View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5494-Insertion-5 (Length: 913)
Name: NF5494-Insertion-5
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494-Insertion-5 |
 | |
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| [»] chr8 (8 HSPs) |
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| [»] chr3 (10 HSPs) |
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| [»] chr2 (11 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0097 (1 HSPs) |
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| [»] scaffold1868 (1 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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| [»] scaffold0850 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 542 - 913
Target Start/End: Complemental strand, 2870953 - 2870583
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2870953 |
gcagggatagattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagccggagagatcatgcgcggggagatggcttactacc |
2870854 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |
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|
| T |
2870853 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtgtatgacatgaagtggtctacatatgatgatcaccgagcggtgcacc |
2870754 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagggatggtgtaccttcatttaccttgacggttaagagacagtttgggtttgtac |
841 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| | | |||||||||||||||||||||| |
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|
| T |
2870753 |
cttttcagcttattaacacttactcgggatggctgatacgcgggaagggatggtgtgccgtcatttaccttggc-ttaaagagacagtttgggtttgtac |
2870655 |
T |
|
| Q |
842 |
aggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttgaaagacc |
913 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2870654 |
aggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttgaaagacc |
2870583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 281 - 474
Target Start/End: Complemental strand, 2871207 - 2871015
Alignment:
| Q |
281 |
attagaagatcgagtgcgacggactcataaaa-atatggtgtgattttgttatccagcacataaaaatgttttgtgcacaatcgatttgggttgtgcacc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2871207 |
attagaagatcgagtgcgacggactcataaaagatatggtgtgattttgttatccagcacataaaaatgttttgtgcacaatctatttgggttgtgcacc |
2871108 |
T |
|
| Q |
380 |
atagacatcgtgatgcaacaaatcacaatataaaaagagacaaaaatacgcctttggaattgatgatagtttactgtgtcaacaagtaagttatc |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2871107 |
atagacatcgtgatgcaacaaatcacaatataaga--agacaaaaatacgctattggaattgatgatagtttactgtgtcaacaagtaagttatc |
2871015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 546 - 811
Target Start/End: Complemental strand, 42096517 - 42096251
Alignment:
| Q |
546 |
ggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccagag |
645 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| ||| | |||| ||| |||||| | |||||| |||| | |||| ||| ||||||| ||||| |
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|
| T |
42096517 |
ggatggattttgaagcatttgccaggtccgtacccaaggaagaaaaacaagagctggaagccagagagaccatgtgttgggaaatgacttactagcagag |
42096418 |
T |
|
| Q |
646 |
ggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcccttt |
745 |
Q |
| |
|
|||||| || | |||||||||| |||| || ||| |||||||||||||||||||| | | || ||||| |||| ||||||| ||| | |||||| ||| |
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|
| T |
42096417 |
ggcatacagatatgcaccattatcgcttactgcttgatcgcttagaggtggatgatgtcaggttttctacttatggtgatcacagagagatgcgccattt |
42096318 |
T |
|
| Q |
746 |
tcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||| |||||| ||||||||| ||||| ||||| ||||||||| |||||| |||| |||||||||| |
|
|
| T |
42096317 |
tcagcttattgtcacttactcgggatgactgatgagcgggaaggagatggtataccgtcatttacct |
42096251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 600 - 811
Target Start/End: Complemental strand, 23714197 - 23713987
Alignment:
| Q |
600 |
tggaagtcggagagatcatgcgcggggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatg |
699 |
Q |
| |
|
|||||| |||| ||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
23714197 |
tggaagccggacagaccatgtgcggggagatggcttactagcagagggcataaagttgtgcaccattaccgcctactcttggatcgcttagaggtggatg |
23714098 |
T |
|
| Q |
700 |
acatgaagtggtctacatatgatgatcaccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgta |
798 |
Q |
| |
|
| ||| ||||||||||||||| ||||| || | | || | |||||| |||||| ||||||||| ||||| || || ||||||||| || |||||| |
|
|
| T |
23714097 |
atgtgagatggtctacatatgataatcac--agagatacgtcattttcagcttattgtcacttactcgggatgacttatgtgcgggaaggagagggtgta |
23714000 |
T |
|
| Q |
799 |
ccttcatttacct |
811 |
Q |
| |
|
|| || ||||||| |
|
|
| T |
23713999 |
ccgtcgtttacct |
23713987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 542 - 728
Target Start/End: Complemental strand, 44116673 - 44116487
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||| ||| | ||| | | |||||| |||||||| |||| | |||||||||||||||| | |
|
|
| T |
44116673 |
gcagggatggattttggagcatttgccaggtccttacccaaggaagccaaacctggggtggaagccggagagaccatgtgttgggagatggcttactagc |
44116574 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcac |
728 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | | | ||||||||| |||||||||||| | |||| ||||| |||| ||||||| |
|
|
| T |
44116573 |
agagggcataaagatgtgcaccattaccgcttatgccaggatcgcttggaggtggatgacgtcaagttttctacttatggtgatcac |
44116487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 544 - 701
Target Start/End: Complemental strand, 8317794 - 8317637
Alignment:
| Q |
544 |
agggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccag |
643 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| |||||||| ||| | || ||| |||| | |||||||| |||| || |||||||||||||| | || |
|
|
| T |
8317794 |
agggatggattttggagcatttgccaggtctgtacccaaggaagaaaaatagggagtggacgccggagagaccatgtgctgggagatggcttacaagcaa |
8317695 |
T |
|
| Q |
644 |
agggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
||| |||| || ||||||||||||||||| ||| ||||||| ||| |||||||||||| |
|
|
| T |
8317694 |
aggacataaagatgtgcaccattaccgcttacgcctggatcacttggaggtggatgac |
8317637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 624 - 808
Target Start/End: Original strand, 41269309 - 41269494
Alignment:
| Q |
624 |
gggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatg |
723 |
Q |
| |
|
|||||||||||||| | || ||| |||| | ||||||||| | |||||||| ||||||||||| |||||||||||| | | || ||||| |||| || |
|
|
| T |
41269309 |
gggagatggcttacaagcaaaggacataaatatgtgcaccaatttcgctcacgcctggatcgcttggaggtggatgacgtcaggttttctacttatggtg |
41269408 |
T |
|
| Q |
724 |
atcaccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcattta |
808 |
Q |
| |
|
||||| ||| |||| || |||||||||||| ||||||||| ||||||||||| |||| |||| ||||||||| | ||||||| |
|
|
| T |
41269409 |
atcacagagacgtgcacctatttcaacttattgtcacttactcgggatggctgatgtgcggaaaggagatggtgtaacgtcattta |
41269494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 669
Target Start/End: Complemental strand, 20478122 - 20477995
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| || |||||||| ||| |||||||| ||| | |||| ||| |||| | |||||||| |||| | |||||||||||||||| | |
|
|
| T |
20478122 |
gcagggatggattttggagtatttgccaggtccgtacccaaggaagaaaaacaagagctggacgccggagagaccatgtgttgggagatggcttactagc |
20478023 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattacc |
669 |
Q |
| |
