View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5498-Insertion-2 (Length: 930)
Name: NF5498-Insertion-2
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498-Insertion-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 713; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 183 - 930
Target Start/End: Original strand, 40855329 - 40856077
Alignment:
| Q |
183 |
cagagggacaaccagaaagtattgttcaagacattgaaagcttgatccactcatatgttgataaggtagttaaaattaaaagactagcctatacaacttc |
282 |
Q |
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| T |
40855329 |
cagagggacaaccagaaagtattgttcaagacattgaaagcttgatccactcatatgttgataaggtagttaaaattaaaagactagcctatacaacttc |
40855428 |
T |
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| Q |
283 |
ggttccctttggctatctgatgtgatggccttccaaagcaatttccagccctatgttgaagaaatcatattggaggatgatattaacaagttcactgcct |
382 |
Q |
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| T |
40855429 |
ggttccctttggctatctgatgtgatggccttccaaagcaatttccagccctatgttgaagaaatcatattggaggatgatattaacaagttcactgcct |
40855528 |
T |
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| Q |
383 |
ttatttctatcagttcagtagtactagcaagtgatgacaggcaatagttggtcacattcttaatcccaaatatggggctttttaaccttttccattctga |
482 |
Q |
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| T |
40855529 |
ttatttctatcagttcagtagtactagcaagtgatgacaggcattagttggtcacattcttaatcccaaatatggggctttttaaccttttccattctga |
40855628 |
T |
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| Q |
483 |
cataatgctattgaatgtgtgtccaagtaataataatttgaaatttttagtttgtatgtgtggccacacttttaatccttttattcatctattcctaatt |
582 |
Q |
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| T |
40855629 |
cataatgctattgaatgtgtgtccaagtaataataatttgaaatttttagtttgtacgtgtggccacacttttaatccttttattcatctattcctaatt |
40855728 |
T |
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| Q |
583 |
cgttttctttgattttcagcctaattgcttaattttggccattactccagcaaatcaagatgtagcgacatctgatgccatcaaggtttccagacaagtt |
682 |
Q |
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| T |
40855729 |
tgttttctttgattttcagcctaattgcttaattttggccattactccagcaaatcaagatgtagcgacatctgatgccatcaaggtttccagacaagtt |
40855828 |
T |
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| Q |
683 |
gaccctgctggtatgcttgcggcatttttctcacaatcatgcttgaactatacagacagtatgcatttattttcttataatattgttgtttttcttggct |
782 |
Q |
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| T |
40855829 |
gaccctgctggtatgcttgcggcattttgctcacaatcatgcttgaactatacagacagtatgcatttattttcttataatattgttgtttttcttgact |
40855928 |
T |
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| Q |
783 |
gtgcattcaaaatattttccgcttaggtgaacgaacatttggtgtgttgacgaagattgatttgatggacaaaggaacaaatgctttggatgtaagaatc |
882 |
Q |
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| T |
40855929 |
atgcattcaaaatattttccgcttaggtgaacgaacatttggtgtgttgacgaagattgatttgatggacaaaggaacaaatgctttggatgtaagaatc |
40856028 |
T |
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| Q |
883 |
atatcttttctaggcactcaatagtaaatttatgttg-tatatatttgg |
930 |
Q |
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| T |
40856029 |
atatcttttctaggcactcaatagtaaattcatgttgttatatatttgg |
40856077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 40855153 - 40855262
Alignment:
| Q |
7 |
actatttttatatttgttgatagttgtcaacttaacactggtagatctgcctggtttgacaaagttcgctgtaggtacactttcttttcattatcttttc |
106 |
Q |
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| T |
40855153 |
actatttttatatttgttgatagttgtcaacttaacactggtagatctgcctggtttgacaaagttcgctgtaggtacgctttattttcattatcttttc |
40855252 |
T |
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| Q |
107 |
acaaataatc |
116 |
Q |
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| T |
40855253 |
acaaataatc |
40855262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 806 - 877
Target Start/End: Complemental strand, 17106964 - 17106893
Alignment:
| Q |
806 |
taggtgaacgaacatttggtgtgttgacgaagattgatttgatggacaaaggaacaaatgctttggatgtaa |
877 |
Q |
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| T |
17106964 |
taggtgaaaggacatttggagtgttgacaaagttagatttgatggacaaaggaactaatgctttagatgtaa |
17106893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 817 - 877
Target Start/End: Original strand, 2217101 - 2217161
Alignment:
| Q |
817 |
acatttggtgtgttgacgaagattgatttgatggacaaaggaacaaatgctttggatgtaa |
877 |
Q |
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| T |
2217101 |
acatttggcgtgctgacaaagctggatttgatggacaaaggaactaatgcattggatgtaa |
2217161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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