43445932  T
Q  276 caatttcttgagttgacaatctttctctgttattagttattgtaatcccattcatactaccagtggatttttcattagcagaaacaattaagataccat 374  Q
    |||||||||||| |||||||| |||| |||||||  |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||    
T  43445933 caatttcttgagatgacaatcgttctttgttattttttattgtaatcccattcatactaccagtggatttgtcattagccgaaactattaagaaaccat 43446031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 43441265 - 43441324
Alignment:
Q  14 aatatactctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggtta 73  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  43441265 aatacactctcaagctccttcagatgattttcaagaacatctatttcactttgctggtta 43441324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 28218903 - 28219264
Alignment:
Q  13 caatatactctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactgtcaagcaaatttgtggcctttgtaattgcagagttg 112  Q
    |||||||||||  |||||||||||||||||||||||||||| |||||| |  | ||||||| | ||| | |||||||| ||||| |||||| ||||||||    
T  28218903 caatatactcttgagctccttcagatgattttcaagaacatgtatttcactcttctggttagtatcatggaaatttgttgccttcgtaatttcagagttg 28219002  T
Q  113 atcttgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacat 212  Q
    ||||||||| ||  || |||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||    
T  28219003 atcttgtcaatttttttagaagacagctgtaatctaatatccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacat 28219102  T
Q  213 tggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttcttcaatttcttgagttgacaatctttctctgttattagt 312  Q
    |||||||||||| ||| || |||||||||| || ||||||||||||||| ||||||||||||| |||||||||||  || ||||||||| || |||||||    
T  28219103 tggccttccttagaaatttttcatctttaaaacggtaatcttcagcttccctaatcatttctttaatttcttgagaagataatctttctttgctattagt 28219202  T
Q  313 tattgtaatcccattcatactaccagtggatttttcattagcagaaacaattaagataccat 374  Q
    ||||| |||| | |||||| |||||||||||||||||| ||||||||||| |||||||||||    
T  28219203 tattgcaatctccttcataataccagtggatttttcataagcagaaacaactaagataccat 28219264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 3146258 - 3146613
Alignment:
Q  19 actctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactgtcaagcaaatttgtggcctttgtaattgcagagttgatcttg 118  Q
    |||||||||||||||||| ||||||||||||||||||||||| |  |||||| |||| ||||| ||| ||||||||||||| |||||||| |||||||||    
T  3146258 actctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtactatcaagtaaacttgtggcctttgtgattgcagaattgatcttg 3146357  T
Q  119 tcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacattggcct 218  Q
    ||| || ||||||| ||||| ||||  || |||||||| ||||||| ||||||  ||| |||||||||||||| ||||||| ||||||||||||||||||    
T  3146358 tcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggcct 3146457  T
Q  219 tccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttcttcaatttcttgagttgacaatctttctctgttattagttattgt 318  Q
    |||||| ||| || ||||| | ||||| ||||| |||||||||| | ||||||| |  ||||||||| | ||||||||||||| ||| |||||||| |||    
T  3146458 tccttagaaatttttcatcctcaacacggtaattttcagcttctttgatcatttttataatttcttgggatgacaatctttctttgtcattagttactgt 3146557  T
Q  319 aatcccattcatactaccagtggatttttcattagcagaaacaattaagataccat 374  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  3146558 aatctcattcgtactaccagtggatttttcattagcagaaacaattaagatgccat 3146613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 8640881 - 8640520
Alignment:
Q  14 aatatactctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactgtcaagcaaatttgtggcctttgtaattgcagagttga 113  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| |  || | || || ||||||||||||||||||||| ||||||| |   ||||    
T  8640881 aatatactctcaagctccttcagatgattttccagaacatatatttcactttgtttgtcacagtcaagcaaatttgtggccttcgtaattgtatgattga 8640782  T
Q  114 tcttgtcagttactt-gagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacat 212  Q
    |||||||| || ||| ||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||||  ||||  |||||||||||||||| ||    
T  8640781 tcttgtcattttctttgagaagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaat 8640682  T
Q  213 tggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttcttcaatttcttgagttgacaatctttctctgttattagt 312  Q
    ||||||||||||  || |||||| ||| || || ||||| |||||| |||||| ||||||||| ||||| ||||| ||||||||||||| | | ||||||    
T  8640681 tggccttccttaggaatttctcagcttcaatacggtaattttcagcgtctctagtcatttctttaatttgttgagatgacaatctttctttatcattagt 8640582  T
Q  313 tattgtaatcccattcatactaccagtggatttttcattagcagaaacaattaagataccat 374  Q
    ||||| |||| || || || ||||||| || |||||| |||||||||  |||||||| ||||    
T  8640581 tattggaatctcagtcctattaccagtagacttttcactagcagaaatgattaagatgccat 8640520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 374
Target Start/End: Original strand, 8645866 - 8646226
Alignment:
Q  14 aatatactctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactgtcaagcaaatttgtggcctttgtaattgcagagttga 113  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||| |  || |  | ||||||||||| |||||||||||| |||||||||   ||||    
T  8645866 aatatactatcaagctccttcagatgattttccagaacatcaatttcactttgtttatcactgtcaagcagatttgtggccttcgtaattgcattattga 8645965  T
Q  114 tcttgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacatt 213  Q
    |||||||| || ||| ||| ||||| |||||||||||||||||  |||||||||| ||| ||| ||| ||||  ||||  ||||||||||||||||||||    
T  8645966 tcttgtcattttctttagatgagagatttaatttaacatccttcctctttagagctttcttcagcttataaatgcaatggtctaatccattcattacatt 8646065  T
Q  214 ggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttcttcaatttcttgagttgacaatctttctctgttattagtt 313  Q
    |||||||||||  || |||||||||| || || ||||| ||||||||||||| ||||||||| ||||| |||||  |||||||||||| | | |||||||    
T  8646066 ggccttccttaggaatttctcatcttcaatacggtaattttcagcttctctagtcatttctttaatttgttgagacgacaatctttctttttcattagtt 8646165  T
Q  314 attgtaatcccattcatactaccagtggatttttcattagcagaaacaattaagataccat 374  Q
    |||| |||| || || || ||||||| ||||||||| | |||||||| | |||||| ||||    
T  8646166 attggaatctcagtcctattaccagtagatttttcactcgcagaaacgactaagattccat 8646226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 8586885 - 8586678
Alignment:
Q  20 ctctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactgt---caagcaaatttgtggcctttgtaattgcagagttgatct 116  Q
    ||||||||||||||||||||||   ||||||||||||| ||    | ||||||| | |   ||||||||||||| ||| |||||||||||   |||||||    
T  8586885 ctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattcttatcaagcaaatttgtagccattgtaattgcatgattgatct 8586786  T
Q  117 tgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacattggc 216  Q
    | | |  |  ||||||||||  ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| || ||    
T  8586785 ttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaacttgtaaacacaatcatctaatgaattcattaccttagc 8586686  T
Q  217 cttcctta 224  Q
    ||||||||    
T  8586685 cttcctta 8586678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 8615710 - 8615911
Alignment:
Q  26 agctccttcagatgattttcaagaacatctatttcgccgtgctggtta---ctgtcaagcaaatttgtggcctttgtaattgcagagttgatcttgtcag 122  Q
    |||||||||||||||| ||| ||||| |||| ||| |  |||||||||   || |||||||||||||| |||   |||||||||  |||||| || |||     
T  8615710 agctccttcagatgatcttcgagaacttctacttcactctgctggttattcctatcaagcaaatttgtagccacagtaattgcattgttgatattttcaa 8615809  T
Q  123 ttacttgagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacattggccttcct 222  Q
     |  |||||| || ||||||||   ||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||| |||||||||||    
T  8615810 ctttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaacttgtaaatgcagtcatctaattcattcattaccttggccttcct 8615909  T
Q  223 ta 224  Q
    ||    
T  8615910 ta 8615911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 13334382 - 13334278
Alignment:
Q  179 ttgtaaacacaatcatctaatccattcattacattggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttcttcaa 278  Q
    ||||||||||||  ||||||| |||||||||| |||||||||||||| || |||| |||||  |||  ||| || | ||||||| ||||||||| |||||    