|
||||| |||| | |||||||||||||| |
|
|
| T |
20478022 |
agaggccatactgatgtgcaccattacc |
20477995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 2e-82; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 544 - 913
Target Start/End: Complemental strand, 13827065 - 13826694
Alignment:
| Q |
544 |
agggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccag |
643 |
Q |
| |
|
|||||||||||||| ||||||| | | || |||||||| ||| | |||| ||| ||||||||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
13827065 |
agggatggattttggagcattttctaggttcgtacccaaggaagaaaaacaagagctggaagtcggagagaccatgtgcggggagatggcttgctaccag |
13826966 |
T |
|
| Q |
644 |
agggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgccct |
743 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| | ||| |||| |
|
|
| T |
13826965 |
agggcatacagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgatgtgaggtggtctatatatgatgatcaaagagagatgcaccct |
13826866 |
T |
|
| Q |
744 |
tttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttaccttgacg-gttaagagacagtttgggtttgtac |
841 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||| ||| ||||| || | |||||| |||||||||| || |||||||| || |||| ||| ||| |
|
|
| T |
13826865 |
tttcagcttattgtcacttactcgggatggctgatgtgcgagaaggagaggatgtaccgtcatttacctgagcgagttaagaggtagcttggctttatac |
13826766 |
T |
|
| Q |
842 |
aggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttgaaagacc |
913 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||| ||| |||| ||||| |
|
|
| T |
13826765 |
aggacatccccagacatccgtcagatgtccctgagatgcctaaggagatgttggctattgtattgatagacc |
13826694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 542 - 811
Target Start/End: Original strand, 38110508 - 38110778
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||| |||||||| ||| | || |||||||||||| || ||||| |||| || ||||||||||| |||| |
|
|
| T |
38110508 |
gcagggatgaattttggagcatttgccaggtccgtacccaaggaagaaaaataggagttggaagccgtagagaccatgtgctgggagatggctaactaga |
38110607 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||| | ||||||||||||||||| || ||| |||||||||||||| |||||| | | || ||||| |||| |||||| || | | |||| |
|
|
| T |
38110608 |
agagggcatacaaatgtgcaccattaccgcttactgcttgatcgcttagaggttgatgacgtcaggttttctacttatggcgatcacaaagagatacgcc |
38110707 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||||||| |||||| ||||||||| |||||| |||| ||||||||| ||| |||||| |||||||||| |
|
|
| T |
38110708 |
cttttcagcttattgtcacttactcgggatggttgatgtgcgggaaggatatgatgtaccgtcatttacct |
38110778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 542 - 701
Target Start/End: Original strand, 8555 - 8714
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||| || | |||||||| |||| | ||||||| |||| || ||||||||||||||| || |
|
|
| T |
8555 |
gcagggatggattttggagcatttgccaggtccgtacccaagaaagaaaaacaggagctggacgccggagaggccatgtgctgggagatggcttacttcc |
8654 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
8655 |
agagggcatacagatgtgcaccattaccgcttattgcttgatcgcttagaggtggatgac |
8714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 546 - 811
Target Start/End: Complemental strand, 181067 - 180801
Alignment:
| Q |
546 |
ggatggattttgaagcatttgccaagtcagtacccaaagaaacataaca-ggagttggaagtcggagagatcatgcgcggggagatggcttactaccaga |
644 |
Q |
| |
|
||||| |||||| |||||||| || ||| |||||||| ||| | |||| ||||| ||| |||||||||| |||| || |||||||||||||| || | |
|
|
| T |
181067 |
ggatgaattttggagcatttgtcaggtccgtacccaaggaagaaaaacaaggagt-ggacgtcggagagaccatgtgctgggagatggcttacatgcaaa |
180969 |
T |
|
| Q |
645 |
gggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgccctt |
744 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||| | | | ||||| |||| |||| || ||| | | ||||||| |
|
|
| T |
180968 |
gggcataaaaatgtgcaccattaccgcttacggcttgatcgcttagaggtggatgacgtcagattttctacttatggtgataacagagggatacgccctt |
180869 |
T |
|
| Q |
745 |
ttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
|||| |||||| ||||||||| ||||| ||||| ||||||||| || |||||||| |||||||||| |
|
|
| T |
180868 |
ttcagcttattgtcacttactcgggatgactgatgtgcgggaaggagagggtgtaccgtcatttacct |
180801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 607 - 811
Target Start/End: Original strand, 48164243 - 48164447
Alignment:
| Q |
607 |
cggagagatcatgcgcggggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaa |
706 |
Q |
| |
|
|||||||| |||| || |||||||||||||| || |||||||| || ||||||| |||||||||||||||| ||||||||||||||| ||||| | | |
|
|
| T |
48164243 |
cggagagaccatgtgctgggagatggcttacatgcaaagggcataaagatgtgcac-attaccgctcacggcttgatcgcttagaggtgaatgacgtcag |
48164341 |
T |
|
| Q |
707 |
gtggtctacatatgatgatcaccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcat |
805 |
Q |
| |
|
| ||||| |||| ||||||||||| | | ||||||||||| |||||| ||||||||| ||||| ||||| ||||||||| |||| |||||| |||| |
|
|
| T |
48164342 |
attttctacttatggtgatcaccgagagatacgcccttttcagcttattgtcacttactcgggatgactgatgtgcgggaaggagatgatgtaccgtcat |
48164441 |
T |
|
| Q |
806 |
ttacct |
811 |
Q |
| |
|
|||||| |
|
|
| T |
48164442 |
ttacct |
48164447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 542 - 811
Target Start/End: Original strand, 18907563 - 18907837
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataaca-ggagttggaagtcggagagatcatgcgcggggagatggcttactac |
640 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||| ||||||| ||| | |||| ||||| ||| | |||| ||| |||| || ||||||||||||||| |
|
|
| T |
18907563 |
gcagggatggattttggagcattttccaggtccatacccaaggaagaaaaacaaggagt-ggacgccggaaagaccatgtgctaggagatggcttactag |
18907661 |
T |
|
| Q |
641 |
cagagggcatata----gttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggt |
736 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| || ||| ||||||||||||||||||||| | | || ||||| |||| | ||||| ||| || |
|
|
| T |
18907662 |
tagagggcatatatgctgatgtgcaccattaccgcttactgcttgatcgcttagaggtggatgacgtcaggttttctacttatggtcatcacagagacgt |
18907761 |
T |
|
| Q |
737 |
gcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
|| ||| ||||| |||||| ||||||||| ||||||||||| || |||||| || |||||||| |||||||||| |
|
|
| T |
18907762 |
gcacccatttcagcttattgtcacttactcgggatggctgatgtgcaggaaggagagggtgtaccgtcatttacct |
18907837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 624 - 811
Target Start/End: Original strand, 45034122 - 45034310
Alignment:
| Q |
624 |
gggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatg |
723 |
Q |
| |
|
||||||| |||||| | || ||| |||| || ||||||||||||||||||||| || ||||||||| ||||||||||| | | || ||||| |||| || |
|
|
| T |
45034122 |
gggagatagcttacaagcaaaggacataaagatgtgcaccattaccgctcacgacttgatcgcttaaaggtggatgacgtcaggttttctacttatggtg |
45034221 |
T |
|
| Q |
724 |
atcaccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||||| ||| | | | ||||||||| |||||| ||||||||| ||||| ||||| ||||||||| || |||||||| | |||||||| |
|
|
| T |
45034222 |
atcacagagagatacacccttttcagcttattgtcacttactcgggatgactgatgtgcgggaaggagagggtgtaccgtaatttacct |
45034310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 624 - 701
Target Start/End: Original strand, 55150286 - 55150363
Alignment:
| Q |
624 |
gggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||||||||||| | ||| ||||||||| ||||||||||| |
|
|
| T |
55150286 |
gggagatggcttactagcagagggcatactgatgtgcaccattaccgcttaatgcttgatcgcttaaaggtggatgac |
55150363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 664 - 811
