View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5494_high_1 (Length: 496)

Name: NF5494_high_1
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5494_high_1
NF5494_high_1
[»] chr4 (7 HSPs)
chr4 (103-486)||(10977763-10978141)
chr4 (20-108)||(10783006-10783094)
chr4 (252-363)||(38937462-38937573)
chr4 (250-357)||(46551147-46551254)
chr4 (172-221)||(38937384-38937433)
chr4 (21-57)||(9263946-9263982)
chr4 (21-57)||(11520081-11520117)
[»] chr6 (4 HSPs)
chr6 (80-169)||(24253059-24253148)
chr6 (72-169)||(22566920-22567017)
chr6 (22-61)||(10821666-10821705)
chr6 (21-57)||(30355698-30355734)
[»] scaffold0041 (1 HSPs)
scaffold0041 (275-363)||(93605-93692)
[»] chr7 (6 HSPs)
chr7 (275-363)||(40872590-40872677)
chr7 (20-60)||(8158443-8158483)
chr7 (22-57)||(8038503-8038538)
chr7 (20-57)||(2454807-2454844)
chr7 (20-57)||(5485081-5485118)
chr7 (20-57)||(9501430-9501467)
[»] chr8 (5 HSPs)
chr8 (84-173)||(24537491-24537580)
chr8 (20-57)||(24851494-24851531)
chr8 (21-57)||(24114834-24114870)
chr8 (84-144)||(26825904-26825964)
chr8 (20-56)||(30487299-30487335)
[»] chr3 (5 HSPs)
chr3 (77-160)||(11224049-11224131)
chr3 (84-137)||(16230717-16230770)
chr3 (84-159)||(3398548-3398623)
chr3 (96-146)||(3387140-3387190)
chr3 (20-57)||(13907216-13907253)
[»] chr5 (3 HSPs)
chr5 (171-239)||(29007502-29007570)
chr5 (84-151)||(20550067-20550134)
chr5 (84-137)||(24187819-24187872)
[»] scaffold0427 (1 HSPs)
scaffold0427 (74-159)||(4736-4821)
[»] scaffold0085 (1 HSPs)
scaffold0085 (20-57)||(23474-23511)
[»] chr2 (1 HSPs)
chr2 (111-148)||(29652690-29652727)
[»] chr1 (1 HSPs)
chr1 (20-61)||(26581070-26581111)
[»] scaffold0472 (1 HSPs)
scaffold0472 (275-363)||(8705-8792)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 103 - 486
Target Start/End: Original strand, 10977763 - 10978141
Alignment:
Q  103 acctattccacacaataataacaagttcgagaaaatttcctaacaaagataaggttgcacttaattttaaagcgtaatgcttgatattgcgataactttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10977763 acctattccacacaataataacaagttcgagaaaatttcctaacaaagataaggttgcacttaattttaaagcgtaatgcttgatatcgcgataactttt 10977862  T
Q  203 atcacgaattcttcacaaccgtacaatacaagctaccnnnnnnnnncttccaccaaatcccgaatttcattcattgagcggtttaagcacgttttattaa 302  Q
    |||| ||||||||||  || ||||||||||||| |||          ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10977863 atcaggaattcttcatgactgtacaatacaagcaaccttttt-----ttccaccaaatccggaatttcattcattgagcggtttaagcacgttttattaa 10977957  T
Q  303 agcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctcaattttaaattgtttaggttggtgtcgattccaaattgg 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10977958 agcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctcaattttaaattgtttaggttggtgttgattccaaattgg 10978057  T
Q  403 ttacttgactcgattgactctaatgacctaaatactattatgcaatgaaaatttgatctaaattaaatgctattattacctatg 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10978058 ttacttgactcgattgactctaatgacctaaatactattatgcaatgcaaatttgatctaaattaaatgctattattacctatg 10978141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 10783006 - 10783094
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgcttcattccgattgtcaccacttgtgcgtctttggttgcttccatggttacctat 108  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  10783006 tgaagctcctagtgctttccttcctcttgaaccacttcattccgattgtcaccacttatgcgtctttggttgtttccatggttacctat 10783094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 38937462 - 38937573
Alignment:
Q  252 ccaccaaatcccgaatttcattcattgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggat 351  Q
    ||||||||||| ||||||   | |||||||||||||  ||||||||||||||||||||||| |||||||||||||||   |||||||||||| |||||||    
T  38937462 ccaccaaatccggaatttaggtgattgagcggtttagccacgttttattaaagcaatattgcacttcgtggaatttttgggaaaagaattgtggctggat 38937561  T
Q  352 ttagcagcgctc 363  Q
    ||||| ||||||    
T  38937562 ttagcggcgctc 38937573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 46551254 - 46551147
Alignment:
Q  250 ttccaccaaatcccgaatttcattcattgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctgg 349  Q
    ||||||||||||  ||||||   | ||||||| ||||| ||||||||| ||||||||| | ||   |||||||||||||   |||||  |||||||||||    
T  46551254 ttccaccaaatctggaatttaggtgattgagcagtttaggcacgttttcttaaagcaaaaatgcggttcgtggaatttttgggaaaatgattgtcgctgg 46551155  T
Q  350 atttagca 357  Q
    ||||||||    
T  46551154 atttagca 46551147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 38937384 - 38937433
Alignment:
Q  172 aagcgtaatgcttgatattgcgataacttttatcacgaattcttcacaac 221  Q
    |||| ||||||||||||| |||| ||||||||||||||||  ||||||||    
