View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5495-Insertion-3 (Length: 663)
Name: NF5495-Insertion-3
Description: NF5495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5495-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Original strand, 25583200 - 25583863
Alignment:
| Q |
8 |
ctatttactctccactcttatatctatctgattttcttgctataacaagattttgtgattattttcccctcactagtagatgtaggaaaggcaaaaagtg |
107 |
Q |
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| T |
25583200 |
ctatttactctccactcttatatctatctgattttcttgctataacaagattttgtgattattttcccctcactagtagatgtaggaaaggcaaaaagtg |
25583299 |
T |
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| Q |
108 |
gagtgcaagtagcactattcatagaataagacacataaacaaggattaaaactaataatagaaatgaaacatattgaaatggagattcctaggttaaaag |
207 |
Q |
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| T |
25583300 |
gagtgcaagtagcactattcatagaataagacacataaacaaggattaaaactaataatagaaatgaaacatattgaaatggagattcctaggttaaaag |
25583399 |
T |
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| Q |
208 |
ctaacatgtcctac--------taccaacagagaatgcagaactggcaacagggtaacctacacttaatgcatgtttggattgactgtgagttttttatt |
299 |
Q |
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| T |
25583400 |
ctaacatgtcctactaggctactaccaacatagaatgcagaactggcaacagggtaacctacacttaatgcatgtttggattgactgtgagttttttatt |
25583499 |
T |
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| Q |
300 |
accgtaattttggcaaaaacttcattttgaagcttcaaccaaacgacggcgctactgtgatttcgttaaactcactgtaattccaaacatgcagttaatt |
399 |
Q |
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| T |
25583500 |
accgtaattttggcaaaaactacattttgaagcttcaaccaaacgacggcgctactgtgatttcgttaaactcactgtaattccaaacatgcagttaatt |
25583599 |
T |
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| Q |
400 |
cctccttttggagttgttgttttcatgatggaaatcaagtaaaacagtgcttttgcatttagggcactttggatcatcttcagaaagcatgacatacata |
499 |
Q |
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| T |
25583600 |
cctccttttggagttgttgttttcatgatggaaatcaagtaaaacagtgcttttacatttagggcactttggatcatcttcagaaagcatgacatacata |
25583699 |
T |
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| Q |
500 |
agacaacgaggacaaccaaccaaaaccatggaagtggcttctgggctgttagagtatctctgttggttgtttccatcttcttggtttagctcagtggaca |
599 |
Q |
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| T |
25583700 |
agacaacgaggacaaccaaccaaaaccatggaagtggcttctgggctgttagagtatctctgttggttgtttccatcttcttggtttagctcagtggaca |
25583799 |
T |
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| Q |
600 |
cacatgaacttggtggggatgtaggtgacactgttgctgatcttgttggtgatgactcaactct |
663 |
Q |
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| T |
25583800 |
cacatgaacttggtggggatgtaggtgacactgttgctgatcttgttggtgatgactcaactct |
25583863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 547
Target Start/End: Complemental strand, 42894191 - 42894075
Alignment:
| Q |
431 |
aaatcaagtaaaacagtgcttttgcatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatgg |
530 |
Q |
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| T |
42894191 |
aaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatgg |
42894092 |
T |
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| Q |
531 |
aagtggcttctgggctg |
547 |
Q |
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| T |
42894091 |
aggttgcttcagggctg |
42894075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 41696776 - 41696812
Alignment:
| Q |
356 |
gtgatttcgttaaactcactgtaattccaaacatgca |
392 |
Q |
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| T |
41696776 |
gtgatttcgttaaactcactgtcattccaaacatgca |
41696812 |
T |
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