Target Start/End: Original strand, 52560577 - 52560725
Alignment:
| Q |
664 |
attaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcccttttcaacttattaacactta |
763 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||||| | | || ||| | |||| ||||||| ||| | | ||||||||| | |||||| |||||| |
|
|
| T |
52560577 |
attactgctcaaggcttgatcgcttagaggtggatgacgtcaggttttctccttatggtgatcacagagagatacgccctttttagcttattgtcactta |
52560676 |
T |
|
| Q |
764 |
ctcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||| ||||||||||| || |||||| || |||||||| |||||||||| |
|
|
| T |
52560677 |
ctcgggatggctgatgtgcaggaaggagagggtgtaccgtcatttacct |
52560725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 658 - 701
Target Start/End: Complemental strand, 18943638 - 18943595
Alignment:
| Q |
658 |
tgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
18943638 |
tgcaccattaccgctcacgcctggatcgcttggaggtggatgac |
18943595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 3e-63; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 544 - 913
Target Start/End: Original strand, 21832852 - 21833223
Alignment:
| Q |
544 |
agggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccag |
643 |
Q |
| |
|
||||||| |||||| ||||||||||| ||| |||| ||| ||| | |||| |||||||||| |||| ||| |||| ||||||||||| ||||||||||| |
|
|
| T |
21832852 |
agggatgaattttggagcatttgccaggtccgtactcaaggaagaaaaacaagagttggaagccggaaagaccatgtgcggggagatgacttactaccag |
21832951 |
T |
|
| Q |
644 |
agggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgccct |
743 |
Q |
| |
|
|||||||| | ||||||||||||| ||| || ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| | ||| || |
|
|
| T |
21832952 |
agggcatacatttgtgcaccattatcgcgtactcctggatcgcttagaggtggatgaagtgaggtggtctacatatgatgatcacagagagatgcatcca |
21833051 |
T |
|
| Q |
744 |
tttcaacttattaacacttactcaggatggctgatacgcgggaag-ggatggtgtaccttcatttacc-ttgacggttaagagacagtttgggtttgtac |
841 |
Q |
| |
|
||||| |||||| ||||||||| |||||||| || |||||||| || ||||||| ||||||||| | ||||||| | |||||| ||||||| |
|
|
| T |
21833052 |
tttcagcttattgtcacttactcgggatggcttatgtgcgggaagaagagggtgtactgtcatttaccagagcgggttaagtggcagttttcctttgtac |
21833151 |
T |
|
| Q |
842 |
aggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttgaaagacc |
913 |
Q |
| |
|
| ||||| |||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
21833152 |
atgacattcccaaacatccgtcagatgtcgctgagattcctaaggagatgctggctcctgtgttgatagacc |
21833223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 546 - 907
Target Start/End: Original strand, 20722987 - 20723357
Alignment:
| Q |
546 |
ggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccagag |
645 |
Q |
| |
|
||||||||||| |||||||| || ||| ||||||| ||| | |||| |||||||||| |||||||| |||| || ||||||||| |||||| ||||| |
|
|
| T |
20722987 |
ggatggatttttgagcatttgtcaggtccgtacccagggaagaaaaacaagagttggaagccggagagaccatgtgcagggagatggattactaacagag |
20723086 |
T |
|
| Q |
646 |
ggcatatagttgtgca-------ccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgc |
738 |
Q |
| |
|
|||||| ||||||||| |||||||||| || || |||||||||||||||| ||| || ||||||||||||||||||||| ||| ||| |
|
|
| T |
20723087 |
ggcatacagttgtgcagtgtgtaccattaccgcctactccttgatcgcttagaggtgggtgatgtgtggtggtctacatatgatgatcatagagaaatgc |
20723186 |
T |
|
| Q |
739 |
gcccttttcaacttattaacacttactcaggatggctgatacgcgggaagggat-ggtgtaccttcatttaccttgac-ggttaagagacagtttgggtt |
836 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||| || || ||||||||| | |||||||| |||||||||| | | ||||| ||| |||||||| || |
|
|
| T |
20723187 |
gcccttttcagcttattgtcacttactcgggataacttatgtgcgggaaggaaaaggtgtaccgtcatttacctgggcaggttacgagccagtttggctt |
20723286 |
T |
|
| Q |
837 |
tgtacaggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttga |
907 |
Q |
| |
|
| ||| ||||||||| |||||| | ||||||||||||||| || ||||||||| |||||||| |||||| |
|
|
| T |
20723287 |
taaacattacatccccagacatccatcagatgtccctgagatgccaaaggagatgttggctactttgttga |
20723357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 542 - 811
Target Start/End: Original strand, 26391010 - 26391280
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
||||||||| |||||| ||||||| ||| ||| |||||||| ||| | |||| ||| |||||| |||||||| |||| || |||||||||||||||| | |
|
|
| T |
26391010 |
gcagggatgaattttggagcatttaccaggtccgtacccaaggaagaaaaacaagagctggaagccggagagaccatgtgctgggagatggcttactagc |
26391109 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||| | ||||||||||||||||| || || |||||||||| |||||||||| | | || | ||| |||| ||||||| ||| | | |||| |
|
|
| T |
26391110 |
agagggcatactgatgtgcaccattaccgcttactacttgatcgcttagtggtggatgacgtcaggttttttacttatggtgatcacagagagatacgcc |
26391209 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
|| ||| |||||| ||||||||| |||||||| | ||||||||| || |||||||| |||||||||| |
|
|
| T |
26391210 |
attctcagcttattgtcacttactcgggatggctagtgtgcgggaaggagagggtgtaccgtcatttacct |
26391280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 547 - 811
Target Start/End: Complemental strand, 695487 - 695223
Alignment:
| Q |
547 |
gatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccagagg |
646 |
Q |
| |
|
|||||||||| || |||||||| ||| |||||||| ||| | |||| ||| |||| |||||||||| |||| || |||||||||||||||| || ||| |
|
|
| T |
695487 |
gatggattttagagtatttgccaggtctgtacccaaggaagaaaaacaagagctggacgtcggagagaccatgtgctgggagatggcttactagcaaagg |
695388 |
T |
|
| Q |
647 |
gcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgccctttt |
746 |
Q |
| |
|
||||| || |||||| |||||||||| || ||| ||||||||||||||||||||| | | || ||||| |||| ||||||| ||| ||||| || ||| |
|
|
| T |
695387 |
gcatacagatgtgcatcattaccgcttactgcttgatcgcttagaggtggatgacgtcaggttttctacttatggtgatcacagagaggtgcaccaattt |
695288 |
T |
|
| Q |
747 |
caacttattaacacttactcaggatggctgatacgcgggaagggatggtgtaccttcatttacct |
811 |
Q |
| |
|
|| ||| | ||||||||| ||||| ||||| |||| | | || |||||||| |||||||||| |
|
|
| T |
695287 |
cagcttctgtgcacttactcgggatgactgatgtgcggaaggagagggtgtaccgtcatttacct |
695223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 542 - 811
Target Start/End: Complemental strand, 2120607 - 2120337
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||| ||| | |||||| |||| | ||||||| |||| || ||||||||||||| | | |
|
|
| T |
2120607 |
gcagggatggattttggagcatttgccaggtccgtacccaaggaagaaaaacagggagtggacgctggagagaccatgtgctaggagatggcttacaagc |
2120508 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
| ||| |||| || ||||||||||||||||| ||| |||||| ||| |||||||||||||| | || ||||| |||| ||||||| ||| |||| || |
|
|
| T |
2120507 |
aaaggacataaagatgtgcaccattaccgcttacgcctggattccttggaggtggatgacatcaggttttctacttatggtgatcacagagacgtgcacc |
2120408 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
| || || ||||| ||||||||| ||||||||||| ||||||||| || |||||||| |||||||||| |
|
|
| T |
2120407 |
cattccagtttattgtcacttactcgggatggctgatgtgcgggaaggagagggtgtaccgtcatttacct |
2120337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 542 - 699
Target Start/End: Complemental strand, 31501891 - 31501734
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| |||||||| | ||| ||||||| ||| | |||| ||| |||||| | |||||| |||| || |||||||||||||||| | |
|
|
| T |
31501891 |
gcagggatggattttggagcatttgttaggtccttacccaaggaagcctaacccgaggtggaagccagagagaccatgtgctgggagatggcttactagc |
31501792 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatg |
699 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
