View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5494-Insertion-6 (Length: 795)

Name: NF5494-Insertion-6
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5494-Insertion-6
NF5494-Insertion-6
[»] chr5 (3 HSPs)
chr5 (324-795)||(38120584-38121055)
chr5 (4-153)||(38121272-38121421)
chr5 (244-332)||(38121094-38121182)


Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 324 - 795
Target Start/End: Complemental strand, 38121055 - 38120584
Alignment:
Q  324 aaaataaaattaaggaaaaagagctaggaagacgaagagaaatagagtttgaactaaccaaacttgtgctttgttcttactgaaaagaaaaacagtgtga 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38121055 aaaataaaattaaggaaaaagagctaggaagacgaagagaaatagagtttgaactaaccaaacttgtgctttgttcttactgaaaagaaaaacagtgtga 38120956  T
Q  424 agtaaccaaagataatgaagagggtaaagtgtttggttaaagagaaagatagcatgattctatttatagtaagtgtgatatcatgatgaatatgattggt 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38120955 agtaaccaaagataatgaagagggtaaagtgtttggttaaagagaaagatagcatgattctatttatagtaagtgtgatatcatgatgaatatgattggt 38120856  T
Q  524 ggctaaccttcaattgcaaaacggtaacttaacaaagaagttgaagctgaaccgaaaccaactcctttagtataaataagacacaataataatatcacat 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38120855 ggctaaccttcaattgcaaaacggtaacttaacaaagaagttgaagctgaaccgaaaccaactcctttagtataaataagacacaataataatatcacat 38120756  T
Q  624 ttgcctcttcaaatgtttacttttcttgcagtggttacaaaacgtttagnnnnnnnaataatagttgcattgcatagtcatgagtatcattagcacaact 723  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  38120755 ttgcctcttcaaatgtttacttttcttgcagtggttacaaaacgtttagttttcttaataatagttgcattgcatagtcatgagtatcattagcacaact 38120656  T
Q  724 ttggtattaattaacatagttattctgcttcatcacttcaccacaccatcgttgcatcatcttctacattcc 795  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38120655 ttggtattaattaacatagttattctgcttcatcacttcaccacaccatcgttgcatcatcttctacattcc 38120584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 38121421 - 38121272
Alignment:
Q  4 aacacaagattcatcacacaaacgaaaacatccgagaatattttcgaaaacatagggctaaatcagagcttatgggagacgtaaagagtaattaaagcac 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38121421 aacacaagattcatcacacaaacgaaaacatacgagaatattttcgaaaacatagggctaaatcagagcttatgggagacgtaaagagtaattaaagcac 38121322  T
Q  104 aaattaaagcaaataaggttcacattgtgaaataaaactcagtttaggac 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38121321 aaattaaagcaaataaggttcacattgtgaaataaaactcagtttaggac 38121272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 38121182 - 38121094
Alignment:
Q  244 cttgtgtttaccacattacaaaataaaaacatgcaaagttaagataaaaactacatgaacattaccagttaccacattacaaaataaaa 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38121182 cttgtgtttaccacattacaaaataaaaacatgcaaagttaagataaaaactacatgaacattaccagttaccacattacaaaataaaa 38121094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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