View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5494-Insertion-10 (Length: 300)
Name: NF5494-Insertion-10
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494-Insertion-10 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 11711746 - 11712038
Alignment:
| Q |
8 |
ctaagtccctaattcctaagcataaatgcaagaaaccaagagagccgttggttatggaagaaactagctgcaagtttgaatatcttactagactccaaaa |
107 |
Q |
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| T |
11711746 |
ctaagtccctaattcctaagcataaatgcaagaaaccaagagagccgttggttatggaagaaactagctgcaagtttgaatatcttactagactccaaaa |
11711845 |
T |
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| Q |
108 |
gggtctcgaggaagaattttggaacatgatgattgttaacattatcaccattaagaaatcaaagaaaatgagcaacaaatgattaatgcacgaggaggga |
207 |
Q |
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| T |
11711846 |
gggtctcgaggaagaattttggaacatgatgattgttaacattatcaccattaagaaatcaaagaaaatgagcaaaaaatgattaatgcacgaggaggga |
11711945 |
T |
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| Q |
208 |
tcggtcaataacttgaaatcataaccgaaaagatttcctccattctcggaacaaataatgctccaataatcctccatcttcttttttagcttc |
300 |
Q |
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| T |
11711946 |
tcggtcaataacttgaaatcataaccgaaaagatttcctccattctcggaacaaataatgctccaataatcctccatcttcttttttagcttc |
11712038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 11661813 - 11661622
Alignment:
| Q |
18 |
aattcctaagcataaatgcaagaaaccaagagagccgttggttatggaagaaactagctgcaagtttgaatatcttactagactccaaaagggtctcgag |
117 |
Q |
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| T |
11661813 |
aattcctaaacataaatgcaaaaacccaagagagccattgataatggtagaaactagctgcaagtttgaatattgtactagactccgaaatggcctcgaa |
11661714 |
T |
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| Q |
118 |
gaagaattttggaacatgatgattgttaacattatcaccattaagaaatcaaagaaaatgagcaacaaatgattaatgcacgaggagggatc |
209 |
Q |
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| T |
11661713 |
gaagacttcaggatcatgttgaatgataatatgatcaacaagaacacatcaaagaaaattaccaacaaatggttgatgcatgaggatggatc |
11661622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 11616994 - 11616893
Alignment:
| Q |
21 |
tcctaagcataaatgcaagaaaccaagagagccgttggttatggaagaaactagctgcaagtttgaatatcttactagactccaaaagggtctcgaggaa |
120 |
Q |
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||||||| |||||||||| ||||| ||| |||| |||||||||| |||||||| ||||||||||||||||| ||||||||| | ||| |||||||||||| |
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| T |
11616994 |
tcctaaggataaatgcaacaaacctagaaagccattggttatggcagaaactaactgcaagtttgaatatcgtactagacttcgaaaaggtctcgaggaa |
11616895 |
T |
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| Q |
121 |
ga |
122 |
Q |
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|| |
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| T |
11616894 |
ga |
11616893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 11633241 - 11633342
Alignment:
| Q |
21 |
tcctaagcataaatgcaagaaaccaagagagccgttggttatggaagaaactagctgcaagtttgaatatcttactagactccaaaagggtctcgaggaa |
120 |
Q |
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| T |
11633241 |
tcctaaggataaatgcaacaaccctagaaagccattgattatggcagaaactaactgcaagtttgaatatcgtactagacttcgaaaaggtctcgaggaa |
11633340 |
T |
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| Q |
121 |
ga |
122 |
Q |
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|| |
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| T |
11633341 |
ga |
11633342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 11754624 - 11754557
Alignment:
| Q |
22 |
cctaagcataaatgcaagaaaccaagagagccgttggttatggaagaaactagctgcaagtttgaata |
89 |
Q |
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| T |
11754624 |
cctaagaaaaaatgcaacaaaccaagagagccattggttattgcagaaactagctgcaactttgaata |
11754557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 12095311 - 12095378
Alignment:
| Q |
22 |
cctaagcataaatgcaagaaaccaagagagccgttggttatggaagaaactagctgcaagtttgaata |
89 |
Q |
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|||||| | |||||||| |||||||||||||| |||||||| | ||||||||||||||| |||||||| |
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| T |
12095311 |
cctaagaacaaatgcaacaaaccaagagagccattggttattgcagaaactagctgcaactttgaata |
12095378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 11321 - 11251
Alignment:
| Q |
43 |
ccaagagagccgttggttatggaagaaactagctgcaagtttgaatatcttactagactccaaaagggtct |
113 |
Q |
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| T |
11321 |
ccaagaaagccattggttatggcagagactagctgcaagtttgaatatcttactaaactccagaagggtct |
11251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 10170 - 10225
Alignment:
| Q |
58 |
gttatggaagaaactagctgcaagtttgaatatcttactagactccaaaagggtct |
113 |
Q |
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| T |
10170 |
gttatggcagataccagttgcaagtttgaatatcttaccagactccaaaagggtct |
10225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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