31501791 |
agagggcataaagatgtgcaccattaccgcttacgcctggatcgcttggaggtggatg |
31501734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 610 - 809
Target Start/End: Complemental strand, 40613538 - 40613338
Alignment:
| Q |
610 |
agagatcatgcgcggggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtg |
709 |
Q |
| |
|
||||| |||| || |||||||||||||||| || |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
40613538 |
agagaccatgtgctgggagatggcttactagcaaagggcataaatatgtgcaccattaccgcttacggctggatcgcttagaggtggatgatgtgaggtt |
40613439 |
T |
|
| Q |
710 |
gtctacatatgatgatcaccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcattta |
808 |
Q |
| |
|
| ||| |||| ||||||| || |||||||||||||| ||| | ||||||||| ||||||||||| |||||||| || |||||||| ||||||| |
|
|
| T |
40613438 |
ttgtacttatggtgatcacatagatgtgcgcccttttcagcttttgtgcacttactcgggatggctgatgttcgggaaggagagggtgtaccgtcattta |
40613339 |
T |
|
| Q |
809 |
c |
809 |
Q |
| |
|
| |
|
|
| T |
40613338 |
c |
40613338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 542 - 811
Target Start/End: Original strand, 29901627 - 29901899
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttgga--agtcggagagatcatgcgcggggagatggcttacta |
639 |
Q |
| |
|
|||||||||||||||| ||| |||| || ||| |||||||| ||| | ||||| || |||| | ||||||| |||| || ||||||||| |||||| |
|
|
| T |
29901627 |
gcagggatggattttggagcctttgacaggtccgtacccaaggaagcctaacacgaagtggacaaaaaggagagaccatgtgctgggagatggattacta |
29901726 |
T |
|
| Q |
640 |
ccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcg |
739 |
Q |
| |
|
|||| |||||| | |||||| ||||||||| || ||||||||||||||||||||||| ||| || |||||||||| ||||||| ||| ||||| |
|
|
| T |
29901727 |
gcagaaggcatacatatgtgcaacattaccgcctacttctggatcgcttagaggtggatgatgtgaggttttctacatatggtgatcacagagaagtgcg |
29901826 |
T |
|
| Q |
740 |
cccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||||||||| ||| | ||||||||| ||||||||||| ||| ||||| || |||||| | |||||||||| |
|
|
| T |
29901827 |
cccttttcaccttctgtgcacttactcgggatggctgatgtgcgagaaggagaaggtgtatcgtcatttacct |
29901899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 607 - 789
Target Start/End: Original strand, 28652090 - 28652272
Alignment:
| Q |
607 |
cggagagatcatgcgcggggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaa |
706 |
Q |
| |
|
||||||||||||| || |||||||||||||| | || ||| |||| || ||||||||||||||||| ||| ||||||||||| |||||||||||| | | |
|
|
| T |
28652090 |
cggagagatcatgtgctgggagatggcttacaagcaaaggacataaagatgtgcaccattaccgcttacgcctggatcgcttggaggtggatgacgtcag |
28652189 |
T |
|
| Q |
707 |
gtggtctacatatgatgatcaccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg |
789 |
Q |
| |
|
|| ||||| |||| ||||||| ||| |||| ||| || || |||||| ||||||||| ||||||| || ||||||||| |
|
|
| T |
28652190 |
gttttctacttatggtgatcacagagacgtgcacccattccagcttattgtcacttactcgagatggctaatgtgcgggaagg |
28652272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 544 - 811
Target Start/End: Original strand, 4174169 - 4174437
Alignment:
| Q |
544 |
agggatggattttgaagcatttgccaagtcagtacccaaagaaacataaca-ggagttggaagtcggagagatcatgcgcggggagatggcttactacca |
642 |
Q |
| |
|
|||||||||||||| |||||||| || ||| |||||||| ||| | |||| ||||| ||| | | ||||| |||| || |||||||||||||| || |
|
|
| T |
4174169 |
agggatggattttggagcatttgtcaggtccgtacccaaggaagaaaaacaaggagt-ggacgctgaagagaccatgtgctgggagatggcttacatgca |
4174267 |
T |
|
| Q |
643 |
gagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgccc |
742 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||| | | || ||||| |||| ||||||| ||| | | | | |
|
|
| T |
4174268 |
aagggcataaagttgtgcaccattaccgctcatggcttgatcacttagaggtggatgacgtcaggttttctacttatggtgatcacagagagatacatct |
4174367 |
T |
|
| Q |
743 |
ttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
|||||| |||||| |||||||| ||||| |||| | ||||||| ||||||||||| |||||||||| |
|
|
| T |
4174368 |
ttttcagcttattgtcacttacttgggatgagtgatgtgtgggaaggagatggtgtaccgtcatttacct |
4174437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 700
Target Start/End: Original strand, 34458027 - 34458064
Alignment:
| Q |
663 |
cattaccgctcacggctggatcgcttagaggtggatga |
700 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
34458027 |
cattaccgcttacggctggatctcttagaggtggatga |
34458064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 122; Significance: 4e-62; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 542 - 913
Target Start/End: Complemental strand, 63490 - 63118
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||| |||||||| ||| | ||| | ||| |||| |||||||| |||| || |||||||||||||||| | |
|
|
| T |
63490 |
gcagggatggattttggagcattttcca-gtccgtacccaaggaagcctaataagagccagaagccggagagaccatgtgccgggagatggcttactagc |
63392 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
||||||||| | ||||||||||||||||| || || ||||||||||||||||||||| |||||||||| ||||||||||| | ||| |||||||| |
|
|
| T |
63391 |
agagggcattcaattgtgcaccattaccgccgactcctagatcgcttagaggtggatgacgcgaagtggtctgcatatgatgataagagagcggtgcgcc |
63292 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct-tgacggttaagagacagtttgggtttgt |
839 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||| || |||||| ||||||||||| |||||||||| | ||| ||||| | ||||||| | | |
|
|
| T |
63291 |
cttttcagattatttgcacttactcacgatggctgatgtgcaggaaggagatggtgtaccatcatttacctgagcgggtgaagaggccctttgggtatat |
63192 |
T |
|
| Q |
840 |
acaggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttgaaagacc |
913 |
Q |
| |
|
|| ||||||||||| ||||| || ||||||||||||||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
63191 |
actggacatccccagacatctgtcagatgtccctgagattcctgcggagatggtggctactgtgttcaaagacc |
63118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 542 - 811
Target Start/End: Original strand, 22553 - 22823
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||| ||| | |||| || |||||| | || ||| |||| || ||||||||||||||| |
|
|
| T |
22553 |
gcagggatggattttggagcatttgccaggtccgtacccaaggaagaaaaacacgaagtggaagcctgacagaccatgtgctaggagatggcttactaga |
22652 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||| || |||||| |||||||||| ||||||||||||||||||||||||||| ||| || ||||| ||||||||||| ||| ||||||| |
|
|
| T |
22653 |
agagggcatacagatgtgcagcattaccgcttacggctggatcgcttagaggtggatgatgtgaggttttctacttatgatgatcaaagagaagtgcgcc |
22752 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||||||| ||||| |||||| || ||||||||||| ||||||||| || |||||||| |||||||||| |
|
|
| T |
22753 |
cttttcagcttatgtgcacttaatcgggatggctgatgtgcgggaaggagaaggtgtaccgtcatttacct |
22823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 542 - 811
Target Start/End: Complemental strand, 16358185 - 16357915
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||| ||| | |||| || |||||| | || ||| |||| || ||||||||||||||| |
|
|
| T |
16358185 |
gcagggatggattttggagcatttgccaggtccgtacccaaggaagaaaaacacgaagtggaagcctgacagaccatgtgctaggagatggcttactaga |
16358086 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||| || |||||| |||||||||| ||||||||||||||||||||||||||| ||| || ||||| ||||||||||| ||| ||||||| |
|
|
| T |
16358085 |
agagggcatacagatgtgcagcattaccgcttacggctggatcgcttagaggtggatgatgtgaggttttctacttatgatgatcaaagagaagtgcgcc |
16357986 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||||||| ||||| |||||| || ||||||||||| ||||||||| || |||||||| |||||||||| |
|
|
| T |
16357985 |
cttttcagcttatgtgcacttaatcgggatggctgatgtgcgggaaggagaaggtgtaccgtcatttacct |
