View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5494_low_7 (Length: 312)
Name: NF5494_low_7
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 36543882 - 36543599
Alignment:
| Q |
20 |
agagtatgcttatcatcaatatgtttgccttctaaaatcttccactcttagcctttctttcaacatgacatgataaacatatcacttacatggataaacc |
119 |
Q |
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| T |
36543882 |
agagtatgcttatcatcaatatgtttgccttctaaaatcttccactcttagcctttctttcaacatgacaagataaacatatcacttacatggataaacc |
36543783 |
T |
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| Q |
120 |
aattagagataatacatgatacaatattcacaatcatgtgaaaaaagacatctagacgtacttgaggaaaattagtgaaaaaacacatttaattcaaaca |
219 |
Q |
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| T |
36543782 |
aattagagataatacatgatacaatattcacaatcatgtgaaataagacatatagacgtacttgaggaaaattagtgaaaaaacacatgaaattcaaaca |
36543683 |
T |
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| Q |
220 |
attagaaatcaggttagaatatttaatctttctacttaattggtttcaaagacatagtcatgttttaataaagacaagtattat |
303 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36543682 |
attagaaatcaggttaaaatatttaatctttctatttaattggtttcaaagacatagtcatgttttaataaagacaagtattat |
36543599 |
T |
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