T  13334382 ttgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatcattttttcaa 13334283  T
Q  279 tttct 283  Q
    |||||    
T  13334282 tttct 13334278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 8658469 - 8658563
Alignment:
Q  134 gagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacattggccttccttaaaaa 228  Q
    ||||| ||||| ||||||||||| || ||||  |||||| |||  ||||||||||||| ||| ||  |||||||||| |||||||||||||||||    
T  8658469 gagaggtttaaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaatcattcattactttggccttccttaaaaa 8658563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 1300564 - 1300669
Alignment:
Q  134 gagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacattggccttccttaaaaaattct 233  Q
    ||||| ||||| ||||||||||| |||||||  |||||| |||  ||||||||||||| ||| ||  ||||||||||  |||||||| ||||||| ||||    
T  1300564 gagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaatcattcattactgtggccttctttaaaaacttct 1300663  T
Q  234 catctt 239  Q
     |||||    
T  1300664 tatctt 1300669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 6788501 - 6788573
Alignment:
Q  17 atactctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactgtcaagcaaatttg 89  Q
    |||||||||||||| |||||||||  |||||||||||| |||||  | || |||||||| |||||||||||||    
T  6788501 atactctcaagctctttcagatgaccttcaagaacatcaatttcaacctgttggttactatcaagcaaatttg 6788573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 360
Target Start/End: Original strand, 17266985 - 17267268
Alignment:
Q  77 tcaagcaaatttgtggcctttgtaattgcagagttgatcttgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctca 176  Q
    |||||||| |||||||||||| |||||||||  |||||||| |   || |||  |||||||||||||| |||| ||| || ||||| |   ||||   ||    
T  17266985 tcaagcaattttgtggcctttttaattgcagcattgatcttcttgttttcttttgaagagagctttaaattaatatctttcttcttcaacacattttcca 17267084  T
Q  177 acttgtaaacacaatcatctaatccattcattacattggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttcttc 276  Q
    | ||||||||||| || || | | |||||||||| || ||||| ||||| || |||| ||| |  | | ||||  | ||||||||| ||| || |  ||     
T  17267085 atttgtaaacacagtcgtccagtgcattcattacttttgcctttcttaagaatttcttatcatcgatagagtacgcctcagcttctttaaccaatctttt 17267184  T
Q  277 aatttcttgagttgacaatctttctctgttattagttattgtaatcccattcatactaccagtggatttttcattagcagaaac 360  Q
    ||||| || ||  || || ||| || ||| ||| |||||||||||| ||||| |||||||||||||||| ||  ||||||||||    
T  17267185 aatttgttcagccgataaccttcctttgtcattggttattgtaatctcattcttactaccagtggatttgtccatagcagaaac 17267268  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 360
Target Start/End: Original strand, 6788738 - 6788844
Alignment:
Q  254 tcagcttctctaatcatttcttcaatttcttgagttgacaatctttctctgttattagttattgtaatcccattcatactaccagtggatttttcattag 353  Q
    ||||||||| |||||| || || |||||| | | |  |||| |||||| ||| ||| ||||| |||||| |||||||| | || |||||||||||| |||    
T  6788738 tcagcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaatctcattcatattgcccgtggatttttcagtag 6788837  T
Q  354 cagaaac 360  Q
    |||||||    
T  6788838 cagaaac 6788844  T

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Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 28910363 - 28910633
Alignment:
Q  17 atactctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactg---tcaagcaaatttgtggcctttgtaattgcagagttga 113  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||| |  |||||||||||    ||||||||||||||| ||||| ||||||||||||| |    
T  28910363 atactttcaagatccttcagatgattttcaagaatatctatttcactctgctggttactaatttcaagcaaatttgtgtcctttttaattgcagagttaa 28910462  T
Q  114 tcttgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacatt 213  Q
    |||||||| || ||||||| ||||||||||  |||  |||||| || |||| | ||||| ||| |||||||||||||| || |||| |||||||||||||    
T  28910463 tcttgtcattttcttgagaggagagctttagattagtatccttcttgtttaaatcattcttcatcttgtaaacacaataatgtaatgcattcattacatt 28910562  T
Q  214 ggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttcttcaatttctt 284  Q