16357915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 542 - 788
Target Start/End: Complemental strand, 12025638 - 12025392
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||| ||||| | ||| |||||||| ||| | |||| ||| |||||| |||||||| |||| | ||||||||| |||||| | |
|
|
| T |
12025638 |
gcagggatggattttggagcctttgctaggtccgtacccaaggaagaaaaacaagagctggaagccggagagaccatgtgttgggagatggattactagc |
12025539 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||| | ||||||||||||||||| || ||| ||||||||| ||| ||||||| | | || ||||| |||| ||||||| ||| | | |||| |
|
|
| T |
12025538 |
agagggcatactgatgtgcaccattaccgcttactgcttgatcgcttaaagggggatgacgtcaggttttctacttatggtgatcacagagagatacgcc |
12025439 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaag |
788 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
12025438 |
cttttcaacttattgtcacttactcgggatggctgatgtgcgggaag |
12025392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 542 - 789
Target Start/End: Complemental strand, 39389545 - 39389298
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataaca-ggagttggaagtcggagagatcatgcgcggggagatggcttactac |
640 |
Q |
| |
|
|||||||||||||||| |||||||| || ||| |||||||| ||| | |||| ||||| ||| | ||||||||||||| || |||||||||||||||| |
|
|
| T |
39389545 |
gcagggatggattttggagcatttgtcaggtccgtacccaaggaagaaaaacaaggagt-ggacgccggagagatcatgtgctgggagatggcttactag |
39389447 |
T |
|
| Q |
641 |
cagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgc |
740 |
Q |
| |
|
| |||||||| | ||||||||||||||||| || ||| ||||||||||||||||||||| | | || |||| |||| ||||||| ||| | | | | |
|
|
| T |
39389446 |
taaagggcatactgatgtgcaccattaccgcttactgcttgatcgcttagaggtggatgacgtcaggttttctagttatggtgatcacagagagatacac |
39389347 |
T |
|
| Q |
741 |
ccttttcaacttattaacacttactcaggatggctgatacgcgggaagg |
789 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
39389346 |
ccttttcagcttattgtcacttactcgggatggctgatgtgcgggaagg |
39389298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 544 - 788
Target Start/End: Complemental strand, 54603254 - 54603011
Alignment:
| Q |
544 |
agggatggattttgaagcatttgccaagtcagtacccaaagaaacataaca-ggagttggaagtcggagagatcatgcgcggggagatggcttactacca |
642 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| |||||||| ||| | |||| ||||| ||| | |||||||| ||| || | |||||| ||||||| || |
|
|
| T |
54603254 |
agggatggattttggagcatttgccaggtccgtacccaaggaagaaaaacaaggagt-ggacgccggagagaccatatgctgagagatgacttactagca |
54603156 |
T |
|
| Q |
643 |
gagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgccc |
742 |
Q |
| |
|
||| |||| | ||||||||||||||| | || ||| |||||||||||||||||||| | | || |||||||||| ||||||| ||| |||| ||| |
|
|
| T |
54603155 |
gaga-catactgatgtgcaccattaccggttactgcttgatcgcttagaggtggatgatgtcaggttttctacatatggtgatcacagagacgtgcaccc |
54603057 |
T |
|
| Q |
743 |
ttttcaacttattaacacttactcaggatggctgatacgcgggaag |
788 |
Q |
| |
|
||||| |||||| | |||||| ||||||||||| |||||||| |
|
|
| T |
54603056 |
atttcagcttattgtgatttactcgggatggctgatgtgcgggaag |
54603011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 85; Significance: 5e-40; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 546 - 907
Target Start/End: Original strand, 26816 - 27186
Alignment:
| Q |
546 |
ggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccagag |
645 |
Q |
| |
|
||||||||||| |||||||| || ||| ||||||| ||| | |||| |||||||||| |||||||| |||| || ||||||||| |||||| ||||| |
|
|
| T |
26816 |
ggatggatttttgagcatttgtcaggtccgtacccagggaagaaaaacaagagttggaagccggagagaccatgtgcagggagatggattactaacagag |
26915 |
T |
|
| Q |
646 |
ggcatatagttgtgca-------ccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgc |
738 |
Q |
| |
|
|||||| ||||||||| |||||||||| || || |||||||||||||||| ||| || ||||||||||||||||||||| ||| ||| |
|
|
| T |
26916 |
ggcatacagttgtgcagtgtgtaccattaccgcctactccttgatcgcttagaggtgggtgatgtgtggtggtctacatatgatgatcatagagaaatgc |
27015 |
T |
|
| Q |
739 |
gcccttttcaacttattaacacttactcaggatggctgatacgcgggaagggat-ggtgtaccttcatttaccttgac-ggttaagagacagtttgggtt |
836 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||| || || ||||||||| | |||||||| |||||||||| | | ||||| ||| |||||||| || |
|
|
| T |
27016 |
gcccttttcagcttattgtcacttactcgggataacttatgtgcgggaaggaaaaggtgtaccgtcatttacctgggcaggttacgagccagtttggctt |
27115 |
T |
|
| Q |
837 |
tgtacaggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttga |
907 |
Q |
| |
|
| ||| ||||||||| |||||| | ||||||||||||||| || ||||||||| |||||||| |||||| |
|
|
| T |
27116 |
taaacattacatccccagacatccatcagatgtccctgagatgccaaaggagatgttggctactttgttga |
27186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 542 - 811
Target Start/End: Complemental strand, 9039647 - 9039377
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacag-gagttggaagtcggagagatcatgcgcggggagatggcttactac |
640 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||| ||| | |||| |||| ||| |||||||||| |||| || |||||||||||||| | |
|
|
| T |
9039647 |
gcagggatggattttggagcatttgccaggtctgtacccaaggaagaaaaacaatgagt-ggacgtcggagagaccatgtgctgggagatggcttacatc |
9039549 |
T |
|
| Q |
641 |
cagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgc |
740 |
Q |
| |
|
|| || ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||| | | || ||||| |||| |||||| ||| | | ||| |
|
|
| T |
9039548 |
caaagagcataaagatgtgcaccattaccgctaacggcttgatcgcttagaggtggatgacgtaaggttttctacttatggtgatcatagagagatacgc |
9039449 |
T |
|
| Q |
741 |
ccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||||| ||||||||| || || ||||| |||||||||| |
|
|
| T |
9039448 |
ccttttcagcttattgtcacttactcaggatgactgatgtgcgggaaggagagggggtaccgtcatttacct |
9039377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 542 - 811
Target Start/End: Original strand, 19875987 - 19876257
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataaca-ggagttggaagtcggagagatcatgcgcggggagatggcttactac |
640 |
Q |
| |
|
||||||||||||||| |||||||| || ||| |||||||| ||| | |||| ||||| ||| | |||||||| |||| || |||||||||||||||| |
|
|
| T |
19875987 |
gcagggatggattttagagcatttgtcaggtctgtacccaaggaagaaaaacaaggagt-ggacgccggagagaccatgtgctgggagatggcttactag |
19876085 |
T |
|
| Q |
641 |
cagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgc |
740 |
Q |
| |
|
|||||||||||| | |||||||||||||||| || ||| ||||||||||||||||||| | | | || | ||| |||| ||||||| ||| | | ||| |
|
|
| T |
19876086 |
cagagggcatattgatgtgcaccattaccgcgtactgcttgatcgcttagaggtggatgtcgtcaggttttttacttatggtgatcacagagagatacgc |
19876185 |
T |
|
| Q |
741 |
ccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| ||||||||| || |||||||| |||||||||| |
|
|
| T |
19876186 |
ccttttcaacttattgtcacttactcgggatggctgatgtgcgggaaggagagggtgtaccgtcatttacct |
19876257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 542 - 811
Target Start/End: Original strand, 23066618 - 23066888
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaa---agaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttact |
638 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||| ||||||| || ||||| ||| | |||||||| |||| || | |||||||||||| |
|
|
| T |
23066618 |
gcagggatggattttggagcatttgccaggtccgtacccaaggaagaaacacaa--ggagt-ggacgccggagagaccatgtgctgcgagatggcttaca |
23066714 |
T |
|
| Q |
639 |
accagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgc |
738 |
Q |
| |
|
