View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5494_low_11 (Length: 287)
Name: NF5494_low_11
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494_low_11 |
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| [»] scaffold0154 (2 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 14587 - 14848
Alignment:
| Q |
9 |
gataattcttcgggtatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttc |
108 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14587 |
gataattcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttc |
14686 |
T |
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| Q |
109 |
cagttaccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggtgacataaaaagtggggt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
14687 |
cagttaccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggcgacataaaaagcggggt |
14786 |
T |
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| Q |
209 |
tcctctgcattcgaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattt |
270 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14787 |
tcctctgcattcaaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattt |
14848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 24007 - 24268
Alignment:
| Q |
9 |
gataattcttcgggtatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttc |
108 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24007 |
gataattcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttc |
24106 |
T |
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| Q |
109 |
cagttaccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggtgacataaaaagtggggt |
208 |
Q |
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| T |
24107 |
cagttaccatctccaccactgcacacccaagtgcccaaatatccgccggagattcatgctcgccattgtttactgattccggcgacataaaaagcggggt |
24206 |
T |
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| Q |
209 |
tcctctgcattcgaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattt |
270 |
Q |
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| T |
24207 |
tcctctgcattcaaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattt |
24268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 746 - 488
Alignment:
| Q |
12 |
aattcttcgggtatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccag |
111 |
Q |
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|||||||||||||||| ||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
746 |
aattcttcgggtatcaccggcgattcttctccggtaccaatccgaagcaacaatgaccacatatttgaatctttctccaaattccatgctggttttccag |
647 |
T |
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| Q |
112 |
ttaccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggtgacataaaaagtggggttcc |
211 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || | ||||||||||||||| |||||||||||||| ||||| |
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| T |
646 |
ttaccatctccaccaccgcacacccaagtgcccatatatccgccggagattcatgctcaccgtggtttactgattccggcgacataaaaagtggagttcc |
547 |
T |
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| Q |
212 |
tctgcattcgaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattt |
270 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
546 |
cctgcatttcaaactctgttttccccctgttttcttggcaagaccaaaatcagcaattt |
488 |
T |
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