View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5493_low_1 (Length: 462)
Name: NF5493_low_1
Description: NF5493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5493_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 38496545 - 38496974
Alignment:
| Q |
18 |
gaactgtttttgtctcaccatggatttacaatggatctatgcaaggataggaatggagtacttcttcctccaaagctagaagtgaggtattcttttgatt |
117 |
Q |
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| T |
38496545 |
gaactgtttttgtctcaccatggatttacaatggatccatgcaaggataggaatggagtacttc---ctccaaagctagaagtgaggtattcttttgatt |
38496641 |
T |
|
| Q |
118 |
tttgaggattggttgtgagtagggtttgtgttaggtttgatgtagaatctgattcagatgtaagtgaagaagctatggaactgaaggctttcaaagattg |
217 |
Q |
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| T |
38496642 |
tttgaggattggttgtgagtagggtttgtgttaggtttgatgtagaatctgattcagatgtaagtgaagaagctatggaactgaaggctttcaaagattg |
38496741 |
T |
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| Q |
218 |
attgcaatctaaagaagggaaagtaaggtttgttgggaaaggaatgaaccccatttgtgtggaaatctgattctcctcctcaaataagtggtggtcaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38496742 |
attgcaatctaaagaagggaaagtaaggtttgttgggaaaggaatgaaccccatttgtgtggaaatctgattctcctcctcaaataagtggtggtcaata |
38496841 |
T |
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| Q |
318 |
atttgggacatcacttcttcttatgatctctctatccttctcccttttcttctctatatatagttggtgatctttctagagctagcaaagaggttaggtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38496842 |
atttgggacatcacttcttcttatgatctctctatccttctcccttttcttctctatatatagttggtgatctttctagagctagcaaagaggttaggtg |
38496941 |
T |
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| Q |
418 |
caacacttatatattgggtttctctcaagcctttg |
452 |
Q |
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|| ||||||||| ||||||||||||||||||||| |
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| T |
38496942 |
ca--acttatatagtgggtttctctcaagcctttg |
38496974 |
T |
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