View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5494_low_16 (Length: 251)
Name: NF5494_low_16
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 25251768 - 25251545
Alignment:
| Q |
17 |
actttctcgttcctcacttgtttaaatttgtcctgaacagggaactgacgcattctctcagtctggattatattcaaaccatcaagatatagcccctaga |
116 |
Q |
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| T |
25251768 |
actttctcgttcctcacttgtttaaatttgtcctgaacagggaactgacgcattctctcagtctggattatattcaaaccatcaagatatagcccctaga |
25251669 |
T |
|
| Q |
117 |
tattctgtaagtggattcattgtacctggaattttcagtaccgttgaattttataattctaaattcagaataagaatgcaaaaacagacaaattgtttat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25251668 |
tattctgtaagtggattcattgtacctggaattttcagtaccgttgaattttataattctaaattcagaataagaatgcaaaaacagacaaattgtttat |
25251569 |
T |
|
| Q |
217 |
aagatttctatattcatttcctat |
240 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
25251568 |
aagatttctatattcatttgctat |
25251545 |
T |
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