View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5494_high_5 (Length: 332)
Name: NF5494_high_5
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494_high_5 |
 | |
|
| [»] chr7 (10 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 46494489 - 46494803
Alignment:
| Q |
18 |
gaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46494489 |
gaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcacc |
46494588 |
T |
|
| Q |
118 |
aaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacgaagatcgggagccacagcccggtaaccgagagagcct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46494589 |
aaccaagtggaagattgtataactgtttaccgaactggggacatcagtatcgccataaccacgaagatcgggagccacagcccggtaaccgagagagccg |
46494688 |
T |
|
| Q |
218 |
tgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttctttacctttttcagcaatatgcattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46494689 |
agagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttcttttcctttttcagcaatatgcattt |
46494788 |
T |
|
| Q |
318 |
tgattccattcactt |
332 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
46494789 |
tgattccattcactt |
46494803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 46490191 - 46490505
Alignment:
| Q |
18 |
gaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcacc |
117 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||| ||||| || ||| | ||||| ||||| ||||||||||| ||||| |||||||| |
|
|
| T |
46490191 |
gaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaacgccaagtgagtcgatgagagcaacgatgtcacc |
46490290 |
T |
|
| Q |
118 |
aaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacgaagatcgggagccacagcccggtaaccgagagagcct |
217 |
Q |
| |
|
|||||| ||||||||||| || || | | || || |||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| |
|
|
| T |
46490291 |
aaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagcaacagcgcggtaaccgagggagcca |
46490390 |
T |
|
| Q |
218 |
tgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttctttacctttttcagcaatatgcattt |
317 |
Q |
| |
|
|||| | ||||||||||||||| || ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
46490391 |
agagcagaaatctggtggcgccatgaataccagagttcagggaagccatgaaggaacaggacaacgggtccttctttacctttctcagcaatatgcattt |
46490490 |
T |
|
| Q |
318 |
tgattccattcactt |
332 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
46490491 |
tgatgccattcactt |
46490505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 46520419 - 46520733
Alignment:
| Q |
18 |
gaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcacc |
117 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| || || ||||||||||| ||||| || ||||| |
|
|
| T |
46520419 |
gaaacatgcaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtgagtcgatgagagcaacgatatcacc |
46520518 |
T |
|
| Q |
118 |
aaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacgaagatcgggagccacagcccggtaaccgagagagcct |
217 |
Q |
| |
|
||||||||||||||||| || ||| ||| ||| ||| |||| |||||||| || ||||||||||| ||||| ||||| ||||||||||| ||||| |
|
|
| T |
46520519 |
caccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagcca |
46520618 |
T |
|
| Q |
218 |
tgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttctttacctttttcagcaatatgcattt |
317 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||| || |||||||| ||||| || ||||||||||||| |
|
|
| T |
46520619 |
agagcagcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattt |
46520718 |
T |
|
| Q |
318 |
tgattccattcactt |
332 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
46520719 |
tgatgccattcactt |
46520733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 46478997 - 46479303
Alignment:
| Q |
26 |
caaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagt |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| || || ||||||||||| ||||| || ||||| ||||||| |
|
|
| T |
46478997 |
caaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaacgccgagtgagtcgatgagagcaacgatatcacccaccaagt |
46479096 |
T |
|
| Q |
126 |
ggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacgaagatcgggagccacagcccggtaaccgagagagccttgagccgc |
225 |
Q |
| |
|
|||||||||| || ||| ||| ||| ||| |||| |||||||| || ||||||||||| ||||| ||||| ||||||||||| ||||| |||| || |
|
|
| T |
46479097 |
ggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagcagc |
46479196 |
T |
|
| Q |
226 |
aatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttctttacctttttcagcaatatgcattttgattcca |
325 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||| || |||||||| ||||| || ||||||||||||||||| ||| |
|
|
| T |
46479197 |
aatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgcca |
46479296 |
T |
|
| Q |
326 |
ttcactt |
332 |
Q |
| |
|
||||||| |
|
|
| T |
46479297 |
ttcactt |
46479303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 26 - 332
Target Start/End: Complemental strand, 46326771 - 46326465
Alignment:
| Q |
26 |
caaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagt |
125 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| | |||||||| ||||| || || |||||| |||||||||| | ||||||||||||||| | || |
|
|
| T |
46326771 |
caaagataccaaccaatgatggcacccatatcatgaccaacaaggaaaacttgttccacaccaagcaagtcgatgagagaaacaatgtcaccaactacgt |
46326672 |
T |
|
| Q |
126 |
ggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacgaagatcgggagccacagcccggtaaccgagagagccttgagccgc |
225 |
Q |
| |
|
| || ||| || ||| | | ||| || ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||||| || || ||||||| |
|
|
| T |
46326671 |
gaaaacatgtgtagctgctaatggaagacggaacatctgtgtcaccatagccacggagatcgggagcaacagcacggtaaccgagggatccgagagccgc |
46326572 |
T |
|
| Q |
226 |
aatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttctttacctttttcagcaatatgcattttgattcca |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46326571 |
aatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattcca |
46326472 |
T |
|
| Q |
326 |
ttcactt |
332 |
Q |
| |