    |||||| |||| ||| || |||||||  |||  |||||  ||||||||| | |||||||||| ||||||||    
T  28910563 ggcctttcttagaaatttttcatcttctacatggtaattctcagcttctttgatcatttcttgaatttctt 28910633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 12488837 - 12488636
Alignment:
Q  14 aatatactctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactgtcaagcaaatttgtggcctttgtaattgcagagttga 113  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||| |  || |  | ||| |||| ||||||||||||||| ||||| |||   ||||    
T  12488837 aatatactctcaagctccttcaaatgattttccagaacatgtatttcactttgtttttcactatcaa-caaatttgtggccttcgtaatcgcatgattga 12488739  T
Q  114 tcttgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacatt 213  Q
    |||| ||| || ||| ||| |||||||||||||||||||||||  |||||||||||||| ||| ||||||||  ||||  |||||||||||||||| |||    
T  12488738 tcttatcattttctttagatgagagctttaatttaacatccttcctctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaatt 12488639  T
Q  214 ggc 216  Q
    |||    
T  12488638 ggc 12488636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 318
Target Start/End: Original strand, 15594087 - 15594328
Alignment:
Q  77 tcaagcaaatttgtggcctttgtaattgcagagttgatctt-gtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctc 175  Q
    |||||||||||||| |||  ||||||||||   |||||||| || | || ||| ||||||||| |||||||| |||||||||||||| |||||||| |||    
T  15594087 tcaagcaaatttgtagccactgtaattgcaccattgatctttgtaactt-ctttagaagagagttttaatttgacatccttattcttcagagcatttctc 15594185  T
Q  176 aacttgtaaacacaatcatctaatccattcattacattggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttctt 275  Q
    |||||||||||||| ||||||||| |||||||||| |  ||||||||||  || |||||||||| | |||  || || || ||||||  |||||||| ||    
T  15594186 aacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttt 15594285  T
Q  276 caatttcttgagttgacaatctttctctgttattagttattgt 318  Q
     |||||| |  | |||||| |||||| ||| ||| ||||||||    
T  15594286 taatttcatatgctgacaacctttctttgtcattggttattgt 15594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 374
Target Start/End: Complemental strand, 34467783 - 34467610
Alignment:
Q  201 cattcattacattggccttccttaaaaaattctcatctttaacacagtaatcttcagcttctctaatcatttcttcaatttcttgagttgacaatctttc 300  Q
    |||||||||  | |||||||||||| || |||| ||||| ||||| |||||| |||||||||| ||||||||||||||||||||  || ||||| ||| |    
T  34467783 cattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcc 34467684  T
Q  301 tctgttattagttattgtaatcccattcatactaccagtggatttttcattagcagaaacaattaagataccat 374  Q
    | ||| ||| ||||||||||||  |||| || ||||||    |||||| |||||||||||| ||| ||| ||||    
T  34467683 tttgtcattggttattgtaatcttattcttagtaccagaccgtttttccttagcagaaacagttaggatgccat 34467610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 4679670 - 4679508
Alignment:
Q  77 tcaagcaaatttgtggcctttgtaattgcagagttgatcttgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctca 176  Q
    |||||||| || ||||||  ||||||||||  ||||||||| ||| || | | | ||||||||||||| ||||||||||| ||||||| ||||||| | |    
T  4679670 tcaagcaagttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttga 4679571  T
Q  177 acttgtaaacacaatcatctaatccattcattacattggccttccttaaaaaattctcatctt 239  Q
      ||||||||||||   || ||| || ||||||| || |||||||||||||| |||| |||||    
T  4679570 tattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatctt 4679508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 374
Target Start/End: Original strand, 29464970 - 29465198
Alignment:
Q  146 ttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacattggccttccttaaaaaattctcatctttaacac 245  Q
    |||||| |||| |||||||  | |||| |||  ||||||||||||  ||||||| || |||||||||||||||||||||  || | |  |||||  |||     
T  29464970 ttaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattacattggccttccttacgaattgcatatcttccacat 29465069  T
Q  246 agtaatcttcagcttctctaatcatttcttcaatttcttgagttgacaatctttctctgttattagttattgtaatcccattcatactaccagtggattt 345  Q