T  38937384 aagcataatgcttgatatcgcgacaacttttatcacgaatgtttcacaac 38937433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 9263982 - 9263946
Alignment:
Q  21 gaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  9263982 gaagctcctagtgtttgccttcctcttgaaccacttc 9263946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 11520117 - 11520081
Alignment:
Q  21 gaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  11520117 gaagctcctagtgtttaccttcctcttgaaccacttc 11520081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 24253148 - 24253059
Alignment:
Q  80 cgtctttggttgcttccatggttacctattccacacaataataacaagttcgagaaaatttcctaacaaagataaggttgcacttaattt 169  Q
    |||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  24253148 cgtctttggttgcttccatgattacctatttcacacaataatcacaagttcgagaaaatttcctaacaatgataaggttgcgcttgattt 24253059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 22567017 - 22566920
Alignment:
Q  72 cacttgtgcgtctttggttgcttccatggttacctattccacacaataataacaagttcgagaaaatttcctaacaaagataaggttgcacttaattt 169  Q
    ||||||||||||||| ||||||||  || ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| ||||    
T  22567017 cacttgtgcgtctttagttgcttctgtgattacctatttcacacaataatcacaagctcgagaaaatttcctaacaatgataaggttgctcttgattt 22566920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 10821666 - 10821705
Alignment:
Q  22 aagctcctagtgttttccttcctcttgaaccgcttcattc 61  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  10821666 aagctcttagtgtttgccttcctcttgaaccgcttcattc 10821705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 30355698 - 30355734
Alignment:
Q  21 gaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    ||||||||||||| || ||||||||||||||||||||    
T  30355698 gaagctcctagtgcttgccttcctcttgaaccgcttc 30355734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 275 - 363
Target Start/End: Complemental strand, 93692 - 93605
Alignment:
Q  275 attgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctc 363  Q
    |||||||||||||  ||||||||||||| |||| || | ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  93692 attgagcggtttagccacgttttattaaggcaaaat-gcacttcgtggaattttcgggaaaagaattgtcgctggatttagcagcgctc 93605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 40872590 - 40872677
Alignment:
Q  275 attgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctc 363  Q
    |||||||||||||  ||||||||||||| |||| || | ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  40872590 attgagcggtttagccacgttttattaaggcaaaat-gcacttcgtggaattttcgggaaaagaattgtcgctggatttagcagcgctc 40872677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 8158443 - 8158483
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgcttcatt 60  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  8158443 tgaagctcctagtgtttgccttcctcttgaaccacttcatt 8158483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 8038503 - 8038538
Alignment:
Q  22 aagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    ||||||||||||||||||||||||||||||| ||||    
T  8038503 aagctcctagtgttttccttcctcttgaaccacttc 8038538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 2454807 - 2454844
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    ||||||||||| || |||||||||||||||||||||||    
T  2454807 tgaagctcctaatgctttccttcctcttgaaccgcttc 2454844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 5485081 - 5485118
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  5485081 tgaagctcctagtgcttttcttcctcttgaaccgcttc 5485118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 9501430 - 9501467
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  9501430 tgaagctcccagtgatttccttcctcttgaaccgcttc 9501467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 24537491 - 24537580
Alignment:
Q  84 tttggttgcttccatggttacctattccacacaataataacaagttcgagaaaatttcctaacaaagataaggttgcacttaattttaaa 173  Q
    |||||||| ||||||||||||||||| |||||||||||  || ||||||||||||||||||||||  ||||| ||||  || ||||||||    
T  24537491 tttggttgattccatggttacctatttcacacaataattgcaggttcgagaaaatttcctaacaataataagtttgcgattgattttaaa 24537580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 24851531 - 24851494
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  24851531 tgaagcttctagtgtttgccttcctcttgaaccgcttc 24851494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 24114870 - 24114834
Alignment:
Q  21 gaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    ||||||||||||| || ||||||||||||||||||||    
T  24114870 gaagctcctagtggttgccttcctcttgaaccgcttc 24114834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 26825964 - 26825904
Alignment:
Q  84 tttggttgcttccatggttacctattccacacaataataacaagttcgagaaaatttccta 144  Q
