View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5495_high_2 (Length: 204)
Name: NF5495_high_2
Description: NF5495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5495_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 30733879 - 30734036
Alignment:
| Q |
32 |
aaaagttaaaataatgattaagtgatcaaaacacaccttcatgctttgcttaattttgaaacaaacagaattggttcttcgtatttgtcctctaacttgg |
131 |
Q |
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| T |
30733879 |
aaaagttaaaagaatgattaagtgatcataacacaccttcatgctt-gcttaattttgaaagaaacagaagtggctcttcgtacttgtcctctgctttgg |
30733977 |
T |
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| Q |
132 |
aactgagcatgtagtacatagtatttgttatgatatatatggacattggtgtcgataat |
190 |
Q |
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| T |
30733978 |
aactgagcttgtagtacatagtatttgttataatatatatgtacattggtgtcgataat |
30734036 |
T |
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Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 30715465 - 30715563
Alignment:
| Q |
25 |
aaaaataaaaagttaaaataatgattaagtgatcaaaacacaccttcatgctttgcttaattttgaaacaaacagaattggttcttcgtatttgtcctct |
124 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||| |||| |
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| T |
30715465 |
aaaaagaaaaagttaaaataatgattaagtgatcaaaacacaccttcatg-attgcttgagtttgaaacaaacagaagtggttcttcgtatttgttctct |
30715563 |
T |
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