View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5497-Insertion-2 (Length: 818)
Name: NF5497-Insertion-2
Description: NF5497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5497-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 8 - 818
Target Start/End: Complemental strand, 54985308 - 54984499
Alignment:
| Q |
8 |
aattttgtggtgcttcagaagcaacctccctgataaatttaacataaaagatttttcaaaagaaaataacataacattcataaaaagcaagatagtgagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985308 |
aattttgtggtgcttcagaagcaacctccctgataaatttaacataaaagatttttcaaaagaaaataacataacattcataaaaagcaagatagtgagt |
54985209 |
T |
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| Q |
108 |
aatgttagttaagtagctgagcacatttaatgatcccattagaatggcttgaatgcaatatttgtgcagttagccaccagacctacaaaagtgagatttc |
207 |
Q |
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| T |
54985208 |
aatgttagttaagtagctgagcacatttaatgatctcattagaatggcttgaatgcaatatttgtgcagttagacaccagacctacaaaagtgagatttc |
54985109 |
T |
|
| Q |
208 |
caattcacatctccgttaatgctaaggctccgaattcctattcttttcaggatgtcctcttttgatttccannnnnnnctaacaaaatcatattagaatt |
307 |
Q |
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| T |
54985108 |
caattcacatctcctttaatgctaaggctccgaattcctattcttttcaggatgtcctcttttgatttccatttttttctaacaaaatcatattagaatt |
54985009 |
T |
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| Q |
308 |
tagaaccatggcatgggtttggaatttagtcaaataaatcatgagttacatggaacctaagataagcttaggatgttatgttaaaaaaccaagtaaccaa |
407 |
Q |
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| T |
54985008 |
tagaaccatggcatgggtttggaatttagtcaaataaatcatgagttacatggaacctaagataagcttaggatgttatgttaaaaaaccaagtaaccaa |
54984909 |
T |
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| Q |
408 |
cgcaaacattatgtgaaactctaatcccgattatcacaataaactagtcatatttatcaacnnnnnnnnngtgtcctataccactcaattttgtggctta |
507 |
Q |
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| T |
54984908 |
cgcaaacattatgtgaaactctaatcccgattatcacaataaactagtcatatttatcaacaaaaaaaaagtgtcctataccactcaattttgtggctta |
54984809 |
T |
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| Q |
508 |
ttaagaagcaaggtgcctgaaaaattaccaagattcaacaatatctatcctcggtgagaaaatcatagaaagatacagcacatccattttgtggtgtact |
607 |
Q |
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| T |
54984808 |
ttaagaagcaaggtgcctgaaaaattaccaagattcaacaatatctatcctcggcgagaaaattatagaaagatacagcacttccattttgtggtgtact |
54984709 |
T |
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| Q |
608 |
tcagaagccacaacacacattttatttggttttcattctcttacatttcacaatttgnnnnnnncaacaataaatttattaatgatcaaatctttgcaca |
707 |
Q |
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| T |
54984708 |
tcagaagccacaacacacattttatttggttttcattctcttacatttcacaatttgttttttt-aacaataaatttattaatgatcaaatctttgcata |
54984610 |
T |
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| Q |
708 |
caacgaactaaaactggaaagacaaaaagtacataacaacttgcaccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaat |
807 |
Q |
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| T |
54984609 |
cgacgaactaaaactggaaagataaaaagtacataacaacttgcgccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaat |
54984510 |
T |
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| Q |
808 |
aaaaacacgac |
818 |
Q |
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| T |
54984509 |
aaaaacacgac |
54984499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Original strand, 31320213 - 31320256
Alignment:
| Q |
616 |
cacaacacacattttatttggttttcattctcttacatttcaca |
659 |
Q |
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| T |
31320213 |
cacaacacacattttatttcgttttcattctctttcatctcaca |
31320256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 649
Target Start/End: Original strand, 31326250 - 31326283
Alignment:
| Q |
616 |
cacaacacacattttatttggttttcattctctt |
649 |
Q |
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| T |
31326250 |
cacaacacacattttatttcgttttcattctctt |
31326283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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