    |||||||| |||||| |||||||||| |||||||||||  ||| ||||| |||| ||||||    
T  26825964 tttggttgattccattgttacctatttcacacaataattgcaacttcgaaaaaaattccta 26825904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 30487299 - 30487335
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgctt 56  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  30487299 tgaagctactagtgtttgccttcctcttgaaccgctt 30487335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 11224049 - 11224131
Alignment:
Q  77 gtgcgtctttggttgcttccatggttacctattccacacaataataacaagttcgagaaaatttcctaacaaagataaggttgc 160  Q
    |||||||||||||||||| |||||||| ||| | ||||||||||| || |||||||  |||||||||||||||||||| |||||    
T  11224049 gtgcgtctttggttgctttcatggttagctaattcacacaataatcactagttcga-taaatttcctaacaaagataatgttgc 11224131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 16230770 - 16230717
Alignment:
Q  84 tttggttgcttccatggttacctattccacacaataataacaagttcgagaaaa 137  Q
    ||||||||  |||||||||||||||| |||||||||||  ||||||||||||||    
T  16230770 tttggttgagtccatggttacctatttcacacaataattgcaagttcgagaaaa 16230717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 3398623 - 3398548
Alignment:
Q  84 tttggttgcttccatggttacctattccacacaataataacaagttcgagaaaatttcctaacaaagataaggttg 159  Q
    |||||||| || |||| ||||||||| |||||||||||  |||||| |||| ||||||||||| |  |||||||||    
T  3398623 tttggttgattacatgattacctatttcacacaataattgcaagtttgagataatttcctaacgagaataaggttg 3398548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 3387190 - 3387140
Alignment:
Q  96 catggttacctattccacacaataataacaagttcgagaaaatttcctaac 146  Q
    |||| ||||||||| |||||||||||  ||| |||||||||||||||||||    
T  3387190 catgattacctatttcacacaataatttcaaattcgagaaaatttcctaac 3387140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 13907253 - 13907216
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    |||||||||||||| || ||||||||||||||||||||    
T  13907253 tgaagctcctagtgcttgccttcctcttgaaccgcttc 13907216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 29007570 - 29007502
Alignment:
Q  171 aaagcgtaatgcttgatattgcgataacttttatcacgaattcttcacaaccgtacaatacaagctacc 239  Q
    |||||||||||||| |||| |||| |||||||||||||||| ||||||||| | ||| |||||||||||    
T  29007570 aaagcgtaatgcttaatatcgcgacaacttttatcacgaatgcttcacaactgcacagtacaagctacc 29007502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 20550134 - 20550067
Alignment:
Q  84 tttggttgcttccatggttacctattccacacaataataacaagttcgagaaaatttcctaacaaaga 151  Q
    ||||||||  |||||||||||||||| |||||||||||   ||||||||||||  |||||||||||||    
T  20550134 tttggttgagtccatggttacctatttcacacaataattgtaagttcgagaaatattcctaacaaaga 20550067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 24187872 - 24187819
Alignment:
Q  84 tttggttgcttccatggttacctattccacacaataataacaagttcgagaaaa 137  Q
    |||||||| ||| ||||||||||||| |||||||||||  ||||||||||||||    
T  24187872 tttggttgattcaatggttacctatttcacacaataatttcaagttcgagaaaa 24187819  T

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Target: scaffold0427 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 4821 - 4736
Alignment:
Q  74 cttgtgcgtctttggttgcttccatggttacctattccacacaataataacaagttcgagaaaatttcctaacaaagataaggttg 159  Q
    ||||||| | |||||||| ||||||| | || |||| ||||| ||| |  ||||||||||||||||||||||||||  ||||||||    
T  4821 cttgtgcctttttggttgattccatgctaacatatttcacaccatagttgcaagttcgagaaaatttcctaacaaaattaaggttg 4736  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 23474 - 23511
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgcttc 57  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  23474 tgaagctactagtgttttccttcctcttaaaccgcttc 23511  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 29652727 - 29652690
Alignment:
Q  111 cacacaataataacaagttcgagaaaatttcctaacaa 148  Q
    |||||||||||  |||||||||||||||||||||||||    
T  29652727 cacacaataattgcaagttcgagaaaatttcctaacaa 29652690  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 26581070 - 26581111
Alignment:
Q  20 tgaagctcctagtgttttccttcctcttgaaccgcttcattc 61  Q
    |||||||||||||| || ||||||||||||||||||| ||||    
T  26581070 tgaagctcctagtgcttgccttcctcttgaaccgctttattc 26581111  T

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Target: scaffold0472 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 8705 - 8792
Alignment:
Q  275 attgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctc 363  Q
    |||||||||||||  |||||||||||| || || | || ||||| |||||||||   |||||| ||||||||||||| |||||| ||||    
T  8705 attgagcggtttagccacgttttattatagtaaaaatgcacttcatggaatttttgagaaaag-attgtcgctggatctagcagtgctc 8792  T

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