View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5498-Insertion-3 (Length: 930)

Name: NF5498-Insertion-3
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5498-Insertion-3
NF5498-Insertion-3
[»] chr3 (33 HSPs)
chr3 (243-930)||(44432586-44433278)
chr3 (15-218)||(44432336-44432543)
chr3 (786-930)||(44436463-44436612)
chr3 (709-769)||(35359241-35359301)
chr3 (857-930)||(33329752-33329831)
chr3 (880-930)||(51315647-51315698)
chr3 (790-842)||(3192965-3193017)
chr3 (710-765)||(3193042-3193097)
chr3 (711-762)||(17773169-17773220)
chr3 (711-762)||(19074470-19074521)
chr3 (880-930)||(44585949-44586000)
chr3 (711-765)||(28712722-28712776)
chr3 (880-928)||(578576-578625)
chr3 (709-769)||(38958099-38958160)
chr3 (786-822)||(15978895-15978931)
chr3 (790-842)||(25902480-25902532)
chr3 (709-765)||(51315745-51315801)
chr3 (787-842)||(14856622-14856677)
chr3 (786-841)||(25154365-25154420)
chr3 (710-765)||(28204478-28204533)
chr3 (789-930)||(1814626-1814772)
chr3 (792-842)||(7218233-7218282)
chr3 (711-761)||(14340732-14340782)
chr3 (710-760)||(25154447-25154497)
chr3 (880-925)||(54719160-54719206)
chr3 (786-839)||(4474256-4474309)
chr3 (786-839)||(8024849-8024902)
chr3 (710-751)||(14349383-14349424)
chr3 (880-928)||(36567037-36567086)
chr3 (709-762)||(36677521-36677574)
chr3 (709-762)||(36687603-36687656)
chr3 (863-926)||(38177280-38177349)
chr3 (793-842)||(54719072-54719121)
[»] chr5 (30 HSPs)
chr5 (786-930)||(36798271-36798415)
chr5 (786-930)||(12406116-12406254)
chr5 (857-930)||(3999233-3999312)
chr5 (786-930)||(2974733-2974872)
chr5 (858-930)||(39574336-39574413)
chr5 (857-930)||(25910823-25910902)
chr5 (789-907)||(32391796-32391909)
chr5 (713-766)||(32391720-32391773)
chr5 (709-765)||(2974895-2974951)
chr5 (790-842)||(6130333-6130385)
chr5 (790-842)||(40276097-40276149)
chr5 (880-930)||(3333864-3333915)
chr5 (880-929)||(19131663-19131713)
chr5 (711-769)||(20512456-20512514)
chr5 (858-930)||(31080576-31080654)
chr5 (859-930)||(27904620-27904697)
chr5 (713-842)||(35877463-35877592)
chr5 (794-842)||(21066523-21066571)
chr5 (790-842)||(22300795-22300847)
chr5 (857-930)||(9852886-9852965)
chr5 (787-842)||(19340836-19340891)
chr5 (715-765)||(3999089-3999139)
chr5 (881-930)||(16132844-16132894)
chr5 (715-765)||(25364086-25364136)
chr5 (714-764)||(25910987-25911037)
chr5 (709-769)||(35166548-35166610)
chr5 (881-930)||(37887772-37887822)
chr5 (709-769)||(12406038-12406099)
chr5 (789-842)||(20629815-20629867)
chr5 (713-762)||(39574240-39574289)
[»] chr2 (29 HSPs)
chr2 (858-930)||(37431643-37431721)
chr2 (709-769)||(14489467-14489527)
chr2 (788-930)||(5470404-5470551)
chr2 (786-927)||(39918537-39918681)
chr2 (712-765)||(34679351-34679404)
chr2 (857-930)||(14489313-14489392)
chr2 (880-926)||(14943708-14943755)
chr2 (880-930)||(44617902-44617953)
chr2 (711-765)||(21358366-21358420)
chr2 (712-765)||(16043286-16043339)
chr2 (789-842)||(19206218-19206271)
chr2 (789-842)||(31827717-31827769)
chr2 (789-841)||(18709322-18709374)
chr2 (880-930)||(2609252-2609303)
chr2 (710-765)||(5362173-5362228)
chr2 (788-930)||(8857146-8857284)
chr2 (712-763)||(18709247-18709298)
chr2 (710-765)||(19206140-19206195)
chr2 (888-930)||(32969657-32969700)
chr2 (710-745)||(32969808-32969843)
chr2 (880-930)||(35718745-35718796)
chr2 (786-930)||(43028893-43029033)
chr2 (715-769)||(2609081-2609135)
chr2 (788-842)||(6592918-6592971)
chr2 (788-822)||(19399261-19399295)
chr2 (880-929)||(21633170-21633220)
chr2 (712-765)||(15023099-15023152)
chr2 (794-842)||(19895697-19895743)
chr2 (857-928)||(41196365-41196442)
[»] chr7 (29 HSPs)
chr7 (711-766)||(17876417-17876472)
chr7 (855-930)||(36903362-36903443)
chr7 (788-929)||(35250219-35250357)
chr7 (857-930)||(15107127-15107206)
chr7 (711-765)||(4049982-4050036)
chr7 (786-842)||(4049905-4049961)
chr7 (786-842)||(5172707-5172763)
chr7 (711-763)||(14247293-14247345)
chr7 (880-930)||(28350216-28350267)
chr7 (880-929)||(20185018-20185068)
chr7 (711-765)||(28350115-28350169)
chr7 (712-769)||(36580274-36580332)
chr7 (786-928)||(15348052-15348196)
chr7 (711-760)||(15348224-15348273)
chr7 (709-766)||(23826282-23826339)
chr7 (709-769)||(19645058-19645118)
chr7 (709-769)||(28786014-28786074)
chr7 (880-930)||(8073974-8074025)
chr7 (714-765)||(8074136-8074187)
chr7 (712-751)||(21748089-21748128)
chr7 (857-930)||(28785890-28785969)
chr7 (880-930)||(36580438-36580489)
chr7 (715-766)||(48058864-48058915)
chr7 (881-930)||(1450306-1450356)
chr7 (711-769)||(11373846-11373904)
chr7 (786-824)||(18186514-18186552)
chr7 (786-840)||(20185102-20185156)
chr7 (711-765)||(28785755-28785809)
chr7 (712-765)||(20505270-20505323)
[»] chr4 (46 HSPs)
chr4 (857-930)||(12719580-12719659)
chr4 (711-765)||(35383764-35383818)
chr4 (794-930)||(14449356-14449498)
chr4 (794-842)||(21322790-21322838)
chr4 (709-761)||(35393934-35393986)
chr4 (880-930)||(2016891-2016942)
chr4 (857-930)||(43074723-43074802)
chr4 (857-930)||(49185669-49185748)
chr4 (711-769)||(19909172-19909230)
chr4 (880-927)||(25909590-25909638)
chr4 (880-930)||(27978791-27978842)
chr4 (880-930)||(53312387-53312438)
chr4 (715-765)||(14449276-14449326)
chr4 (711-765)||(25909486-25909540)
chr4 (711-769)||(29697778-29697836)
chr4 (711-765)||(43074615-43074669)
chr4 (786-823)||(1420609-1420646)
chr4 (857-928)||(2837001-2837078)
chr4 (855-930)||(20112283-20112364)
chr4 (890-930)||(31553415-31553456)
chr4 (857-928)||(35393402-35393479)
chr4 (712-765)||(49185571-49185623)
chr4 (711-760)||(53312551-53312600)
chr4 (709-766)||(53924744-53924801)
chr4 (792-844)||(2654035-2654087)
chr4 (786-842)||(10059758-10059814)
chr4 (786-842)||(35393852-35393908)
chr4 (880-930)||(2654132-2654183)
chr4 (710-769)||(6207433-6207492)
chr4 (857-930)||(6637198-6637277)
chr4 (880-930)||(10059860-10059911)
chr4 (710-761)||(11824186-11824237)
chr4 (711-766)||(23759560-23759615)
chr4 (880-930)||(35383922-35383973)
chr4 (714-765)||(49185820-49185870)
chr4 (859-928)||(54855405-54855480)
chr4 (709-763)||(1571669-1571723)
chr4 (788-842)||(2181309-2181362)
chr4 (711-765)||(12719707-12719761)
chr4 (881-930)||(12893143-12893193)
chr4 (788-842)||(43074665-43074719)
chr4 (881-930)||(55732668-55732718)
chr4 (855-930)||(4796173-4796254)
chr4 (881-929)||(28291817-28291866)
chr4 (709-738)||(30627061-30627090)
chr4 (712-765)||(50769622-50769675)
[»] chr6 (19 HSPs)
chr6 (711-765)||(12766475-12766529)
chr6 (857-928)||(30349450-30349527)
chr6 (859-930)||(32143358-32143435)
chr6 (709-760)||(28011390-28011441)
chr6 (881-930)||(26311568-26311618)
chr6 (712-762)||(33401317-33401367)
chr6 (788-841)||(10727267-10727320)
chr6 (791-842)||(1377390-1377442)
chr6 (791-842)||(1385138-1385190)
chr6 (790-842)||(33401238-33401290)
chr6 (709-760)||(238927-238978)
chr6 (880-930)||(239108-239159)
chr6 (710-765)||(3579593-3579648)
chr6 (880-930)||(33399884-33399935)
chr6 (715-769)||(1377463-1377517)
chr6 (715-769)||(1385211-1385265)
chr6 (877-930)||(2853575-2853629)
chr6 (786-840)||(12766401-12766454)
chr6 (857-930)||(17532351-17532429)
[»] chr8 (19 HSPs)
chr8 (880-930)||(37813254-37813305)
chr8 (883-930)||(29044713-29044761)
chr8 (857-928)||(44269259-44269331)
chr8 (788-929)||(45177302-45177445)
chr8 (786-837)||(41487275-41487326)
chr8 (711-765)||(17070906-17070960)
chr8 (711-765)||(17577312-17577366)
chr8 (788-842)||(30539065-30539119)
chr8 (711-765)||(37813161-37813215)
chr8 (710-751)||(16982624-16982665)
chr8 (711-751)||(521717-521757)
chr8 (710-769)||(23702121-23702181)
chr8 (794-842)||(44101372-44101420)
chr8 (880-930)||(8952725-8952776)
chr8 (858-927)||(41487346-41487421)
