View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5494_low_6 (Length: 320)
Name: NF5494_low_6
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 4371054 - 4371318
Alignment:
| Q |
19 |
attctgtgttccatgttccttcccttttgaaaaatccagtatcttcagggtattgattgtattgacctgagtcatggggtccacttgttccccactcttt |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4371054 |
attctgtgttccatgttccttctcttttgaaaaatccagtatcctcaggaaattgattgtattgtcctgagtcatggggtccacctgttccccactcttt |
4371153 |
T |
|
| Q |
119 |
cttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttggttagtagctagatattttgtgagagatatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4371154 |
cttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttggttagtagctagatattttgtgagagatatt |
4371253 |
T |
|
| Q |
219 |
ttgtatgtaacatgtctaacattaatatgattttggactattttgaaaaattgttcaaaactgat |
283 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4371254 |
ttgtatgtaacatgtctaacgttaatatgattttggactattttgaaaaattgttcaaaaatgat |
4371318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 4363251 - 4363402
Alignment:
| Q |
19 |
attctgtgttccatgttccttcccttttgaaaaatccagtatcttcagggtattgattgtattgacctgagtcatggggtccacttgttccccactcttt |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4363251 |
attctgtgttccatgttccttctcttttgaaaaatccagtatcctcaggaaattgattgtattgtcctgagtcatggggtccacttgttccccactcttt |
4363350 |
T |
|
| Q |
119 |
cttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttg |
170 |
Q |
| |
|
|||||||||||| | |||| ||||||||| || |||||||||||||||||| |
|
|
| T |
4363351 |
cttcccaattgctcctgctgttgcttccaaggatgatctcatatactgtttg |
4363402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 931469 - 931355
Alignment:
| Q |
95 |
gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttgg----tt |
190 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
931469 |
gggtccacttgttccccactctttctttccaattgccgcagctgatgcttcca---aagatctcatatactgtttgaaaaatgagttattttggttaatt |
931373 |
T |
|
| Q |
191 |
agtagctagatattttgt |
208 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
931372 |
agtagctagatattttgt |
931355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 10607825 - 10607936
Alignment:
| Q |
98 |
tccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttggtta----gt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
10607825 |
tccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaaga---tctcatatactgtttgaaaaatgagttattttggttaattagt |
10607921 |
T |
|
| Q |
194 |
agctagatattttgt |
208 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
10607922 |
agctagatgttttgt |
10607936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 12589706 - 12589820
Alignment:
| Q |
95 |
gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttgg----tt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
12589706 |
gggtccacttgttccccactctttcttcccaattgccgcaactgatgcttcca---aagatctcatatactgtttgaaaaatgagttattttggttaatt |
12589802 |
T |
|
| Q |
191 |
agtagctagatattttgt |
208 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12589803 |
agtagctagatattttgt |
12589820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 46764797 - 46764683
Alignment:
| Q |
95 |
gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttgg----tt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
46764797 |
gggtccacttgttccccactctttcttcccaattgccgcaactgatgcttcca---aagatctcatatactgtttgaaaaatgagttattttggttaatt |
46764701 |
T |
|
| Q |
191 |
agtagctagatattttgt |
208 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46764700 |
agtagctagatattttgt |
46764683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 25655142 - 25655235
Alignment:
| Q |
95 |
gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttggtta |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25655142 |
gggtccacttgttccccactctttcttcccaattgccgcaactgatgcttcca---aagatctcatatactgtttgaaaaatgagttattttggtta |
25655235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 11680889 - 11680776
Alignment:
| Q |
95 |
gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttgg----tt |
190 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
11680889 |
gggtctacttgttccccactctttcttcccaattgccgcagctgatgcttcca---aagatctcatatactg-ttgaaaaatgagttattttggttaatt |
11680794 |
T |
|
| Q |
191 |
agtagctagatattttgt |
208 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11680793 |
agtagctagatattttgt |
11680776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 11689168 - 11689055
Alignment:
| Q |
95 |
gggtccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttgg----tt |
190 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
11689168 |
gggtctacttgttccccactctttcttcccaattgccgcagctgatgcttcca---aagatctcatatactg-ttgaaaaatgagttattttggttaatt |
11689073 |
T |
|
| Q |
191 |
agtagctagatattttgt |
208 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11689072 |
agtagctagatattttgt |
11689055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University