View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5494-Insertion-9 (Length: 432)
Name: NF5494-Insertion-9
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494-Insertion-9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 198 - 432
Target Start/End: Complemental strand, 30076526 - 30076292
Alignment:
| Q |
198 |
tacacaaatttttcatcaaacgacttagatttcccactacattaattcatgatgggcatagtctccggtggataagtttattatttctctcaccgtaagc |
297 |
Q |
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| T |
30076526 |
tacacaaatttttcatcaaacgacttagatttcccactacattaattcatgatgggcatagtctccggtggataagtttattatttctctcaccgtaagc |
30076427 |
T |
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| Q |
298 |
actgtagcaatgagttaccgttcgatgatcttggttgtccattattttaatattatatcgcatggnnnnnnnctcactcatttataatgagagacatgat |
397 |
Q |
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| T |
30076426 |
actgtagcaatgagttaccgttcaacgatcttggttgtccattactttaatattatatcgcatggaaaaaaactcactcacttatagtgagagacatgat |
30076327 |
T |
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| Q |
398 |
aaactcatccacccgagactaagcctcttttgtgt |
432 |
Q |
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| T |
30076326 |
aaactcatccaccggagactaagcctcttttgtgt |
30076292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 30077307 - 30077109
Alignment:
| Q |
8 |
tttatttggataaattatttgccacagtcatgtaaatttggaaatctagatgtgtgacttggattctcaatagcaaggagaattatgcattcacgtaatc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077307 |
tttatttggataaattatttgccacagtcatgtaaatttggaaatctagatgtgtgacttggattctcaatagcaaggagaattatgcattcacgtaata |
30077208 |
T |
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| Q |
108 |
tagattaatgaaaatcgttaattatagtcatacgatgaagagtattttacttgtatgtatgttttaaaatgtaactcaaactacaaaccatacacaaat |
206 |
Q |
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| T |
30077207 |
tagattaacgaaaatcgttaattatagtcatacgatgaagagtattttacttgtatgtatgttttaaaatgtaactcaaactataaaccatacacaaat |
30077109 |
T |
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