|| |||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||| | | || ||||| |||| ||||||| ||| | | | |
|
|
| T |
23066715 |
tgcaaagggcataaagatgtgtaccattaccgctcacggcttgatcgcttagaggtggatgacgtcaggttttctacttatggtgatcacagagagatac |
23066814 |
T |
|
| Q |
739 |
gcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||| ||||||||| || |||||||| |||||||||| |
|
|
| T |
23066815 |
acccttttaaacttattgtcacttactcgggatggctgatgtgcgggaaggagagggtgtaccatcatttacct |
23066888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 542 - 811
Target Start/End: Complemental strand, 37981015 - 37980745
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
||||||||| |||||| |||||||| || ||| |||||||| ||| | |||||| |||| | |||||||| |||| || |||||||||||||| | | |
|
|
| T |
37981015 |
gcagggatgaattttggagcatttgtcaggtccgtacccaaggaagaaaaacagggagtggacgccggagagaccatgtgctgggagatggcttacaagc |
37980916 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
| ||| |||| || |||||| |||||||||| ||| ||||||||||| |||||||||||| | | || ||||| |||| ||||||| ||| |||| || |
|
|
| T |
37980915 |
aaaggacataaagatgtgcatcattaccgcttacgtctggatcgctttgaggtggatgacgtcaggttttctacttatggtgatcacagagacgtgcacc |
37980816 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
| || || |||||| ||||||||| ||||||||||| ||||||||| || |||||||| |||||||||| |
|
|
| T |
37980815 |
cattccagcttattgtcacttactcgggatggctgatgtgcgggaaggagagggtgtaccgtcatttacct |
37980745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 548 - 811
Target Start/End: Original strand, 7252909 - 7253173
Alignment:
| Q |
548 |
atggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccagaggg |
647 |
Q |
| |
|
|||||||||| |||||||| || ||| |||||||| ||| | |||| |||||||||| |||||||| | || | | |||||||||||||| ||||||| |
|
|
| T |
7252909 |
atggattttggagcatttggcaggtccgtacccaaggaagaaaaacaagagttggaagccggagagaccgtgtgttgtgagatggcttactagcagaggg |
7253008 |
T |
|
| Q |
648 |
catatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcccttttc |
747 |
Q |
| |
|
|| | | |||||||||||||| || || ||| ||||||||||||||||||||| | | | ||||| |||| ||||||| ||| | | |||| |||| |
|
|
| T |
7253009 |
cacactgatgtgcaccattaccacttactgcttgatcgcttagaggtggatgacgtcagattttctacttatggtgatcacagagagatacgccattttt |
7253108 |
T |
|
| Q |
748 |
aacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
| |||||| ||||||||| ||||||||||| ||||||||| | |||||||| |||||||||| |
|
|
| T |
7253109 |
agcttattgtcacttactcgggatggctgatgtgcgggaaggagggggtgtaccgtcatttacct |
7253173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 8e-39; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 542 - 811
Target Start/End: Original strand, 31386896 - 31387166
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| |||||||| || ||| ||||||| ||| | |||| ||| |||||| |||||||| |||| || |||||||||||||||| | |
|
|
| T |
31386896 |
gcagggatggattttggagcatttgtcaggtccttacccaaggaagcctaacccgaggtggaagccggagagaccatgtgctgggagatggcttactagc |
31386995 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||| || ||| ||||||||||||| ||| |||||||||| |||||||||||| | | || ||||| |||| ||||||| ||| |||| || |
|
|
| T |
31386996 |
agagggcataaagatgtccaccattaccgcttacgtatggatcgcttggaggtggatgacgttaggttttctacttatggtgatcacagagacgtgcacc |
31387095 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
| ||||| ||||| ||||||||| |||||||| || ||||||||| || |||||||| |||||||||| |
|
|
| T |
31387096 |
catttcagcttatgtgcacttactcgggatggctcatgtgcgggaaggagagggtgtaccgtcatttacct |
31387166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 542 - 873
Target Start/End: Original strand, 50914246 - 50914579
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||| ||||||| ||| | |||| |||||||| | |||||||| |||| || |||||||||||||||| | |
|
|
| T |
50914246 |
gcagggatgaattttggagcatttgccaggtccatacccaaggaagaaaaacaagagttggacgccggagagaccatgtgctgggagatggcttactagc |
50914345 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||| | ||||||||||||||||| || ||| ||||||||||||||||||||| | | || ||||| |||| ||||||| ||| |||| || |
|
|
| T |
50914346 |
agagggcatactgatgtgcaccattaccgcttactgcttgatcgcttagaggtggatgacgtcaggttttctacttatggtgatcacagagacgtgcacc |
50914445 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct-tgacggttaagagacagtttgggtttgt |
839 |
Q |
| |
|
| ||||| ||| | ||||||| | |||||||| || ||||||||| || |||||||| |||||||||| | ||| ||||| ||||| ||||| |
|
|
| T |
50914446 |
catttcagcttctgtgcacttacccgggatggctcatgtgcgggaaggagagggtgtaccgtcatttacctgagcgggtaaagaggcagttatcctttgt |
50914545 |
T |
|
| Q |
840 |
acaggacatccccatacatccgttagatgtccct |
873 |
Q |
| |
|
||||||| | |||| |||||||| |||||||||| |
|
|
| T |
50914546 |
acaggacgttcccagacatccgtcagatgtccct |
50914579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 542 - 907
Target Start/End: Original strand, 18242321 - 18242688
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
||||||||| |||||| ||||||||| | || |||||||| ||| | |||||||| |||| | |||||| | |||| || |||||||||||||||| |
|
|
| T |
18242321 |
gcagggatgaattttggagcatttgctaggtttgtacccaaggaagaaaaacaggagctggacgccggagataccatgtgctgggagatggcttactagt |
18242420 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||| | |||||||||||| | || || ||| ||||||||||||||||||||| | |||| ||||| |||| ||||||| ||| |||| || |
|
|
| T |
18242421 |
agagggcatactgatgtgcaccattaacacttactgcttgatcgcttagaggtggatgacgtcaagttttctacttatggtgatcacagagacgtgcacc |
18242520 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct-tgacggttaagagacagtttgggtttgt |
839 |
Q |
| |
|
| ||||| ||||| |||||||| ||||| || || ||||||||| || ||||||| |||||||||| | ||| ||||||||||| ||||| |
|
|
| T |
18242521 |
catttcagcttatgtgcacttacttgggatgactcatgtgcgggaaggagagggtgtactgtcatttacctgagcgggtaaagagacagttatcctttgt |
18242620 |
T |
|
| Q |
840 |
acaggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttga |
907 |
Q |
| |
|
||| ||| | |||| |||||||| |||||||||| || | |||| | || ||||| | |||||||||| |
|
|
| T |
18242621 |
acaagacgttcccagacatccgtaagatgtccctcaggtgcctacgcagttgctgaccactgtgttga |
18242688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 542 - 701
Target Start/End: Complemental strand, 4912690 - 4912531
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||| ||| | |||| | | |||||| |||||| | |||| || |||||||||||||||| |
|
|
| T |
4912690 |
gcagggatggattttggagcatttgccaggtccttacccaaggaagcctaacccggggtggaagccggagataccatgtgctgggagatggcttactatt |
4912591 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||| || |||||||| ||||||| |||| |
|
|
| T |
4912590 |
agagggcataaagatgtgcaccattaccgcttacgcctagatcgcttggaggtgggtgac |
4912531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 542 - 907
Target Start/End: Complemental strand, 42464377 - 42464010
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||| ||||||| | | | |||| | | ||||| |||||||| |||| || |||||||| ||||||| | |
|
|
| T |
42464377 |
gcagggatgaattttggagcatttgccaggtccttacccaagggagcctaacccggggcggaagccggagagaccatgtgctgggagatgacttactagc |
42464278 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
|||||||||| || |||||||||| |||||| ||| |||||||||| |||||||||||| | | || ||||| |||| |||||| ||| |||| | |
|
|
| T |
42464277 |
agagggcataaagatgtgcaccatcaccgcttacgtatggatcgcttggaggtggatgacgtcaggttttctacttatggtgatcatagagacgtgcatc |
42464178 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct-tgacggttaagagacagtttgggtttgt |
839 |
Q |
| |
|
| ||||| ||| | ||||||||| |||||||| || ||||||||| ||||||||||| |||||||||| | ||| ||||| ||||| ||||| |
