View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5494_low_17 (Length: 217)
Name: NF5494_low_17
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 404971 - 404787
Alignment:
| Q |
20 |
atccagtttcataactatctttgtttaattactatcatacagtagaattatacattctaatc-----atacaatccaacaatttgagtcattgagaatgc |
114 |
Q |
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| T |
404971 |
atccagtttcataactatctttgtttaattactatcatacagtagaattatacattctaatcgtgtgatacaatccaacaa-ttgagtcattaagaatgc |
404873 |
T |
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| Q |
115 |
atctgacatttctttttgtattttactctgtaatttgacattgt----tttcttagagtatgaattttttgatatttccatgtggc |
196 |
Q |
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| T |
404872 |
atctaacatttctttttgtattttactctgtaatttgacattgttttctttcttagagtatgaattttttgatatttccatgtggc |
404787 |
T |
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