View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5497-Insertion-3 (Length: 598)
Name: NF5497-Insertion-3
Description: NF5497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5497-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 7 - 598
Target Start/End: Original strand, 15681771 - 15682354
Alignment:
| Q |
7 |
aataacatattacattatgctgcagaattagcacccccttctcagcttaacctaatttcaggagcagctcttcaaatgacacatgaaatactatggtttg |
106 |
Q |
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| T |
15681771 |
aataacatattacattatgctgcaaaattagcacctccttctcagcttaacttaatttcaggtgcagctcttcaaatgacacatgaaatactatggtttg |
15681870 |
T |
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| Q |
107 |
aggtacgtctactactactatttcacttaacatatgtcatataatatcctatgaataactaatatagaaaagaacaaaagactcgatactaacgccgaca |
206 |
Q |
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| T |
15681871 |
aggtacatctactactactatttcacttaacatatgtcatataatatcctatgaataactaatatagaaaagaacaaaagactcgatactaacaccgaca |
15681970 |
T |
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| Q |
207 |
ctggctagtgactcgtagatattagtatacaaataatttaagagaatatgatcaattggatgtaattatatgtgacaatgtcagatgctaacatttatta |
306 |
Q |
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| T |
15681971 |
ctggctaatgactcgtagacattagtatacaaataatttaagagaatatgatcaattggatgtaattacatgtgacgatgtcagatgctaacttttatta |
15682070 |
T |
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| Q |
307 |
gacatcatgcatgtcttttgtgaaagccttagccttaattgggccgatccaagggtcaaatatccaaagctagggtcttaagcttcaaacttttagacat |
406 |
Q |
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| T |
15682071 |
gacatcatacatgtcttacgtgaaagcctta-----attggggccgacccaagggtcaaatatccaaagctagggtcttaagcttcaaatttttagacat |
15682165 |
T |
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| Q |
407 |
gcatggtctaaaaattattcaattttgctataaatatatcatatgatagatcaattatatatttattcgcccaactcaattaattactannnnnnnnctt |
506 |
Q |
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| T |
15682166 |
gcatggtctaaaaattattcaattttgctataaatatatcatatgatagatcaattatatatttattcgcccaactcagtttattactatttttt---tt |
15682262 |
T |
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| Q |
507 |
ctgttaagtagcctagtgggtgagactcatataatttaaatgtggaaaagtgatgagttcgatgttcgaaaaccagcccctgcatgttattg |
598 |
Q |
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| T |
15682263 |
ctgttaagtagtttagcggatgagactcccataatttaaatgtggaaaagtgatgagttcgatgttcgaaaaccagcccctgcatgttattg |
15682354 |
T |
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