View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5497-Insertion-4 (Length: 517)
Name: NF5497-Insertion-4
Description: NF5497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5497-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Complemental strand, 11939459 - 11939009
Alignment:
| Q |
8 |
ggtgaatttctccaggcgcggtttgctcatttcgcagggaaatccatgagccgctgaagccgaggcttgtggccagctgtgttatggctgcatgaacaaa |
107 |
Q |
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| T |
11939459 |
ggtgaatttctccaggcgcggtgtgctcatttcgcagggaaatccatgagctgctgaagccgaggcttgtggccagctctgttatggctgcatgaacaaa |
11939360 |
T |
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| Q |
108 |
actttaataattcagtagtgctatatggtgcgaagacttctgtaattgaacaagacttcagtaattttgtcataatgagcttggcattgtagttttgaac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11939359 |
actttaataattcagtagtgctatatggtgcgaagacttcagtaattgaacaagacttcagtaattttgtcataatgagcttggcattgtagttttgaac |
11939260 |
T |
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| Q |
208 |
aatcttaggg--tagagttgctcataatataacaacatgagaatctcgttatggttctaatcataagtcttatcattacatttcatc-----gagaatct |
300 |
Q |
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| T |
11939259 |
aatcttagggtatagagttgctcataatataacaa---gagaatctcgttatggttctaatcataagtcttatcattacatttcatcctattgagaatct |
11939163 |
T |
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| Q |
301 |
tatattgaatgaaatgtaataagtttttctccaatcaaataaaaacttgtattcttgctnnnnnnnncaa----taagtgcttagcaaaacttcatgaaa |
396 |
Q |
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| T |
11939162 |
tatattgaatgaaatgtaataagtttttctccaatcaaataaaaacttgtattcttgctaaaaaaaacaataattaagtgcttagcaaaacttcatgaaa |
11939063 |
T |
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| Q |
397 |
catattaagtctagtttgatatatttttttagagaaaatacaacctttataaaag |
451 |
Q |
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| T |
11939062 |
catattaagtctagtttgatata-ttttctagagaaaatacaacctttataaaag |
11939009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 517
Target Start/End: Complemental strand, 11938989 - 11938951
Alignment:
| Q |
479 |
aggagattggcgaggcatcaaggggaagcaacgatatcg |
517 |
Q |
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| T |
11938989 |
aggagattggtgaggcatcaaggggaagaaacgatatcg |
11938951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 24236543 - 24236581
Alignment:
| Q |
294 |
agaatcttatattgaatgaaatgtaataagtttttctcc |
332 |
Q |
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| T |
24236543 |
agaatcttatattgaatgaaatgctataagtttttctcc |
24236581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 472 - 512
Target Start/End: Original strand, 33064805 - 33064845
Alignment:
| Q |
472 |
ctaagtcaggagattggcgaggcatcaaggggaagcaacga |
512 |
Q |
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| T |
33064805 |
ctaagccaggagattggacaggcatcaaggggaagcaacga |
33064845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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