chr8 (881-930)||(14880435-14880485)
chr8 (788-842)||(35213105-35213159)
chr8 (712-765)||(36688258-36688311)
chr8 (709-766)||(39889769-39889826)
[»] chr1 (18 HSPs)
chr1 (857-928)||(14978898-14978975)
chr1 (711-764)||(39642199-39642252)
chr1 (790-930)||(3377601-3377747)
chr1 (786-842)||(12960920-12960976)
chr1 (880-923)||(23480077-23480121)
chr1 (709-769)||(25085396-25085456)
chr1 (880-930)||(14190705-14190756)
chr1 (880-930)||(16874666-16874717)
chr1 (714-765)||(23891662-23891713)
chr1 (712-765)||(3377772-3377825)
chr1 (857-927)||(23220669-23220745)
chr1 (786-842)||(39642275-39642331)
chr1 (860-930)||(50226529-50226605)
chr1 (888-930)||(41997812-41997855)
chr1 (786-842)||(48319587-48319645)
chr1 (709-751)||(25486487-25486529)
chr1 (788-838)||(45739123-45739173)
chr1 (714-763)||(18632602-18632651)
[»] scaffold1458 (1 HSPs)
scaffold1458 (710-765)||(1469-1524)
[»] scaffold0515 (1 HSPs)
scaffold0515 (710-765)||(3637-3692)
[»] scaffold0306 (1 HSPs)
scaffold0306 (710-765)||(3637-3692)
[»] scaffold0015 (1 HSPs)
scaffold0015 (880-930)||(76962-77012)
[»] scaffold0011 (1 HSPs)
scaffold0011 (888-930)||(145453-145496)
[»] scaffold0417 (1 HSPs)
scaffold0417 (710-760)||(9603-9653)
[»] scaffold0062 (1 HSPs)
scaffold0062 (880-929)||(46238-46288)
[»] scaffold0025 (1 HSPs)
scaffold0025 (888-928)||(19200-19241)


Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 243 - 930
Target Start/End: Original strand, 44432586 - 44433278
Alignment:
Q  243 cataattgtggctgttaatcttgttacaggggtgatggaggagaaagaactgtgaagaaggtcaaattgtcgaaggctctcaccatccccgatgggacaa 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44432586 cataattgtggctgttaatcttgttacaggggtgatggaggagaaagaactgtgaagaaggtcaaattgtcgaaggctctcaccatccccgatgggacaa 44432685  T
Q  343 ccgttacggatgcatgtagacgaatggccgctcgccgtgtcgatgcggttcttttaactgattccagtgctcttctttctggaattctcactgacaaggt 442  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44432686 ccgttacggatgcatgtagacgaatggccgctcgccgtgtcgacgcggttcttttaactgattccagtgctcttctttctggaattctcactgacaaggt 44432785  T
Q  443 ctctctctttttctatattttatgttttatttccttcattcaaattcaaattcaatgttcaatgttgtttgttaatttgttttgtggttcaggatgttgc 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44432786 ctctctctttttctatattttatgttttatttccttcattcaaattcaaattcaatgttcaatgttgtttgttaatttgttttgtggttcaggatgttgc 44432885  T
Q  543 tactagagttgtggctgagggattgtcaccggatgagacacatgtctccaaagttatgacacggaatcctatttttgttacatctgatacactcgccatt 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44432886 tactagagttgtggctgagggattgtcaccggatgagacacatgtctccaaagttatgacacggaatcctatttttgttacatctgatacactcgccatt 44432985  T
Q  643 gatgctcttcagaagatgattcagggttagttagttgttattaatgttttctttgtttcacctttcttaggcttaatagcagttttcaccccctaacttt 742  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  44432986 gatgctcttcagaagatgattcagggttagttagttgttattaatgttttctttgtttcacctttcttaggcttaatagcaattttca-cccctaacttt 44433084  T
Q  743 caccaagttctgattttggcccctaag--nnnnnnnnnnnnnnnnccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttg 840  Q
    ||| ||||| |||||||||| ||||||                  |||||||||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  44433085 cacgaagttgtgattttggctcctaagaaaaaaaaaactaaaaaaccgccccctaggttttgcaactatagcagttttggcctcccaaggccaatttttg 44433184  T
Q  841 gttannnnnnnnnnataaaaataacatgtggcacctcac----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    | ||           ||||||||||| ||| ||||| ||    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  44433185 g-taatttttttttttaaaaataacacgtgacacctaacttaggtgccacatcagcgtagaccgggtcaaaattggccttgggggccaaaactgc 44433278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 44432336 - 44432543
Alignment:
Q  15 ggtacaggttcattgatacatacatttggta----agtaagaaaagacaaattaagagcgcgcgaaagagattagaaaatgaagaagacaacaacaaaac 110  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44432336 ggtacaggttcattgatacatacatttggtggtagagtaagaaaagacaaattaagagcgcgcgaaagagattagaaaatgaagaagacaacaacaaaac 44432435  T
Q  111 gcccttccaagaaatcccacgccgccgaaaatggaaacggaaagcctccttccccttctttccaaccgtataatctcattcttcaatcacattcaaatct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44432436 gcccttccaagaaatcccacgccgccgaaaatggaaacggaaagcctccttccccttcttcccaaccgtataatctcattcttcaatcacattcaaatct 44432535  T
Q  211 atattcta 218  Q
    ||||||||    
T  44432536 atattcta 44432543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 786 - 930
Target Start/End: Original strand, 44436463 - 44436612
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----g 880  Q
    |||||||||||||||||||||| || ||||||||||| ||| |||||||||| |||| |          | |||||||||| ||||||||||||     |    
T  44436463 ccgccccctaagttttgcaactgtagcagttttggccccccaaggccaatttgtggtaaaaaataaaata-aaaaataacacgtggcacctcacttaggg 44436561  T
Q  881 tgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  44436562 tgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgc 44436612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 709 - 769
Target Start/End: Complemental strand, 35359301 - 35359241
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||| | |||||||||||||||    
T  35359301 ttaggcttaatagtagttttcaccctctaactttcacgaagttgtaattttggcccctaag 35359241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 930
Target Start/End: Original strand, 33329752 - 33329831
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||| ||||||||||||     ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||    
T  33329752 aaaaataacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaactgc 33329831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 51315647 - 51315698
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  51315647 gtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgc 51315698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 842
Target Start/End: Complemental strand, 3193017 - 3192965
Alignment:
Q  790 cccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||||||| |||||||||||||| ||| ||| |||||||||||    
T  3193017 cccctaagttttgcaactgtaacagttttggccccccaaggtcaatttttggt 3192965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 710 - 765
Target Start/End: Complemental strand, 3193097 - 3193042
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||||||||||||||||||||  |||||  ||||||| ||||    
T  3193097 taggcttaatagcagttttcaccccctaactttcaagaagttgcgattttgacccc 3193042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 711 - 762
Target Start/End: Original strand, 17773169 - 17773220
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggc 762  Q
    ||||||||||||||||||| ||||||||||||||| |||||  |||||||||    
T  17773169 aggcttaatagcagttttcgccccctaactttcactaagttgcgattttggc 17773220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 711 - 762
Target Start/End: Original strand, 19074470 - 19074521
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggc 762  Q
    ||||||||||||||||||| ||||||||||||||| |||||  |||||||||    
T  19074470 aggcttaatagcagttttcgccccctaactttcactaagttgcgattttggc 19074521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 44585949 - 44586000
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  44585949 gtgccacgtcagcgtagaccgagtcaaaattggccgtgggggccaaaactgc 44586000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 765
Target Start/End: Complemental strand, 28712776 - 28712722
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||| |||||||||||| |  ||||| |||||||||||||    
T  28712776 aggcttaatagcagttttcgccccctaacttttatgaagttgtgattttggcccc 28712722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 578576 - 578625
