View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5494_low_9 (Length: 302)
Name: NF5494_low_9
Description: NF5494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5494_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 30173170 - 30173321
Alignment:
| Q |
1 |
cattgttattgaaaccacaggtttgtatgttgctctcgttgttcaaatatttacttgcaagttgaaactaaccgaccaaattgtgaagttactaatattt |
100 |
Q |
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| T |
30173170 |
cattgttattgaaaccacaggtttgtatgttgctctcgttgttcaaatatttacttgcaagttgaaactaaccgaccaaattgtgaagttactaatattt |
30173269 |
T |
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| Q |
101 |
tgctgtgccactctgaaattcattttgtttgggatttcgataacaggtcaac |
152 |
Q |
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| T |
30173270 |
tgctgtgccactctgaaattcattttgtttgggatttcgataacaggtcaac |
30173321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 30173392 - 30173488
Alignment:
| Q |
206 |
ttcattattgaccttatctaattctaaatggttcaattttatttttgatcatgtgttgcttaaaaatctttttagggtgtccct--atggttctgca |
300 |
Q |
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| T |
30173392 |
ttcattattgaccttatctaattctaaatggttcaattttatttttgatcatgtgttgcttaaaaatctttttagggtgtcccttcatggttctgca |
30173488 |
T |
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