|
|
| T |
42464177 |
catttcagcttctgtgcacttactcgggatggctcatgtgcgggaaggagatggtgtaccgtcatttacctgagtgggtaaagaggcagttatcctttgt |
42464078 |
T |
|
| Q |
840 |
acaggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttga |
907 |
Q |
| |
|
| ||||| | |||| |||||||| |||||||||| || | |||| | || ||||| | |||||||||| |
|
|
| T |
42464077 |
ataggacgttcccagacatccgtcagatgtccctcaggtgcctacgcagttgctgaccactgtgttga |
42464010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 700
Target Start/End: Complemental strand, 46193047 - 46192889
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaa-acataacaggagttggaagtcggagagatcatgcgcggggagatggcttactac |
640 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||| ||||||| ||| | | || | |||| ||| |||||||||| |||| || || |||||| |||| |
|
|
| T |
46193047 |
gcagggatgaattttggagcatttgccaggtccatacccaaggaagaaaaaaaacgagt-ggacgtcggagagaccatgtgctggaagatggtttacatg |
46192949 |
T |
|
| Q |
641 |
cagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatga |
700 |
Q |
| |
|
|| |||||||| || |||||||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
46192948 |
caaagggcataaagatgtgcaccattaccacttacggcttgatcgcttagaggtggatga |
46192889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 627 - 701
Target Start/End: Complemental strand, 27106694 - 27106620
Alignment:
| Q |
627 |
agatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
||||||||||||| |||||| |||| || | ||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
27106694 |
agatggcttactagcagaggacataaagatatgcaccattaccgcttacgcatggatcgcttggaggtggatgac |
27106620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 624 - 911
Target Start/End: Complemental strand, 28508073 - 28507784
Alignment:
| Q |
624 |
gggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatg |
723 |
Q |
| |
|
|||||||||||||||| |||||||| | | ||||||||||||| | || || |||||| || |||||||||| |||||||||||||||| ||| |
|
|
| T |
28508073 |
gggagatggcttactagaagagggcaaacaacggtgcaccattaccaccgactcctagatcgcatatgggtggatgacgcgaagtggtctacatatcatg |
28507974 |
T |
|
| Q |
724 |
atcaccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct-tgacggttaa |
821 |
Q |
| |
|
||||| ||| |||||||| |||||| ||||| |||||||||| |||||||||| ||||||||| || |||||||| |||||||||| | ||| || |
|
|
| T |
28507973 |
atcacagagcggtgcgccattttcagattatttgcacttactcaagatggctgatttgcgggaaggagagggtgtaccgtcatttacctaagcgggtgaa |
28507874 |
T |
|
| Q |
822 |
gagacagtttgggtttgtacaggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttgaaaga |
911 |
Q |
| |
|
||| |||||||||| | | ||||||||||||| |||||||| ||||||||||||||||| | ||| ||| |||||| |||||| ||||| |
|
|
| T |
28507873 |
gaggcagtttgggtatatgcaggacatccccaaacatccgtcagatgtccctgagattcttgtggatatgatggctaatgtgttcaaaga |
28507784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 626 - 907
Target Start/End: Complemental strand, 11405752 - 11405470
Alignment:
| Q |
626 |
gagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgat |
725 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| |||||||||| ||| || |||||||||||||||||| | ||| || ||||| |||| |||| |
|
|
| T |
11405752 |
gagatggcttactagtagagggcatatagatgtgcaacattaccgcttacg-ctagatcgcttagaggtggataatttgaggttttctacttatggtgat |
11405654 |
T |
|
| Q |
726 |
caccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacctt-gacggttaaga |
823 |
Q |
| |
|
||| ||| ||| |||||||||| ||| | ||||||||| |||||||||| ||||| ||| || |||||||| |||||||||| || ||| |||| |
|
|
| T |
11405653 |
cacagagaagtgtgcccttttcagcttctgtgcacttactcgagatggctgatgtgcgggtaggagagggtgtaccgtcatttacctgagagggtaaaga |
11405554 |
T |
|
| Q |
824 |
gacagtttgggtttgtacaggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttga |
907 |
Q |
| |
|
| |||||| ||| ||||| ||||||||| |||||||| |||| |||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
11405553 |
ggaagtttgactttatacagtacatccccagacatccgtcagatatccctgagatgcctaaggagatgatggctactgtattga |
11405470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 546 - 811
Target Start/End: Complemental strand, 6321596 - 6321331
Alignment:
| Q |
546 |
ggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccagag |
645 |
Q |
| |
|
||||| |||||| ||||||||||| ||| |||||||| ||| | |||| | ||||| | |||||||| |||| || |||||||||||||||| || || |
|
|
| T |
6321596 |
ggatgaattttggagcatttgccaggtctgtacccaaggaataaaaacaaggattggacgccggagagaccatgtgctgggagatggcttactagcatag |
6321497 |
T |
|
| Q |
646 |
ggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcccttt |
745 |
Q |
| |
|
|||||| | ||||||||||||||||| || ||| ||||||||||||||||||||| | |||| ||||| |||| ||||||| ||| | || || || |
|
|
| T |
6321496 |
ggcataatgatgtgcaccattaccgcttactgcttgatcgcttagaggtggatgacgtcaagttttctacttatggtgatcacagagacgagc-accatt |
6321398 |
T |
|
| Q |
746 |
tcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
||| |||||| ||| ||||| ||||||||||| ||| ||||| || |||||||| |||||||||| |
|
|
| T |
6321397 |
tcagcttattgtcacgtactcgggatggctgatgtgcgagaaggagagggtgtaccgtcatttacct |
6321331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 542 - 789
Target Start/End: Original strand, 10553980 - 10554227
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||| ||| | |||||| |||| | |||||||||||| || ||||||||| |||| | | |
|
|
| T |
10553980 |
gcagggatggattttggagcatttgccatgtccgtacccaaggaagaaaaacagggagtggacgctggagagatcatgtgctgggagatggtttacaagc |
10554079 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgcc |
741 |
Q |
| |
|
| ||| |||| || ||||||||||||||||| ||| ||||||||||| ||||||||||| | | || ||||| |||| ||||||| ||| |||| || |
|
|
| T |
10554080 |
aaaggacataaagatgtgcaccattaccgcttacgcctggatcgcttgaaggtggatgacgtcaggttttctacttatggtgatcacagagacgtgcacc |
10554179 |
T |
|
| Q |
742 |
cttttcaacttattaacacttactcaggatggctgatacgcgggaagg |
789 |
Q |
| |
|
| || || |||||| ||||||||| ||||||||| | ||||||||| |
|
|
| T |
10554180 |
cattccagcttattgtcacttactcgggatggctggtgtgcgggaagg |
10554227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 542 - 701
Target Start/End: Original strand, 41963697 - 41963856
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataaca-ggagttggaagtcggagagatcatgcgcggggagatggcttactac |
640 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||| ||| | |||| ||||| ||| |||| ||||| |||| || ||||||||||| ||| |
|
|
| T |
41963697 |
gcagggatggattttgaagcatttgtcaggttcgtacccaaggaagaaaaacaaggagt-ggacgtcgaagagaccatgtgctaggagatggcttgctag |
41963795 |
T |
|
| Q |
641 |
cagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
|||| |||||| | ||||||||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
41963796 |
cagatggcatactgatgtgcaccattaccgcttactgcttgatcgcttagaggtggatgac |
41963856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 609 - 811
Target Start/End: Complemental strand, 46527104 - 46526901
Alignment:
| Q |
609 |
gagagatcatgcgcggggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagt |
708 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||| |||| | ||| | |||| ||||||| |||| || ||| ||||||||| ||||||||||| | | | |
|
|
| T |
46527104 |
gagagaccatacgctgggagatggcttactagcagatgatatactgatgtgtaccattatcgcttactgcttgatcgcttataggtggatgacgtcagat |
46527005 |
T |
|
| Q |
709 |
ggtctacatatgatgatcaccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcattt |
807 |
Q |
| |
|
||||| |||| ||||||| |||| |||| || ||||| |||||| ||||||||| ||||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