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaact 928  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  578576 gtgccacgtcagcatagaccgagtcaaaattggccttgggggccaaaact 578625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 709 - 769
Target Start/End: Complemental strand, 38958160 - 38958099
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttg-gcccctaag 769  Q
    ||||||||||||||||||||| ||||||||||||||| || ||  ||||||| |||||||||    
T  38958160 ttaggcttaatagcagttttcgccccctaactttcacgaaattacgattttgagcccctaag 38958099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 786 - 822
Target Start/End: Complemental strand, 15978931 - 15978895
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcc 822  Q
    ||||||||||||||||||||||||| |||||||||||    
T  15978931 ccgccccctaagttttgcaactatagcagttttggcc 15978895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 790 - 842
Target Start/End: Original strand, 25902480 - 25902532
Alignment:
Q  790 cccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||||| |||||||||| |||||||||||||| ||| || ||||||||||||    
T  25902480 cccctaaattttgcaactgtaacagttttggccccccaagaccaatttttggt 25902532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 709 - 765
Target Start/End: Complemental strand, 51315801 - 51315745
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||||  ||||||||||||| | |||||  ||||||||||||    
T  51315801 ttaggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 51315745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 14856622 - 14856677
Alignment:
Q  787 cgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||| |||||||||||||||||  |||||||||| ||| | |||||||||||||    
T  14856622 cgccccataagttttgcaactatagtagttttggccccccaatgccaatttttggt 14856677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 786 - 841
Target Start/End: Complemental strand, 25154420 - 25154365
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttgg 841  Q
    ||||||| |||||||||||||| || ||||||||||| ||| ||||||||| ||||    
T  25154420 ccgccccttaagttttgcaactgtagcagttttggccccccaaggccaattattgg 25154365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 765
Target Start/End: Original strand, 28204478 - 28204533
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||||| |||| |||||||||| |||||  ||||||| ||||    
T  28204478 taggcttaatagcagttttcgccccttaactttcacgaagttgcgattttgacccc 28204533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 789 - 930
Target Start/End: Original strand, 1814626 - 1814772
Alignment:
Q  789 ccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----gtgc 883  Q
    |||| ||||||||||||||||| ||||||| ||| ||| |||||||||||||| ||          | |||||||||| ||||||||||||     ||||    
T  1814626 ccccttaagttttgcaactatagcagtttttgcc-cccaaggccaatttttgg-taaaaaaaaaataaaaaaataacacgtggcacctcacttagggtgc 1814723  T
Q  884 cacatcagcgtagaccgagtc-aaattggcctt-gggggccaaaactgc 930  Q
    ||| ||||||||||||||||| ||||||  ||| |||||||||||||||    
T  1814724 cacgtcagcgtagaccgagtcaaaattgatcttagggggccaaaactgc 1814772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 792 - 842
Target Start/End: Original strand, 7218233 - 7218282
Alignment:
Q  792 cctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||||||||||||||||| |||||||||||| || |||||| ||||||||    
T  7218233 cctaagttttgcaactatagcagttttggcct-ccaaggccattttttggt 7218282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 711 - 761
Target Start/End: Original strand, 14340732 - 14340782
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttgg 761  Q
    ||||||||||| ||||||| ||||||||||||||| |||||  ||||||||    
T  14340732 aggcttaataggagttttcgccccctaactttcacgaagttacgattttgg 14340782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 25154497 - 25154447
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttg 760  Q
    ||||||||||||||||||| |||||||||||||  | ||||| ||||||||    
T  25154497 taggcttaatagcagttttaaccccctaactttaccaaagttgtgattttg 25154447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 880 - 925
Target Start/End: Original strand, 54719160 - 54719206
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaa 925  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  54719160 gtgccacgtcagcgtagaccgagtcaaaattggcattgggggccaaa 54719206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 839
Target Start/End: Complemental strand, 4474309 - 4474256
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaattttt 839  Q
    |||||| ||||||||||||||| || ||||||||||| ||| || |||||||||    
T  4474309 ccgccctctaagttttgcaactgtagcagttttggccccccaagaccaattttt 4474256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 839
Target Start/End: Original strand, 8024849 - 8024902
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaattttt 839  Q
    |||||||||| ||||||||||| || ||||||||||| ||| | ||||||||||    
T  8024849 ccgccccctacgttttgcaactgtagcagttttggccccccaaagccaattttt 8024902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 751
Target Start/End: Complemental strand, 14349424 - 14349383
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagtt 751  Q
    |||||||||||||||||||| |||||||||||| || |||||    
T  14349424 taggcttaatagcagttttcgccccctaacttttacgaagtt 14349383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 36567037 - 36567086
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaact 928  Q
    ||||||| ||||||| ||||||||| |||| |||||||||||||||||||    
T  36567037 gtgccacgtcagcgttgaccgagtcaaaatcggccttgggggccaaaact 36567086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 762
Target Start/End: Original strand, 36677521 - 36677574
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggc 762  Q
    |||||||||||| |||||||| ||| ||||||||||| |||||  |||||||||    
T  36677521 ttaggcttaataacagttttcgcccgctaactttcacgaagttgcgattttggc 36677574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 762
Target Start/End: Original strand, 36687603 - 36687656
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggc 762  Q
    |||||||||||| |||||||| ||| ||||||||||| |||||  |||||||||    
T  36687603 ttaggcttaataacagttttcgcccgctaactttcacgaagttgcgattttggc 36687656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 926
Target Start/End: Complemental strand, 38177349 - 38177280
Alignment:
Q  863 aacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaa 926  Q
    |||||||||||||||||     ||||||| |||||| | ||||||||||| |||||||||||||||||||    
T  38177349 aacatgtggcacctcacttagggtgccacgtcagcgcaaaccgagtcaaaattggccttgggggccaaaa 38177280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 793 - 842
Target Start/End: Original strand, 54719072 - 54719121
Alignment:
Q  793 ctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||||||||||||| || ||||||||||| ||| ||| |||||||||||    
T  54719072 ctaagttttgcaactgtagcagttttggccccccaaggtcaatttttggt 54719121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 786 - 930
Target Start/End: Complemental strand, 36798415 - 36798271
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----g 880  Q
    |||||||||||||||||||||| || ||||||||||| ||| | |||||||||| || |          |||||||||||||||||||||||||     |    
T  36798415 ccgccccctaagttttgcaactgtagcagttttggccccccaaagccaattttttgtaataaaa-----ataaaaataacatgtggcacctcacttagag 36798321  T
Q  881 tgccacatcagcgtagaccgagtcaaattggccttgggggccaaaactgc 930  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  36798320 tgccacgtcagtgtagaccgagtcaaattggtcttgggggccaaaactgc 36798271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 786 - 930
Target Start/End: Original strand, 12406116 - 12406254
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----g 880  Q
