View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5494-Insertion-2 (Length: 1000)
Name: NF5494-Insertion-2
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 882; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 882; E-Value: 0
Query Start/End: Original strand, 8 - 998
Target Start/End: Complemental strand, 9682156 - 9681165
Alignment:
| Q |
8 |
gataccacttcttttatgggtgaaggttctcaaggacaggtataccacttatcaactagaatttaaatttgactcaacttgttggatacaactcatagtt |
107 |
Q |
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| T |
9682156 |
gataccacttcttttatgggtgaaggttctcaaggacaggtataccacttatcaactagaatttaaatttgactcaacttgttggatacaactcatagtt |
9682057 |
T |
|
| Q |
108 |
accgataagtggacaggtcggttaagaggtaagtaatcttgtaaactggaccatatttaa-cacaggtcgtaatttgtaaactctaagcttgaataatag |
206 |
Q |
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| T |
9682056 |
accgataagtggacaggtcggttaagaggtaagtaatcttgtaaactggaccatatttaaacacaggtcgtaatttgtaaactctaagcttgaataatag |
9681957 |
T |
|
| Q |
207 |
aaaggctctgtagccacacaacagtccgagagataggcccaattggccgaattccgtgttaaaatctagtgtgttctttgtttacatttttcacatatgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9681956 |
aaaggctctgtagccacacaacagtccgagagataggcccaattggccgaattccgtgttcaaatctagtgtgttctttgtttacatttttcacatatgt |
9681857 |
T |
|
| Q |
307 |
tttcttttgaaccggagttgaggttctaacaaaacttggtgctcaaatctcgtatattctttgtttgcattttttcatatacattttcttttaaaccgag |
406 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9681856 |
tttcttttgaaccggggttgaggttctaacaaaacttggtgctcaaatctcgtatattctttgtttgcattttttcgtatacattttcttttaaaccgag |
9681757 |
T |
|
| Q |
407 |
gttgacgttgtaacacaactcaaccctacaaaactagtttgtaaactcaacacacttcacgcacgctcatgactaaacatctagagtgtgatcgagtcat |
506 |
Q |
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| T |
9681756 |
gttgacgttgtaacacaactcaaccctacaaaactagtttgtatactcaacacacttcatgcacgctcatgactaaacatctagagtgtgatcgagtcat |
9681657 |
T |
|
| Q |
507 |
gacaggtggtcctataggtcttggataagatttcacaccttcttaggttttgagttgggattaattcatcatacgaaaatggcttgttaagtgagaaaca |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9681656 |
gacaggtggtcctataggtcttggataagatttcacac---cttaggttttgagttgggattaattcatgatacgaaaatggcttgttaagtgagaaaca |
9681560 |
T |
|
| Q |
607 |
cctattctatgtaaagttcnnnnnnngtcgtatcacatccgacatgggactctcaacatttttatttcaatcatgatatttagtaaatgtactcttgcac |
706 |
Q |
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| T |
9681559 |
cctattctatgtaaagttctttttttgtcgtatcacatccgacatgggactctcaacatttttctttcaatcatgatatttagtaaatgtactcttgcac |
9681460 |
T |
|
| Q |
707 |
acatggtttctcataattttgttgtatgaaagtacaagttgctggcatataatgaatgttatgtgaaatatgaaagggattggaaattaatataccatct |
806 |
Q |
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| T |
9681459 |
acatggtttctcataattttgttgtatgaaagtacaagttgctggcatataatgaatgttatgtgaaatatgaaagggattggaaattaatataccatct |
9681360 |
T |
|
| Q |
807 |
accaatgaaggaccaccaataggaacc-aagatatttatggatgttattggaccatttccatataagagaggtactaactaacaaactc-aagacagctg |
904 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9681359 |
accaatgaaggaccaccaataggaaccaaagatatttgtggatgttattggaccatttccatataagagaggtactaactaacaaactcaaagacagctg |
9681260 |
T |
|
| Q |
905 |
gagaagtacaaaacaggtgttgcagaatgttataaatttaatgtgtctgtttaactgaaaatg-tactacctatttggtttcagaaaatyttttt |
998 |
Q |
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| T |
9681259 |
gagaagtacaaaataggtgttgcagaatgttataaatttaatgtgtctgtttaactgaaaatgttaccacctatttggtttcagaaaactttttt |
9681165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 11319381 - 11319416
Alignment:
| Q |
176 |
gtaatttgtaaactctaagcttgaataatagaaagg |
211 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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| T |
11319381 |
gtaatctgtaaactctaagcttgaataatagaaagg |
11319416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 37348156 - 37348105
Alignment:
| Q |
275 |
gtgtgttctttgtttacatttttcacatatgttttcttttgaaccggagttg |
326 |
Q |
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||||||||||||| ||| |||||| ||||||||||||||||||||| |||| |
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| T |
37348156 |
gtgtgttctttgtctacggttttcatatatgttttcttttgaaccggtgttg |
37348105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 13884843 - 13884771
Alignment:
| Q |
349 |
tcaaatctcgtatattctttgtttgcattttttcatatacattttcttttaaaccgaggttgacgttgtaacac |
422 |
Q |
| |
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| T |
13884843 |
tcaaatctcgtatgttctttgtttgcat-ttttcaaatctattttcttttcaactggggtttacgttctaacac |
13884771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 14024968 - 14024896
Alignment:
| Q |
349 |
tcaaatctcgtatattctttgtttgcattttttcatatacattttcttttaaaccgaggttgacgttgtaacac |
422 |
Q |
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| T |
14024968 |
tcaaatctcgtatgttctttgtttgcat-ttttcaaatctattttcttttcaactggggtttacgttctaacac |
14024896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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