View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5494_high_13 (Length: 259)

Name: NF5494_high_13
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5494_high_13
NF5494_high_13
[»] chr4 (3 HSPs)
chr4 (10-243)||(37565899-37566132)
chr4 (101-148)||(24393608-24393655)
chr4 (109-150)||(21027922-21027963)
[»] chr6 (1 HSPs)
chr6 (101-224)||(2725790-2725913)
[»] chr8 (6 HSPs)
chr8 (108-170)||(33581852-33581914)
chr8 (119-180)||(33102095-33102156)
chr8 (108-170)||(12750161-12750223)
chr8 (110-180)||(22842156-22842226)
chr8 (108-180)||(34363045-34363116)
chr8 (101-137)||(38006590-38006626)
[»] chr1 (5 HSPs)
chr1 (101-167)||(32827723-32827789)
chr1 (101-164)||(9873756-9873819)
chr1 (104-194)||(52186888-52186978)
chr1 (101-170)||(21322569-21322638)
chr1 (112-148)||(44973343-44973379)
[»] chr5 (1 HSPs)
chr5 (108-180)||(37442598-37442669)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 37566132 - 37565899
Alignment:
Q  10 aaaatcaacctagttggcccttcaataaattagtcaagctctgccactgattttgcatcaacgcctcactgacttgaaggcacaaattcacgagtaccgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  37566132 aaaatcaacctagttggcccttcaataaattagtcaagctctgccactgattttgcatcaatgcctcactgacttgaaggcacaaattcgcgagtaccgc 37566033  T
Q  110 tcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgctaatgtatttatcggcgggaatgaacgtaaacagatggc 209  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | ||||||||||||||||| ||||||| ||||||||||||    
T  37566032 tcttgttccatctgtttttcctcatttctatcaaaatagccgagcataaattaactcacacaaatgtatttatcggcggaaatgaacataaacagatggc 37565933  T
Q  210 agaagatcaattctctaaattcacctcaaagaag 243  Q
    |||||| |||||||||||||||||||||||||||    
T  37565932 agaagagcaattctctaaattcacctcaaagaag 37565899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 24393608 - 24393655
Alignment:
Q  101 gagtaccgctcttcttccatctgtttttcctcattcctatcaaaatag 148  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  24393608 gagtaccgctcttctcccatctgtttttgctcattcccatcaaaatag 24393655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 21027963 - 21027922
Alignment:
Q  109 ctcttcttccatctgtttttcctcattcctatcaaaatagcc 150  Q
    ||||||| |||||||||||| ||||||||| |||||||||||    
T  21027963 ctcttctcccatctgtttttgctcattcctgtcaaaatagcc 21027922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 224
Target Start/End: Complemental strand, 2725913 - 2725790
Alignment:
Q  101 gagtaccgctcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgctaatgtatttatcggcgggaatgaacgtaa 200  Q
    |||||| |||||||| |||||||||||| ||||||||  ||||||||||| ||| | ||||||||||||| | ||| ||| || |||||||||| |  ||    
T  2725913 gagtactgctcttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcacgcaagtgtgtttctcagcgggaatgagcaaaa 2725814  T
Q  201 acagatggcagaagatcaattctc 224  Q
    | |||||  |||||| ||||||||    
T  2725813 aaagatgtaagaagagcaattctc 2725790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 33581914 - 33581852
Alignment:
Q  108 gctcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgc 170  Q
    |||||||||||||||| |||| |||||||| | |||||||||||||| | |||||||||||||    
T  33581914 gctcttcttccatctgattttgctcattcccaacaaaatagcctagcgtgagttaactcacgc 33581852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 33102156 - 33102095
Alignment:
Q  119 atctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgctaatgtattt 180  Q
    |||||||||| ||||||||  ||||||||||| ||| | ||||||||||||| |||||||||    
T  33102156 atctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcacgcaaatgtattt 33102095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 12750161 - 12750223
Alignment:
Q  108 gctcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgc 170  Q
    |||||||| |||||||||||||||||| ||  || |||||||| ||| | |||||||||||||    
T  12750161 gctcttctcccatctgtttttcctcatccccgtccaaatagccgagcgtgagttaactcacgc 12750223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 22842156 - 22842226
Alignment:
Q  110 tcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgctaatgtattt 180  Q
    |||||| |||||||||||| ||||||||  ||||||||| | ||| | ||||||||||||  |||||||||    
T  22842156 tcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaactcacgtaaatgtattt 22842226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 34363116 - 34363045
Alignment:
Q  108 gctcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgctaatgtattt 180  Q
    ||||||| |||||||||||||  ||||| ||||| |||||||| ||| |||||||||| ||||  ||||||||    
T  34363116 gctcttcatccatctgtttttgttcatttctatc-aaatagccgagcttaagttaacttacgcagatgtattt 34363045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 38006626 - 38006590
Alignment:
Q  101 gagtaccgctcttcttccatctgtttttcctcattcc 137  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  38006626 gagtaccgctcttctcccatctgtttttgctcattcc 38006590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 32827723 - 32827789
Alignment:
Q  101 gagtaccgctcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactca 167  Q
    |||||| |||||||| |||||||||||| ||||||||| ||||||||||| ||  || |||||||||    
T  32827723 gagtactgctcttctcccatctgtttttgctcattcctgtcaaaatagccgagtgtaggttaactca 32827789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 9873819 - 9873756
Alignment:
Q  101 gagtaccgctcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaac 164  Q
    ||||||||||||||| |||||||||||| || |||||  ||||||||||| | | |||||||||    
T  9873819 gagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtaagttaac 9873756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 52186978 - 52186888
Alignment:
Q  104 taccgctcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgctaatgtatttatcggcgggaatga 194  Q
    |||||||||| | | |||||||||| |||| | | |||||||||||| ||| | |||||||||||||   |||||||||| | ||||||||    
T  52186978 taccgctcttttcctatctgtttttgctcacttccatcaaaatagccgagcgtgagttaactcacgcaggtgtatttatcagtgggaatga 52186888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 21322638 - 21322569
Alignment:
Q  101 gagtaccgctcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgc 170  Q
    |||||| |||||||| |||||||||||| |||| |||  ||||||||||| ||  | |||||||||||||    
T  21322638 gagtactgctcttctcccatctgtttttgctcaatcccgtcaaaatagccgagggtgagttaactcacgc 21322569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 44973343 - 44973379
Alignment:
Q  112 ttcttccatctgtttttcctcattcctatcaaaatag 148  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  44973343 ttcttccatctgtttttactcattccgatcaaaatag 44973379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 37442669 - 37442598
Alignment:
Q  108 gctcttcttccatctgtttttcctcattcctatcaaaatagcctagcataagttaactcacgctaatgtattt 180  Q
    ||||||||||||||||||||| ||||||||  || |||||||| ||| | |||||||||| ||  ||||||||    
T  37442669 gctcttcttccatctgtttttgctcattcccgtc-aaatagccgagcgtgagttaactcatgcagatgtattt 37442598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University