    |||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||| |            |||||||||| ||||||||||||     |    
T  12406116 ccgccccctaagttttgcaactgta-cagttttggccccccaaggccaatttttggtaaa-----------aaaaataacacgtggcacctcacttaggg 12406203  T
Q  881 tgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  12406204 tgccacgtcagcgtagactgagtcaaaattggccttgggggccaaaactgc 12406254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 857 - 930
Target Start/End: Original strand, 3999233 - 3999312
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||||||||||||||||||||     ||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  3999233 aaaaataacatgtggcacctcacttaaggtgccacgtcagcgtagaccaagtcaaaattggccttgggggccaaaactgc 3999312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 786 - 930
Target Start/End: Complemental strand, 2974872 - 2974733
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----g 880  Q
    ||||||||||||||||||| || || ||||||||||| ||  ||||||||||||||| |            |||||| ||||||||||||||||     |    
T  2974872 ccgccccctaagttttgcacctgtagcagttttggccccctaaggccaatttttggtaaa-----------aaaaattacatgtggcacctcacttaggg 2974784  T
Q  881 tgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  2974783 tgccacgtcagcgtagaccgagtcaaaattggcattgggggccaaaactgc 2974733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 858 - 930
Target Start/End: Complemental strand, 39574413 - 39574336
Alignment:
Q  858 aaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaattggccttgggggccaaaactgc 930  Q
    ||||||||||||||||| ||||     ||| ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  39574413 aaaataacatgtggcacgtcacttatggtgtcacgtcagcgtagaccgagtcaaattggtcttgggggccaaaactgc 39574336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 930
Target Start/End: Complemental strand, 25910902 - 25910823
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||||||| ||||||||     ||||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  25910902 aaaaataacatgtgacacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgc 25910823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 789 - 907
Target Start/End: Original strand, 32391796 - 32391909
Alignment:
Q  789 ccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----gtgc 883  Q
    ||||||||||||||||||| || ||||||||||| ||| |||||||||||||||            | |||||||||||||||||||||||     ||||    
T  32391796 ccccctaagttttgcaactgtagcagttttggccccccaaggccaatttttggt----------agaaaaaaataacatgtggcacctcacttagggtgc 32391885  T
Q  884 cacatcagcgtagaccgagtcaaa 907  Q
    ||| ||||||||||||||||||||    
T  32391886 cacgtcagcgtagaccgagtcaaa 32391909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 713 - 766
Target Start/End: Original strand, 32391720 - 32391773
Alignment:
Q  713 gcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccct 766  Q
    ||||||||||||||||| |||| |||||||||| ||||| ||||||||||||||    
T  32391720 gcttaatagcagttttcgccccttaactttcacgaagttgtgattttggcccct 32391773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 765
Target Start/End: Complemental strand, 2974951 - 2974895
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||||  ||||||||||||||| |||||  ||||||||||||    
T  2974951 ttaggcttaatagcagtttttgccccctaactttcacgaagttgcgattttggcccc 2974895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 842
Target Start/End: Original strand, 6130333 - 6130385
Alignment:
Q  790 cccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||||||| || ||||||||||| ||| |||||||||||||||    
T  6130333 cccctaagttttgcaactgtagcagttttggccccccaaggccaatttttggt 6130385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 842
Target Start/End: Original strand, 40276097 - 40276149
Alignment:
Q  790 cccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||||||| || ||||||||||| ||| |||||||||||||||    
T  40276097 cccctaagttttgcaactgtagcagttttggccccccaaggccaatttttggt 40276149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 3333864 - 3333915
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  3333864 gtgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgc 3333915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 880 - 929
Target Start/End: Original strand, 19131663 - 19131713
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactg 929  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  19131663 gtgccacgtcagcgtagaccgagtcaaaattggccttcggggccaaaactg 19131713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 769
Target Start/End: Complemental strand, 20512514 - 20512456
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    ||||||||||||||||||| || | |||||||||| |||||  ||||||||||||||||    
T  20512514 aggcttaatagcagttttcgcctcttaactttcacgaagttgcgattttggcccctaag 20512456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 858 - 930
Target Start/End: Complemental strand, 31080654 - 31080576
Alignment:
Q  858 aaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||||| ||||||||||||     ||||||| ||||| |||||||||| ||| |||||||||||||||||||||||    
T  31080654 aaaataacacgtggcacctcacttagggtgccacgtcagcatagaccgagttaaaattggccttgggggccaaaactgc 31080576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 859 - 930
Target Start/End: Original strand, 27904620 - 27904697
Alignment:
Q  859 aaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||| ||||||||||||     ||||||| ||||||||||||||||| ||||||| |||||||| |||||||||    
T  27904620 aaataacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggtcttgggggacaaaactgc 27904697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 713 - 842
Target Start/End: Complemental strand, 35877592 - 35877463
Alignment:
Q  713 gcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaagnnnnnnnnnnnnnnnnccgccccctaagttttgcaactataac 812  Q
    ||||||||||||||||||||||||||||||||| | |||   |||||| ||||||||                |||||||||||||||||||||| ||||    
T  35877592 gcttaatagcagttttcaccccctaactttcacgaggttgcaattttgacccctaagaaaaaaaactacaaaaccgccccctaagttttgcaactgtaac 35877493  T
Q  813 agttttggcctccccaggccaatttttggt 842  Q
     |||||| ||| ||  ||||||||||||||    
T  35877492 ggttttgaccttccagggccaatttttggt 35877463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 794 - 842
Target Start/End: Complemental strand, 21066571 - 21066523
Alignment:
Q  794 taagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||| || ||||||||||| ||| |||||||||||||||    
T  21066571 taagttttgcaactgtagcagttttggccccccaaggccaatttttggt 21066523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 790 - 842
Target Start/End: Complemental strand, 22300847 - 22300795
Alignment:
Q  790 cccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||||||| || |||||||||||  || |||||||||||||||    
T  22300847 cccctaagttttgcaactgtagcagttttggccctccaaggccaatttttggt 22300795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 930
Target Start/End: Complemental strand, 9852965 - 9852886
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||||||| ||||||||||||     ||||||| |||||||||| | ||||||| ||||||||||| |||||||||||    
T  9852965 aaaaataacacgtggcacctcacttagggtgccacgtcagcgtagatcaagtcaaaattggccttgggagccaaaactgc 9852886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 842
Target Start/End: Original strand, 19340836 - 19340891
Alignment:
Q  787 cgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||||||||||||||||||| || ||||||||||| ||| ||  |||||||||||    
T  19340836 cgccccctaagttttgcaactgtagcagttttggccccccaagatcaatttttggt 19340891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 765
Target Start/End: Original strand, 3999089 - 3999139
Alignment:
Q  715 ttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||| ||||||||||||||| |||||  ||||||| ||||    
T  3999089 ttaatagcagttttcgccccctaactttcacgaagttgcgattttgacccc 3999139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 881 - 930
Target Start/End: Complemental strand, 16132894 - 16132844
Alignment:
Q  881 tgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||||||||||||||  ||||||| |||||||||||| ||||||||||    
T  16132894 tgccacatcagcgtagacaaagtcaaaattggccttggggaccaaaactgc 16132844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 765
Target Start/End: Complemental strand, 25364136 - 25364086
Alignment:
Q  715 ttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||| ||||||||||| |||||   |||||||||||    
T  25364136 ttaatagcagttttcaccctctaactttcacgaagttgcaattttggcccc 25364086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 714 - 764
Target Start/End: Complemental strand, 25911037 - 25910987
Alignment:
Q  714 cttaatagcagttttcaccccctaactttcaccaagttctgattttggccc 764  Q
    |||||||||||||||| ||||||||||||||| |||||  |||||| ||||    
T  25911037 cttaatagcagttttcgccccctaactttcacgaagttgagattttagccc 25910987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 709 - 769
Target Start/End: Complemental strand, 35166610 - 35166548
Alignment:
Q  709 ttaggcttaatagcagttttc-accccctaactttcaccaagttctgattttgg-cccctaag 769  Q
    |||||||||||||||||||||  ||||||||||||||| |||||  |||||||| ||||||||    
T  35166610 ttaggcttaatagcagttttcgcccccctaactttcacgaagttgcgattttggtcccctaag 35166548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 881 - 930
Target Start/End: Complemental strand, 37887822 - 37887772
Alignment:
Q  881 tgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||||||||| ||||| ||||||| |||| ||||||||||||||||||    
T  37887822 tgccacatcagcgaagaccaagtcaaaattggtcttgggggccaaaactgc 37887772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 769
Target Start/End: Original strand, 12406038 - 12406099
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttgg-cccctaag 769  Q
    ||||||||||||||||||||  ||||||||||||| | |||||  |||||||| ||||||||    
T  12406038 ttaggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 12406099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 842
Target Start/End: Original strand, 20629815 - 20629867
Alignment:
Q  789 ccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||| |||| |||||||||||| | ||| |||||||||||||||    
T  20629815 ccccctaagttttgaaactgtaacagttttggtc-cccaaggccaatttttggt 20629867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 713 - 762
Target Start/End: Original strand, 39574240 - 39574289
Alignment:
Q  713 gcttaatagcagttttcaccccctaactttcaccaagttctgattttggc 762  Q
    ||||||||||||||||| ||| ||||||||||| |||||  |||||||||    
T  39574240 gcttaatagcagttttcgccctctaactttcacgaagttgcgattttggc 39574289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 858 - 930
Target Start/End: Complemental strand, 37431721 - 37431643
Alignment:
Q  858 aaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||||||||||||||||||     ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  37431721 aaaataacatgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgc 37431643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 709 - 769
Target Start/End: Complemental strand, 14489527 - 14489467
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||||||||||    
T  14489527 ttaggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggcccctaag 14489467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 788 - 930
Target Start/End: Original strand, 5470404 - 5470551
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----gtg 882  Q
    |||||||||||||||||| | || ||||||||||| ||| ||||||||||||||| |          ||||| | |||| ||||||||||||     |||    
T  5470404 gccccctaagttttgcaattgtagcagttttggcc-cccaaggccaatttttggtaaaaaaataataataaataaaacacgtggcacctcacttagggtg 5470502  T
Q  883 ccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  5470503 ccacgtcagcatagaccgagtcaaaattggccttgggggccaaaactgc 5470551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 786 - 927
Target Start/End: Complemental strand, 39918681 - 39918537
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----g 880  Q
    |||||||||||||||||||||| || || |||||||| ||| ||||||||||||||| |            |||||||||| ||||||||||||     |    
T  39918681 ccgccccctaagttttgcaactgtagcaattttggccccccaaggccaatttttggtaaaaaaaaata---aaaaataacacgtggcacctcacttaggg 39918585  T
Q  881 tgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaac 927  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  39918584 tgccacgtcagcgaagaccgagtcaaaattggccttgggggccaaaac 39918537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 712 - 765
Target Start/End: Complemental strand, 34679404 - 34679351
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||  ||||||||||||||| ||||| |||||||||||||    
T  34679404 ggcttaatagcagtttttgccccctaactttcacgaagttgtgattttggcccc 34679351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 857 - 930
Target Start/End: Complemental strand, 14489392 - 14489313
Alignment:
Q  857 aaaaataacatgtggcacctcacgt-----gccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||| ||||||||||||||     ||||||||||||||||||||||| ||||||| ||||| || |||||||||    
T  14489392 aaaaataacacgtggcacctcacgtagggtgccacatcagcgtagaccgagtcaaaattggtcttggaggtcaaaactgc 14489313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 926
Target Start/End: Original strand, 14943708 - 14943755
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaa 926  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  14943708 gtgccacatcagcgtagaccgagtcaaaattagccttgggggccaaaa 14943755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 44617902 - 44617953
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||    
T  44617902 gtgccacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaactgc 44617953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 765
Target Start/End: Complemental strand, 21358420 - 21358366
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||  ||||||||||||| | ||||| |||||||||||||    
T  21358420 aggcttaatagcagtttttgccccctaactttctcaaagttgtgattttggcccc 21358366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 765
Target Start/End: Complemental strand, 16043339 - 16043286
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||| |||||||||| ||||||||||||||| |||||  ||||||||||||    
T  16043339 ggcttaacagcagttttcgccccctaactttcacgaagttacgattttggcccc 16043286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 789 - 842
Target Start/End: Original strand, 19206218 - 19206271
Alignment:
Q  789 ccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||||||||||| ||||| || ||||||||||| ||| |||||||||||||||    
T  19206218 ccccctaagttttacaactgtagcagttttggccccccaaggccaatttttggt 19206271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 789 - 842
Target Start/End: Complemental strand, 31827769 - 31827717
Alignment:
Q  789 ccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||||||||||||||||| || ||||||||||| ||| |||||||||||||||    
T  31827769 ccccctaagttttgcaactgtagcagttttggcc-cccaaggccaatttttggt 31827717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 789 - 841
Target Start/End: Original strand, 18709322 - 18709374
Alignment:
Q  789 ccccctaagttttgcaactataacagttttggcctccccaggccaatttttgg 841  Q
    |||||||||||||||||||||| |||||||||||   | ||||||||||||||    
T  18709322 ccccctaagttttgcaactatagcagttttggcccaacaaggccaatttttgg 18709374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 2609252 - 2609303