|
||||||| |
|
|
| T |
46326471 |
ttcactt |
46326465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 46323074 - 46322760
Alignment:
| Q |
18 |
gaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcacc |
117 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||||||||||||| ||||| || ||||||||||| |||||| | || || || ||||| | ||||| |
|
|
| T |
46323074 |
gaaacatgcaaaggtaccaaccaatgatggcaccccaatcatgagctacaagaaacacttgatcaacgccaagcaaatctataagtgcaaccagatcacc |
46322975 |
T |
|
| Q |
118 |
aaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacgaagatcgggagccacagcccggtaaccgagagagcct |
217 |
Q |
| |
|
|| | ||| || ||| || ||| ||| ||| || | |||||||| ||||| ||||| ||||| ||||| || || ||||| ||||||||||| |
|
|
| T |
46322974 |
tacaatgtgaaaacctgtgtagctgcttattgaagatggagcctcagtgtcaccatagccacgtagatccggagctacggcgcggtagccgagagagccg |
46322875 |
T |
|
| Q |
218 |
tgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttctttacctttttcagcaatatgcattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46322874 |
agagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattt |
46322775 |
T |
|
| Q |
318 |
tgattccattcactt |
332 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
46322774 |
tgattccattcactt |
46322760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 330
Target Start/End: Original strand, 46532046 - 46532350
Alignment:
| Q |
26 |
caaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagt |
125 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| || ||||| ||||| |||||| | || || || ||||||| |||||| || | || |
|
|
| T |
46532046 |
caaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaacaccaagcaaatctataagtgcaacaaggtcacctacaatgt |
46532145 |
T |
|
| Q |
126 |
ggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacgaagatcgggagccacagcccggtaaccgagagagccttgagccgc |
225 |
Q |
| |
|
| || || || ||| ||| ||| || | || ||||| ||||| ||||| ||||| ||||| || || ||||||||||| ||||| |||| | |
|
|
| T |
46532146 |
gaaaaccagtgtagctgcttattgaagatggagcctcggtgtcaccatagccacgcagatctggagcaacggcgcggtaaccgagggagccaagagctac |
46532245 |
T |
|
| Q |
226 |
aatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttctttacctttttcagcaatatgcattttgattcca |
325 |
Q |
| |
|
||| ||||||||||| || ||||||||||| ||||| || |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46532246 |
aatttggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttcttttcctttttcagcaatatgcattttgattcca |
46532345 |
T |
|
| Q |
326 |
ttcac |
330 |
Q |
| |
|
||||| |
|
|
| T |
46532346 |
ttcac |
46532350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 46524493 - 46524799
Alignment:
| Q |
26 |
caaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagt |
125 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| ||||| || ||||||||||| || || | || || || ||||||| ||||| || | || |
|
|
| T |
46524493 |
caaagataccaaccaatgatagcaccccaatcatgagcaacaagaaacacttgatcaacacccagaaaatctataagtgcaacaagatcacctactatgt |
46524592 |
T |
|
| Q |
126 |
ggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacgaagatcgggagccacagcccggtaaccgagagagccttgagccgc |
225 |
Q |
| |
|
| || ||| || || | || ||| || |||| ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| |||| |||| | |
|
|
| T |
46524593 |
gaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagctgagagctac |
46524692 |
T |
|
| Q |
226 |
aatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttctttacctttttcagcaatatgcattttgattcca |
325 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46524693 |
aatctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttctttacctttctcagcaatatgcattttgattcca |
46524792 |
T |
|
| Q |
326 |
ttcactt |
332 |
Q |
| |
|
||||||| |
|
|
| T |
46524793 |
ttcactt |
46524799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 46516778 - 46517092
Alignment:
| Q |
18 |
gaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcacc |
117 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||| || || || || ||||| || || ||||| || ||||| |
|
|
| T |
46516778 |
gaaacaaacaaagataccaaccaatgatagcaccccaatcatgagccacaaggaaaacttggtccacacccagtgagtcaattagagcaacgatatcacc |
46516877 |
T |
|
| Q |
118 |
aaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacgaagatcgggagccacagcccggtaaccgagagagcct |
217 |
Q |
| |
|
|||||| || || ||||| || || | || ||| |||| |||||||||| || || |||| ||||| |||||||| | ||||| || || |||| |
|
|
| T |
46516878 |
aaccaaatgtaaaattgtgtagctactaactgaagtgggagcatcagtgtcaccgtagccacagagatctggagccacggtgcggtagccaagggagctg |
46516977 |
T |
|
| Q |
218 |
tgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttctttacctttttcagcaatatgcattt |
317 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||||| || || |||||||||| || | ||||||||||| ||||| || || | |||||||| |
|
|
| T |
46516978 |
agagcaacaatctggtggcgccatgagtaccagatttcaggaaaaccatgaaggaacaatactattggtccttcttttcctttctctgcgacatgcattt |
46517077 |
T |
|
| Q |
318 |
tgattccattcactt |
332 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
46517078 |
tgattccattcactt |
46517092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 46464873 - 46464979
Alignment:
| Q |
29 |
agataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtgga |
128 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
46464873 |
agataccaaccagttaaggcaccccaatcatgagcaacaaaaaagacttgatcaaccccaagtgagtctatgagagcaacgatgtcaccaactaagtgga |
46464972 |
T |
|
| Q |
129 |
agattgt |
135 |
Q |
| |
|
||||||| |
|
|
| T |
46464973 |
agattgt |
46464979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 7475526 - 7475429
Alignment:
| Q |
25 |
gcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaacca |
122 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||| | || || || ||||||| ||||||||||| |
|
|
| T |
7475526 |
gcaaaggtaccaaccaatgatggcaccccaatcatgagccacaagaaacacttgatcaacaccaagaaaatctataagtgcaacaaggtcaccaacca |
7475429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University