View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5494-Insertion-8 (Length: 457)
Name: NF5494-Insertion-8
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 42773144 - 42773207
Alignment:
| Q |
8 |
ggaaccttaactcttttycaattaacgagttactctagataccgaccaaacatgttactcttct |
71 |
Q |
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| T |
42773144 |
ggaaccttaactcttttccaattaacgagttactctagataccgaccaaacatgttactcttct |
42773207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 42769886 - 42769779
Alignment:
| Q |
123 |
atttctccactattttgctagttatgttaatgatgaaaaaataaaattgttgtnnnnnnnnncaatggtgaactgaataaacaaataaatgttagagaca |
222 |
Q |
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| T |
42769886 |
atttctccactattttgctagttatgttaatgatgtaataataaaactgat------taataaaatggtgaattgaataaacaagtaaatgttagagaca |
42769793 |
T |
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| Q |
223 |
caccaaattaataa |
236 |
Q |
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| T |
42769792 |
caccatatcaataa |
42769779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 42771113 - 42771152
Alignment:
| Q |
186 |
aatggtgaactgaataaacaaataaatgttagagacacac |
225 |
Q |
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| T |
42771113 |
aatggtgaattgaataaacaaataaatgttagagatacac |
42771152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 391
Target Start/End: Original strand, 42771287 - 42771322
Alignment:
| Q |
356 |
aaagtatagaatacaaagtggtaaattaggtacctc |
391 |
Q |
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| T |
42771287 |
aaagtatacaatacaaagtggtaaattaggtacctc |
42771322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 19196092 - 19196122
Alignment:
| Q |
193 |
aactgaataaacaaataaatgttagagacac |
223 |
Q |
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| T |
19196092 |
aactgaataaacaaataaatgttagagacac |
19196122 |
T |
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