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||||||||||||||||||||| ||||||  |||||||| |||||||||    
T  2609252 gtgccacatcagcgtagaccgagtcaaaattgatcttgggggtcaaaactgc 2609303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 765
Target Start/End: Original strand, 5362173 - 5362228
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||| | ||||| ||||||||||||||| |||||  ||||||||||||    
T  5362173 taggcttaatagtaattttcgccccctaactttcacaaagttgcgattttggcccc 5362228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 930
Target Start/End: Complemental strand, 8857284 - 8857146
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctc-----acgtg 882  Q
    ||||| ||||||||||||||||| |||||||||||| || ||| |||||||||||            | |||||||||| ||||||||||     | |||    
T  8857284 gccccataagttttgcaactatagcagttttggcct-ccaaggtcaatttttggt---------agaaaaaaaataacacgtggcacctcatttaaggtg 8857195  T
Q  883 ccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||||| |||| |||| |||||||| |||||||||||||||||    
T  8857194 ccacatcagcgttgaccaagtcaaaattggcattgggggccaaaactgc 8857146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 763
Target Start/End: Original strand, 18709247 - 18709298
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcc 763  Q
    ||||||||||||||||||  |||||||||||||| |||||  ||||||||||    
T  18709247 ggcttaatagcagttttcgtcccctaactttcacgaagtttcgattttggcc 18709298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 765
Target Start/End: Original strand, 19206140 - 19206195
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||| ||||| |||||||| |||||| |||||  ||||||||||||    
T  19206140 taggcttaatagcaattttcgccccctaattttcacaaagttgcgattttggcccc 19206195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 888 - 930
Target Start/End: Complemental strand, 32969700 - 32969657
Alignment:
Q  888 tcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  32969700 tcagcgtagaccgagtcaaaattggccttgggagccaaaactgc 32969657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 745
Target Start/End: Complemental strand, 32969843 - 32969808
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcac 745  Q
    |||||||||||||||||||| |||||||||||||||    
T  32969843 taggcttaatagcagttttcgccccctaactttcac 32969808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Complemental strand, 35718796 - 35718745
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||||||| ||||||| |||||||| |||||||||| ||||||||||||    
T  35718796 gtgccacatcaccgtagactgagtcaaaattggccttggaggccaaaactgc 35718745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 786 - 930
Target Start/End: Complemental strand, 43029033 - 43028893
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----g 880  Q
    |||||||||||||||| ||| | || ||||||||||| | | |||||||||||||||||          | ||||||||||  |||||||||||     |    
T  43029033 ccgccccctaagttttacaattgtagcagttttggccccacaaggccaatttttggtta----------aaaaaaataacacttggcacctcacttaggg 43028944  T
Q  881 tgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||| ||||||||||||||||| ||||||||| | | ||||||||||||    
T  43028943 tgccacgtcagcgtagaccgagtcaaaattggccctagaggccaaaactgc 43028893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 769
Target Start/End: Original strand, 2609081 - 2609135
Alignment:
Q  715 ttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    ||||||| ||||||| |||||||||||| || ||||| ||||||||||| |||||    
T  2609081 ttaatagtagttttcgccccctaacttttacgaagttttgattttggcctctaag 2609135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 842
Target Start/End: Complemental strand, 6592971 - 6592918
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||||||||| || ||||||||||| ||| | |||||||||||||    
T  6592971 gccccctaagttttgcaactgtagcagttttggcc-cccaaagccaatttttggt 6592918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 822
Target Start/End: Original strand, 19399261 - 19399295
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcc 822  Q
    |||||||||||||| ||||||||||||||||||||    
T  19399261 gccccctaagtttttcaactataacagttttggcc 19399295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 880 - 929
Target Start/End: Original strand, 21633170 - 21633220
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactg 929  Q
    ||||||||||||||| ||||||||| ||||||| || ||||||||||||||    
T  21633170 gtgccacatcagcgttgaccgagtcaaaattggtctagggggccaaaactg 21633220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 765
Target Start/End: Complemental strand, 15023152 - 15023099
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||  ||||||||||||||  ||||| |||||||| ||||    
T  15023152 ggcttaatagcagttttggccccctaactttcaagaagttgtgattttgacccc 15023099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 794 - 842
Target Start/End: Original strand, 19895697 - 19895743
Alignment:
Q  794 taagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||||||||||||||| |||||||||  |||| |||||||||||||||    
T  19895697 taagttttgcaactatagcagttttgg--tcccaaggccaatttttggt 19895743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 857 - 928
Target Start/End: Original strand, 41196365 - 41196442
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaact 928  Q
    |||||||||||||||||||||||     ||||||| |||||||||||| |||| |||||| | |||||||| ||||||    
T  41196365 aaaaataacatgtggcacctcacttagggtgccacgtcagcgtagaccaagtctaaattgacattgggggcaaaaact 41196442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 711 - 766
Target Start/End: Complemental strand, 17876472 - 17876417
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccct 766  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  17876472 aggcttaatagcagttttcaccccctaactttcacgaagttacgattttggcccct 17876417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 855 - 930
Target Start/End: Complemental strand, 36903443 - 36903362
Alignment:
Q  855 ataaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||||||||||||||||||     ||||||  ||||||||||||||||| |||||||||||| |||||||||||||    
T  36903443 ataaaaataacatgtggcacctcacttagggtgccatgtcagcgtagaccgagtcaaaattggccttgagggccaaaactgc 36903362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 788 - 929
Target Start/End: Complemental strand, 35250357 - 35250219
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----gtg 882  Q
    |||||||||||||||||||| || ||||||||||| ||| || |||||||||||| |          | |||||||||| ||||||||||||     |||    
T  35250357 gccccctaagttttgcaactgtagcagttttggccccccaagaccaatttttggtaaa---------aaaaaaataacacgtggcacctcacttaaggtg 35250267  T
Q  883 ccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactg 929  Q
    |||| |||| ||||||||||||||| |||||||||||| |||||||||    
T  35250266 ccacgtcagtgtagaccgagtcaaaattggccttggggtccaaaactg 35250219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 930
Target Start/End: Original strand, 15107127 - 15107206
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||||||||||||||||     |||||||||||| |||||||||||| |||||||| |||| ||||||||||||    
T  15107127 aaaaataacatgtggcacctcacttagggtgccacatcagtgtagaccgagtcaaaattggcattggaggccaaaactgc 15107206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 765
Target Start/End: Complemental strand, 4050036 - 4049982
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||    
T  4050036 aggcttaatagcagttttcgccccttaactttcacgaagttgtgattttggcccc 4049982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 842
Target Start/End: Complemental strand, 4049961 - 4049905
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||| ||||||||| || ||||||||||| ||| |||||||||||||||    
T  4049961 ccgccccctaaggtttgcaactgtagcagttttggccccccaaggccaatttttggt 4049905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 842
