View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5493_low_3 (Length: 421)

Name: NF5493_low_3
Description: NF5493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5493_low_3
NF5493_low_3
[»] chr5 (2 HSPs)
chr5 (23-421)||(10357982-10358380)
chr5 (156-188)||(645344-645376)
[»] chr7 (4 HSPs)
chr7 (156-197)||(10893875-10893916)
chr7 (156-187)||(30737168-30737199)
chr7 (156-193)||(18750888-18750925)
chr7 (163-195)||(37610057-37610089)
[»] chr3 (1 HSPs)
chr3 (156-193)||(30367629-30367666)
[»] chr8 (2 HSPs)
chr8 (156-195)||(32691755-32691794)
chr8 (157-195)||(8917544-8917582)
[»] chr6 (1 HSPs)
chr6 (162-207)||(10031588-10031633)
[»] chr4 (3 HSPs)
chr4 (156-201)||(683064-683109)
chr4 (156-196)||(41989576-41989616)
chr4 (164-200)||(45267889-45267925)


Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 23 - 421
Target Start/End: Original strand, 10357982 - 10358380
Alignment:
Q  23 tcaagactccgatttcaaactatcattacatcacagaatgcatagtaaatatctcacagcaatgtagcaacacattttctttcttttaaataaactttag 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10357982 tcaagactccgatttcaaactatcattacatcacagaatgcatactaaatatctcacagcaatgtagcaacacattttctttcttttaaataaactttag 10358081  T
Q  123 caatgacctatgaagcaccgacacaaccagtaaaatttaagaaaatgacataactgaatgtaatcaaatgtgttgtgtcagtgtcagacacgtgccgaat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10358082 caatgacctatgaagcaccgacacaaccagtaaaatttaagaaaatgacataactgaatgtaatcaaatgtgttgtgtcagtgtcagacacgtgccgaat 10358181  T
Q  223 gccggacacacctccaatcagaagtgtcaagtgttatcgaggcaacgactacattaactacattgtttcttaatgattctatactttccagacgcaacat 322  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10358182 gccggacacaccttcaatcagaagtgtcaagtgttattgaggcaacgactacattaactacattgtttcttaatgattctatactttccagacgcaacat 10358281  T
Q  323 cacaatgaaacagataaactcaatacaaattacaattcatttttaatttcaaaaatcacacgaaacaggacgcagcaacaatatcaaatcacaacattc 421  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  10358282 cacaatgaaacagataagctcaatacaaattacaattcatttttaatttcaaaaatcatacgaaacaggacgcaacaacaatatcaaatcacaagattc 10358380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 645344 - 645376
Alignment:
Q  156 aatttaagaaaatgacataactgaatgtaatca 188  Q
    |||||||||||||||||||| ||||||||||||    
T  645344 aatttaagaaaatgacataattgaatgtaatca 645376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 10893916 - 10893875
Alignment:
Q  156 aatttaagaaaatgacataactgaatgtaatcaaatgtgttg 197  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  10893916 aatttaagaaaatgacataattgaatgtaatcacatgtgttg 10893875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 187
Target Start/End: Complemental strand, 30737199 - 30737168
Alignment:
Q  156 aatttaagaaaatgacataactgaatgtaatc 187  Q
    ||||||||||||||||||||||||||||||||    
T  30737199 aatttaagaaaatgacataactgaatgtaatc 30737168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 18750888 - 18750925
Alignment:
Q  156 aatttaagaaaatgacataactgaatgtaatcaaatgt 193  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  18750888 aatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 37610089 - 37610057
Alignment:
Q  163 gaaaatgacataactgaatgtaatcaaatgtgt 195  Q
    |||||||||||||||||||||||||| ||||||    
T  37610089 gaaaatgacataactgaatgtaatcacatgtgt 37610057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 30367666 - 30367629
Alignment:
Q  156 aatttaagaaaatgacataactgaatgtaatcaaatgt 193  Q
    |||||||||||||||||||| |||||||||||||||||    
T  30367666 aatttaagaaaatgacataattgaatgtaatcaaatgt 30367629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 32691755 - 32691794
Alignment:
Q  156 aatttaagaaaatgacataactgaatgtaatcaaatgtgt 195  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  32691755 aatttaagaaaatgacataattgaatgtaatcacatgtgt 32691794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 8917582 - 8917544
Alignment:
Q  157 atttaagaaaatgacataactgaatgtaatcaaatgtgt 195  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  8917582 atttaagaaaatgacataattgaatgtaatcagatgtgt 8917544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 10031588 - 10031633
Alignment:
Q  162 agaaaatgacataactgaatgtaatcaaatgtgttgtgtcagtgtc 207  Q
    |||||||||||||| | |||||||||| | ||||||||||||||||    
T  10031588 agaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtc 10031633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 683064 - 683109
Alignment:
Q  156 aatttaagaaaatgacataactgaatgtaatcaaatgtgttgtgtc 201  Q
    ||||| |||||||||||||| |||||||||||| |||||| |||||    
T  683064 aatttgagaaaatgacataattgaatgtaatcacatgtgtcgtgtc 683109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 41989576 - 41989616
Alignment:
Q  156 aatttaagaaaatgacataactgaatgtaatcaaatgtgtt 196  Q
    |||||||||||||||||||| |||||||||| || ||||||    
T  41989576 aatttaagaaaatgacataattgaatgtaattaactgtgtt 41989616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 45267889 - 45267925
Alignment:
Q  164 aaaatgacataactgaatgtaatcaaatgtgttgtgt 200  Q
    |||||||||||| |||||||||||| |||||||||||    
T  45267889 aaaatgacataattgaatgtaatcatatgtgttgtgt 45267925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University