View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5495_low_1 (Length: 309)
Name: NF5495_low_1
Description: NF5495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5495_low_1 |
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| [»] scaffold0542 (1 HSPs) |
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Alignment Details
Target: scaffold0542 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6784 - 7020
Alignment:
| Q |
1 |
cataatactagttcaaccaatataggtaagtaaagtcacaaccacaatttgaactcgagctttctcgaataatatatctttagctatatttgattaacca |
100 |
Q |
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| T |
6784 |
cataatactagttcaaccaatataggtaagtaaagtcacaaccacgattcgaactcgagctctttcggataatatttctttagctatatttcattaatca |
6883 |
T |
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| Q |
101 |
cttaagtcaaatcacttagaaattaattactatagtgattaatttgcataactaaatatattaacatcctcaaacttcattaaacaggaaccaacaaaca |
200 |
Q |
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| T |
6884 |
cctaagtcaaatcacttaaaaattaattactatagtgattaatttgcataactaaatatattaacatcctcaaacttcattaaacaagaaccaacaaaca |
6983 |
T |
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| Q |
201 |
tggttagtagcaaagtaagtcgccatcccttcattat |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6984 |
tggttagtagcaaagtaagtcgccatcccttcattat |
7020 |
T |
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