Target Start/End: Complemental strand, 5172763 - 5172707
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||||||||||| || ||||||||| | ||| |||||||||||||||    
T  5172763 ccgccccctaagttttgcaactgtagcagttttggtcccccaaggccaatttttggt 5172707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 711 - 763
Target Start/End: Original strand, 14247293 - 14247345
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcc 763  Q
    ||||||||||||||||||| || |||||||||||| ||||| |||||||||||    
T  14247293 aggcttaatagcagttttcgccacctaactttcacgaagttgtgattttggcc 14247345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 930
Target Start/End: Complemental strand, 28350267 - 28350216
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||||||    
T  28350267 gtgccacatcagcgtagatcgagtcaaaattggtcttgggggccaaaactgc 28350216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 880 - 929
Target Start/End: Complemental strand, 20185068 - 20185018
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactg 929  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  20185068 gtgctacatcagcgtagaccgagtcaaaattgaccttgggggccaaaactg 20185018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 765
Target Start/End: Original strand, 28350115 - 28350169
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||  ||||||||||||||| |||||  ||||||||||||    
T  28350115 aggcttaatagcagttttagccccctaactttcacgaagttacgattttggcccc 28350169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 712 - 769
Target Start/End: Original strand, 36580274 - 36580332
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttgg-cccctaag 769  Q
    ||||||||||||||||||  |||||||||||||| ||||| ||||||||| ||||||||    
T  36580274 ggcttaatagcagttttcggcccctaactttcacgaagttgtgattttggtcccctaag 36580332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 786 - 928
Target Start/End: Complemental strand, 15348196 - 15348052
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----g 880  Q
    |||||||||||||||||||||  || ||||||||||| ||| ||||||||||||||| |          |  ||| |||||||||| |||||||     |    
T  15348196 ccgccccctaagttttgcaaccgtagcagttttggcc-cccaaggccaatttttggtaa---aaataaaaagaaattaacatgtggaacctcacttaggg 15348101  T
Q  881 tgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaact 928  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  15348100 tgccacatcagcgtagaccgagtcaaaattgaccttgggggccataact 15348052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 760
Target Start/End: Complemental strand, 15348273 - 15348224
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttg 760  Q
    ||||||||||||||| ||||||||||||||||||| |||||  |||||||    
T  15348273 aggcttaatagcagtattcaccccctaactttcacgaagttgcgattttg 15348224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 709 - 766
Target Start/End: Complemental strand, 23826339 - 23826282
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccct 766  Q
    ||||||||||||||||||||   |||||||||||||| |||||  |||||||||||||    
T  23826339 ttaggcttaatagcagtttttgtcccctaactttcacgaagttgcgattttggcccct 23826282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 709 - 769
Target Start/End: Complemental strand, 19645118 - 19645058
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    ||||| ||||||||| ||||| |||| |||||||||| |||||  ||||||||||||||||    
T  19645118 ttaggtttaatagcaattttcgccccttaactttcacgaagttgcgattttggcccctaag 19645058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 709 - 769
Target Start/End: Complemental strand, 28786074 - 28786014
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    |||||||||||||||||||| ||||| |||||||  | ||||| |||||||||||| ||||    
T  28786074 ttaggcttaatagcagttttaaccccataacttttccaaagttgtgattttggcccttaag 28786014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Complemental strand, 8074025 - 8073974
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||| |||||| ||||||| ||||| |||||||||||||||||||||||    
T  8074025 gtgccacgtcagcgaagaccgaatcaaaattggccttgggggccaaaactgc 8073974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 765
Target Start/End: Complemental strand, 8074187 - 8074136
Alignment:
Q  714 cttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||| ||||||||||||||| |||||  |||||| |||||    
T  8074187 cttaatagcagttttcgccccctaactttcacgaagttacgattttagcccc 8074136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 751
Target Start/End: Complemental strand, 21748128 - 21748089
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagtt 751  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  21748128 ggcttaatagcagttttcgccccctaactttcacgaagtt 21748089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 930
Target Start/End: Original strand, 28785890 - 28785969
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||| ||||||||||||     ||| ||| ||||||||||||||||| ||||| |||||||||| |||||||||    
T  28785890 aaaaataacacgtggcacctcacttagggtgtcacgtcagcgtagaccgagtcaaaattagccttgggggtcaaaactgc 28785969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 36580438 - 36580489
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||||||||| |||||| | |||||||||||||||||    
T  36580438 gtgccacgtcagcgtagaccgagtcaaaattgactttgggggccaaaactgc 36580489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 766
Target Start/End: Original strand, 48058864 - 48058915
Alignment:
Q  715 ttaatagcagttttcaccccctaactttcaccaagttctgattttggcccct 766  Q
    |||||||||||||| ||||||||| ||||| ||||||  |||||||||||||    
T  48058864 ttaatagcagttttaaccccctaagtttcaacaagttgagattttggcccct 48058915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 881 - 930
Target Start/End: Original strand, 1450306 - 1450356
Alignment:
Q  881 tgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||||| |||| ||||| ||||||| |||||||||||||||||||||||    
T  1450306 tgccacattagcgaagaccaagtcaaaattggccttgggggccaaaactgc 1450356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 711 - 769
Target Start/End: Original strand, 11373846 - 11373904
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    ||||||||||||||||||| |||||||||||| || |||||  ||| ||| ||||||||    
T  11373846 aggcttaatagcagttttcgccccctaacttttacgaagttgcgatcttgacccctaag 11373904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 786 - 824
Target Start/End: Original strand, 18186514 - 18186552
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctc 824  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  18186514 ccgcctcctaagttttgcaactatagcagttttggcctc 18186552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 786 - 840
Target Start/End: Complemental strand, 20185156 - 20185102
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttg 840  Q
    ||||| |||||||||||||||| || ||||||||||| ||| |||| ||||||||    
T  20185156 ccgcctcctaagttttgcaactgtagcagttttggccccccaaggctaatttttg 20185102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 711 - 765
Target Start/End: Original strand, 28785755 - 28785809
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||| |||||||||||| | ||||||||||||||| |||||  ||||||||||||    
T  28785755 aggcataatagcagtttccgccccctaactttcacgaagttacgattttggcccc 28785809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 765
Target Start/End: Complemental strand, 20505323 - 20505270
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||||||||||| |||| |  |||||  ||||||||||||    
T  20505323 ggcttaatagcagttttcaccccctagcttttatgaagttgcgattttggcccc 20505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 857 - 930
Target Start/End: Original strand, 12719580 - 12719659