     ||| |  ||||||||| ||||||||| ||||||||||   ||||| || |||||| ||  |||||| || || ||| |||||||| |  |||| ||| |    
T  29465070 ggtatttctcagcttctttaatcattttttcaatttctaacgttgataacctttctttgccattagtaatggtgatcacattcatattgtcagtagatat 29465169  T
Q  346 ttcattagcagaaacaattaagataccat 374  Q
    ||| ||||||| |||| ||| ||| ||||    
T  29465170 ttccttagcagtaacagttaggatgccat 29465198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 16663059 - 16662952
Alignment:
Q  132 aagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacattggccttccttaaaaaatt 231  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||| |||||||  || ||||||||| |||||||||| |||||||||||||  || ||    
T  16663059 aagaaagctttaatttgacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaattt 16662960  T
Q  232 ctcatctt 239  Q
    ||||||||    
T  16662959 ctcatctt 16662952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 253 - 374
Target Start/End: Original strand, 43624637 - 43624758
Alignment:
Q  253 ttcagcttctctaatcatttcttcaatttcttgagttgacaatctttctctgttattagttattgtaatcccattcatactaccagtggatttttcatta 352  Q
    |||||||||||||||||| | || ||||||||||| |||||||||| || |||  || || ||||||||| ||||| || |||||||||||||||| |||    
T  43624637 ttcagcttctctaatcatgtttttaatttcttgagatgacaatcttcctttgtccttggtaattgtaatctcattcctattaccagtggatttttcttta 43624736  T
Q  353 gcagaaacaattaagataccat 374  Q
    ||||||||  ||||||| ||||    
T  43624737 gcagaaacggttaagatgccat 43624758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 43624441 - 43624548
Alignment:
Q  14 aatatactctcaagctccttcagatgattttcaagaacatctatttcgccgtgctggttactgtcaagcaaatttgtggcctttgtaattgcagagttga 113  Q
    |||||||||||||||||||| |||||||| || ||||||||  |||  |  | ||| ||| ||||||||||||||||||||||||||||||||   ||||    
T  43624441 aatatactctcaagctccttaagatgattctcgagaacatccgttttactctcctgattagtgtcaagcaaatttgtggcctttgtaattgcattattga 43624540  T
Q  114 tcttgtca 121  Q
    ||||||||    
T  43624541 tcttgtca 43624548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 16658636 - 16658497
Alignment:
Q  77 tcaagcaaatttgtggcctttgtaattgcagagttgatcttgtcagttacttgagaagagagctttaatttaacatccttattctttagagcattcctca 176  Q
    ||||||||| ||||||||   |||||||||  ||||||||| ||| || ||||||| ||||||||||| || ||||| ||   ||||| ||||||| |||    
T  16658636 tcaagcaaacttgtggccacagtaattgcattgttgatcttctcaatttcttgagaggagagctttaaattcacatcttt---ctttaaagcattcttca 16658540  T
Q  177 acttgtaaacacaatcatctaatccattcattacattggcctt 219  Q
      ||||||||||||| ||| ||| |||||||||| ||||||||    
T  16658539 tattgtaaacacaataatccaatgcattcattaccttggcctt 16658497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 16663177 - 16663134
Alignment:
Q  17 atactctcaagctccttcagatgattttcaagaacatctatttc 60  Q
    |||||||||||||||||||||||||  ||||||||||||| |||    
T  16663177 atactctcaagctccttcagatgatcctcaagaacatctacttc 16663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 361
Target Start/End: Original strand, 30774351 - 30774585
Alignment:
Q  127 ttgagaagagagctttaatttaacatccttattctttagagcattcctcaacttgtaaacacaatcatctaatccattcattacattggccttccttaaa 226  Q
    |||||| || |||||||| || || |||||| |||||||| ||||||||||||||||||  ||   ||||||| ||||||||||  | | ||||||||      
T  30774351 ttgagatgatagctttaaatttacgtccttaatctttagaccattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttccttagg 30774450  T
Q  227 aaattctcatctttaacacagtaatcttcagcttctctaatcatttcttcaatttcttgagttgacaatctttctctgttattagttattgtaatcccat 326  Q
    || |||||||||| | ||| ||| |||  |||||||  ||||||||  | ||||||||   | || || |||||| |||  || ||||| || ||| |||    
T  30774451 aatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaatttcttctctggataacctttctttgtcgttggttatcgtgatctcat 30774550  T
Q  327 tcatactaccagtggatttttcattagcagaaaca 361  Q
    ||||| | ||||||||||||||  |||||||||||    
T  30774551 tcatattgccagtggatttttccatagcagaaaca 30774585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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