View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5494_high_10 (Length: 295)

Name: NF5494_high_10
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5494_high_10
NF5494_high_10
[»] chr8 (2 HSPs)
chr8 (34-127)||(43592248-43592341)
chr8 (229-279)||(43592430-43592480)
[»] chr1 (2 HSPs)
chr1 (34-131)||(52335584-52335677)
chr1 (247-279)||(52335704-52335736)
[»] scaffold0038 (2 HSPs)
scaffold0038 (232-279)||(115430-115477)
scaffold0038 (34-131)||(115565-115658)
[»] chr6 (2 HSPs)
chr6 (232-279)||(28324115-28324162)
chr6 (34-131)||(28324250-28324343)
[»] chr3 (2 HSPs)
chr3 (233-275)||(47863259-47863301)
chr3 (85-131)||(47863390-47863436)
[»] chr5 (1 HSPs)
chr5 (232-279)||(43448109-43448156)


Alignment Details
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 43592248 - 43592341
Alignment:
Q  34 ttaccctacaaataaacatgtagaagaatagtgtacaacnnnnnnnttaaggagataatattagtgaaatattaattagaatgaatctaattgt 127  Q
    ||||||||||||||||||| |||||||||||||||||||       ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  43592248 ttaccctacaaataaacatatagaagaatagtgtacaacaaaaaaattaaggagagaatgttagtgaaatattaattagaatgaatctaattgt 43592341  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 43592430 - 43592480
Alignment:
Q  229 gtacagcaaaatttcagtaaaaattattataaaattgtgtagcagaatatt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43592430 gtacagcaaaatttcagtaaaaattattataaaattgtgtagcagaatatt 43592480  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 52335584 - 52335677
Alignment:
Q  34 ttaccctacaaataaacatgtagaagaatagtgtacaacnnnnnnnttaaggagataatattagtgaaatattaattagaatgaatctaattgttagt 131  Q
    |||||||||||||||||||||||||||||||||||||||       |||   ||| |||||||||||||||||||||||||||||||||||| |||||    
T  52335584 ttaccctacaaataaacatgtagaagaatagtgtacaac-aaaaaatta---agagaatattagtgaaatattaattagaatgaatctaattattagt 52335677  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 52335704 - 52335736
Alignment:
Q  247 aaaaattattataaaattgtgtagcagaatatt 279  Q
    |||||||||||||||||||||||||||||||||    
T  52335704 aaaaattattataaaattgtgtagcagaatatt 52335736  T

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Target: scaffold0038 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 115477 - 115430
Alignment:
Q  232 cagcaaaatttcagtaaaaattattataaaattgtgtagcagaatatt 279  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  115477 cagcaaaattttagtaaaaattattataaaattgtgtagcagaatatt 115430  T

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Target: scaffold0038; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 115658 - 115565
Alignment:
Q  34 ttaccctacaaataaacatgtagaagaatagtgtacaacnnnnnnnttaaggagataatattagtgaaatattaattagaatgaatctaattgttagt 131  Q
    |||||| ||||||||||||||||||||||||||||||||       |    |||| |||||||||||||| ||||||||||||||||||||| |||||    
T  115658 ttaccccacaaataaacatgtagaagaatagtgtacaacaaaaaatt----gagagaatattagtgaaattttaattagaatgaatctaattattagt 115565  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 28324162 - 28324115
Alignment:
Q  232 cagcaaaatttcagtaaaaattattataaaattgtgtagcagaatatt 279  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28324162 cagcaaaattttagtaaaaattattataaaattgtgtagcagaatatt 28324115  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 28324343 - 28324250
Alignment:
Q  34 ttaccctacaaataaacatgtagaagaatagtgtacaacnnnnnnnttaaggagataatattagtgaaatattaattagaatgaatctaattgttagt 131  Q
    |||||| ||||||||||||||||||||||||||||||||       |    |||| |||||||||||||| ||||||||||||||||||||| |||||    
T  28324343 ttaccccacaaataaacatgtagaagaatagtgtacaacaaaaaatt----gagagaatattagtgaaattttaattagaatgaatctaattattagt 28324250  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 47863301 - 47863259
Alignment:
Q  233 agcaaaatttcagtaaaaattattataaaattgtgtagcagaa 275  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  47863301 agcaaaattttagtaaaaattattataaaattgtgtagcagaa 47863259  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 47863436 - 47863390
Alignment:
Q  85 gagataatattagtgaaatattaattagaatgaatctaattgttagt 131  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||    
T  47863436 gagagaatattagtgaaatattaattagaatgaatctaattattagt 47863390  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 43448156 - 43448109
Alignment:
Q  232 cagcaaaatttcagtaaaaattattataaaattgtgtagcagaatatt 279  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||||    
T  43448156 cagcaaaattttaataaaaattattataaaattgtgtggcagaatatt 43448109  T

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