46527004 |
tttctacttatggtgatcacagagtcgtgcatccatttcagcttattgtcacttactcgggatggctgatgtgcgggaaggatatggtgtaccgtcattt |
46526905 |
T |
|
| Q |
808 |
acct |
811 |
Q |
| |
|
|||| |
|
|
| T |
46526904 |
acct |
46526901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 816 - 906
Target Start/End: Original strand, 3939572 - 3939662
Alignment:
| Q |
816 |
ggttaagagacagtttgggtttgtacaggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttg |
906 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||||| || |||||||| ||||||||||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
3939572 |
ggttaagaggcagtttggatttatacataacatctgcagacatccgtcagatgtccctgagatgcctaaggagatgcttgctactttgttg |
3939662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 845 - 907
Target Start/End: Complemental strand, 11382162 - 11382100
Alignment:
| Q |
845 |
acatccccatacatccgttagatgtccctgagattcctaaggagatgctggctactgtgttga |
907 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||||||||| ||| |||||| |||| |
|
|
| T |
11382162 |
acatccccagacatccgtcagatgtccctgagatgcctaaggagatgatggttactgtattga |
11382100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 816 - 898
Target Start/End: Complemental strand, 11406197 - 11406115
Alignment:
| Q |
816 |
ggttaagagacagtttgggtttgtacaggacatccccatacatccgttagatgtccctgagattcctaaggagatgctggcta |
898 |
Q |
| |
|
||||||||| |||||||| ||| ||| |||||| | || |||||||| | | |||||||||| ||||||||||||||||||| |
|
|
| T |
11406197 |
ggttaagaggcagtttggctttatactggacattctcaaacatccgtcaattctccctgagatgcctaaggagatgctggcta |
11406115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1868 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold1868
Description:
Target: scaffold1868; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 542 - 701
Target Start/End: Complemental strand, 381 - 222
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||| ||| | |||| ||| |||| |||||||||| || | || |||||||||||||||| | |
|
|
| T |
381 |
gcagggatggattttggagcatttgccaggtccgtacccaatgaagaaaaacaagagctggacgtcggagagaccacgtgctgggagatggcttactagc |
282 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
|| |||||||| | ||||||||||||||||| || ||| ||| ||||||||||||||||| |
|
|
| T |
281 |
agggggcatattgatgtgcaccattaccgcttactgcttgattgcttagaggtggatgac |
222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 7e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 542 - 811
Target Start/End: Original strand, 5619686 - 5619956
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaa-acataacaggagttggaagtcggagagatcatgcgcggggagatggcttactac |
640 |
Q |
| |
|
|||||||||||||||| ||||||| || ||| |||||||| ||| ||| |||| ||| |||||| |||||||| ||| || ||||||||||||||| |
|
|
| T |
5619686 |
gcagggatggattttggagcatttatcaggtccgtacccaaggaagaca-aacaagagctggaagccggagagaccatatgcttggagatggcttactag |
5619784 |
T |
|
| Q |
641 |
cagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatgatcaccgagtggtgcgc |
740 |
Q |
| |
|
|||||||||| | ||||||||||||||||| || ||| ||||| ||||||||||||||| | | || ||||| |||| ||||||| ||| | | | |
|
|
| T |
5619785 |
tagagggcatactgatgtgcaccattaccgcttactgcttgatcgtttagaggtggatgacgtcaggttttctacttatggtgatcacagagagatacat |
5619884 |
T |
|
| Q |
741 |
ccttttcaacttattaacacttactcaggatggctgatacgcgggaagg-gatggtgtaccttcatttacct |
811 |
Q |
| |
|
|||||||| |||||| ||||||||| | ||||||||| ||||||||| || |||||||| |||||||||| |
|
|
| T |
5619885 |
ccttttcagcttattgtcacttactcggaatggctgatgtgcgggaaggagagggtgtaccgtcatttacct |
5619956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 559 - 701
Target Start/End: Complemental strand, 33523051 - 33522909
Alignment:
| Q |
559 |
agcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactaccagagggcatatagttgt |
658 |
Q |
| |
|
||||||||||| || |||||||| ||| | |||| ||| |||||| |||||||| |||| || |||||||||||||||| ||||||||||| | ||| |
|
|
| T |
33523051 |
agcatttgccaggtttgtacccaaggaagcctaacccgaggtggaagccggagagaccatgtgctgggagatggcttactagcagagggcataaatatgt |
33522952 |
T |
|
| Q |
659 |
gcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
33522951 |
gcaccgttactgcttacggctggatcgcttagaggtggatgac |
33522909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 624 - 862
Target Start/End: Complemental strand, 19269427 - 19269187
Alignment:
| Q |
624 |
gggagatggcttactaccagagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgacatgaagtggtctacatatgatg |
723 |
Q |
| |
|
|||| ||||||||||| ||||||| ||| | | ||||||||||||||| | |||| ||||||||||||||| |||| ||| || | ||| |||| || |
|
|
| T |
19269427 |
gggaaatggcttactagcagagggaataatgatatgcaccattaccgcttatggcttgatcgcttagaggtgaatgatgtgaggttttgtacttatggtg |
19269328 |
T |
|
| Q |
724 |
atcaccgagtggtgcgcccttttcaacttattaacacttactcaggatggctgatacgcgggaa-gggatggtgtaccttcatttaccttgacggtta-a |
821 |
Q |
| |
|
|||| ||| ||||||||| |||| ||| | ||||||||| |||||| |||| || |||| | || |||||||| |||||||||| ||| || | |
|
|
| T |
19269327 |
atcatagaggagtgcgccctgttcagcttctgtgcacttactcgggatggatgatgtgcaggaatgagagggtgtaccgtcatttacctgagcgggtata |
19269228 |
T |
|
| Q |
822 |
gagacagtttgggtttgtacaggacatccccatacatccgt |
862 |
Q |
| |
|
||| ||||||| ||||||||| ||| | ||||||||||||| |
|
|
| T |
19269227 |
gaggcagtttgagtttgtacaagacgttcccatacatccgt |
19269187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 542 - 701
Target Start/End: Complemental strand, 18950 - 18791
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| || |||||| | ||| |||||||| ||| | |||| ||| |||| | |||||||| |||| || |||||||||||||||| | |
|
|
| T |
18950 |
gcagggatggattttggagtatttgcaaggtcggtacccaaggaagaaaaacaagagctggacgccggagagaccatgtgctgggagatggcttactagc |
18851 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
|||||||||| |||||||||||| |||| || ||| |||| |||||||||||||||| |
|
|
| T |
18850 |
agagggcatacttatgtgcaccattatcgcttactgcttgatctcttagaggtggatgac |
18791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 542 - 701
Target Start/End: Original strand, 53894 - 54053
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| || |||||| | ||| |||||||| ||| | |||| ||| |||| | |||||||| |||| || |||||||||||||||| | |
|
|
| T |
53894 |
gcagggatggattttggagtatttgcaaggtcggtacccaaggaagaaaaacaagagctggacgccggagagaccatgtgctgggagatggcttactagc |
53993 |
T |
|
| Q |
642 |
agagggcatatagttgtgcaccattaccgctcacggctggatcgcttagaggtggatgac |
701 |
Q |
| |
|
|||||||||| |||||||||||| |||| || ||| |||| |||||||||||||||| |
|
|
| T |
53994 |
agagggcatacttatgtgcaccattatcgcttactgcttgatctcttagaggtggatgac |
54053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0850 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0850
Description:
Target: scaffold0850; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 542 - 662
Target Start/End: Original strand, 4816 - 4936
Alignment:
| Q |
542 |
gcagggatggattttgaagcatttgccaagtcagtacccaaagaaacataacaggagttggaagtcggagagatcatgcgcggggagatggcttactacc |
641 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||| |||||||| ||| | || ||||| |||||| | |||||| |||| || |||||||||||||||| |
|
|
| T |
4816 |
gcagggatggattttggagcattttccaggtccgtacccaaggaagaaaaataggagctggaagcctgagagaccatgtgctgggagatggcttactaga |
4915 |
T |
|
| Q |
642 |
agagggcatatagttgtgcac |
662 |
Q |
| |
|
|||||||||| || ||||||| |
|
|
| T |
4916 |
agagggcatacagatgtgcac |
4936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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