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||||||||||||||||     ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  12719580 aaaaataacatgtggcacctcacttggggtgccacatcagcgtagaccgagtcaaaattggtcttggaggccaaaactgc 12719659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 711 - 765
Target Start/End: Original strand, 35383764 - 35383818
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  35383764 aggcttaatagcagttttcgccccctaactttcacgaagttgtgattttggcccc 35383818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 794 - 930
Target Start/End: Original strand, 14449356 - 14449498
Alignment:
Q  794 taagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----gtgccacat 888  Q
    ||||||||||||||||| ||||||||||| ||| | ||||||||| ||| |            |||||||||| ||||||||||||     ||||||| |    
T  14449356 taagttttgcaactataccagttttggccccccaatgccaattttcggtaaaaaaataaaataaaaaataacacgtggcacctcacttatggtgccacgt 14449455  T
Q  889 cagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||| |||||||||||||||||||||||    
T  14449456 cagcgtaaaccgagtcaaaattggccttgggggccaaaactgc 14449498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 794 - 842
Target Start/End: Original strand, 21322790 - 21322838
Alignment:
Q  794 taagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  21322790 taagttttgcaactttaacagttttggcctcccaaggccaatttttggt 21322838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 709 - 761
Target Start/End: Complemental strand, 35393986 - 35393934
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttgg 761  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||||||    
T  35393986 ttaggcttaatagcagttttcaccccctaactttcacgaagttgcgattttgg 35393934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 880 - 930
Target Start/End: Complemental strand, 2016942 - 2016891
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  2016942 gtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgc 2016891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 930
Target Start/End: Original strand, 43074723 - 43074802
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||||||| ||||||||||||     ||||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  43074723 aaaaataacacgtggcacctcacttagggtgccacgtcagcgtagactgagtcaaaattggccttgggggccaaaactgc 43074802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 930
Target Start/End: Complemental strand, 49185748 - 49185669
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||||||||||||||||| |     ||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  49185748 aaaaataacatgtggcacctcgcttagggtgccacgtcagcgtagaccaagtcaaaattggccttgggggccaaaactgc 49185669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 769
Target Start/End: Original strand, 19909172 - 19909230
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    |||||||||||||||||| |||||||||||||| | |||||  ||||||||||||||||    
T  19909172 aggcttaatagcagttttaaccccctaactttctcaaagttgcgattttggcccctaag 19909230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 880 - 927
Target Start/End: Complemental strand, 25909638 - 25909590
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaac 927  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  25909638 gtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaac 25909590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 930
Target Start/End: Complemental strand, 27978842 - 27978791
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  27978842 gtgccacgtcagcgtagaccgagtcaaaattggccttgggggtcaaaactgc 27978791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 930
Target Start/End: Complemental strand, 53312438 - 53312387
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  53312438 gtgccacgtcagcgtagactgagtccaaattggccttgggggccaaaactgc 53312387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 715 - 765
Target Start/End: Original strand, 14449276 - 14449326
Alignment:
Q  715 ttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||| ||||||||||||||| |||||  ||||||||||||    
T  14449276 ttaatagcagttttcgccccctaactttcacgaagttgagattttggcccc 14449326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 765
Target Start/End: Original strand, 25909486 - 25909540
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||| |||||||||||||  | ||||| |||||||||||||    
T  25909486 aggcttaatagcagttttaaccccctaacttttccaaagttgtgattttggcccc 25909540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 769
Target Start/End: Complemental strand, 29697836 - 29697778
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    |||||||||||||||||||||| |||||||||||  |||||  |||||||| |||||||    
T  29697836 aggcttaatagcagttttcacctcctaactttcatgaagttgcgattttggtccctaag 29697778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 765
Target Start/End: Original strand, 43074615 - 43074669
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||| ||||| ||||||||||||||| |||||  ||||||||||||    
T  43074615 aggcttaatagcaattttcgccccctaactttcacgaagttgcgattttggcccc 43074669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 786 - 823
Target Start/End: Original strand, 1420609 - 1420646
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcct 823  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  1420609 ccgccccctaagttttgcaactatatcagttttggcct 1420646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 857 - 928
Target Start/End: Complemental strand, 2837078 - 2837001
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaact 928  Q
    |||||||||| ||||||||||||     ||||||| |||| |||||| |||||||| |||||||||||||||||||||    
T  2837078 aaaaataacacgtggcacctcacttagggtgccacgtcagtgtagactgagtcaaaattggccttgggggccaaaact 2837001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 855 - 930
Target Start/End: Original strand, 20112283 - 20112364
Alignment:
Q  855 ataaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||| ||||||| ||||||||||||     ||||||| ||||||| |||||||||||| ||||| |||||||||||||||||    
T  20112283 ataataataacacgtggcacctcacttagagtgccacgtcagcgttgaccgagtcaaaattggctttgggggccaaaactgc 20112364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 890 - 930
Target Start/End: Original strand, 31553415 - 31553456
Alignment:
Q  890 agcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  31553415 agcgtagaccgagtcaaaattggccttgggggccaaaactgc 31553456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 857 - 928
Target Start/End: Complemental strand, 35393479 - 35393402
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaact 928  Q
    |||||||||||||||||||||||     ||||||||||||| |||| | |||| ||||||| ||||||||||||||||    
T  35393479 aaaaataacatgtggcacctcacttagggtgccacatcagcatagaacaagtcaaaattgggcttgggggccaaaact 35393402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 765
Target Start/End: Original strand, 49185571 - 49185623
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||| |||||||||||||| |||||||  ||||||||||||    
T  49185571 ggcttaatagcagttttaaccccctaactttc-ccaagttgcgattttggcccc 49185623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 760
Target Start/End: Complemental strand, 53312600 - 53312551
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttg 760  Q
    |||||||||| |||||||||||||||||||||||| |||||  |||||||    
T  53312600 aggcttaataacagttttcaccccctaactttcacgaagttgcgattttg 53312551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 709 - 766
Target Start/End: Original strand, 53924744 - 53924801
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccct 766  Q
    ||||||||||||| |||| || ||||||||||||||| ||||| |||||||| |||||    
T  53924744 ttaggcttaatagtagttctcgccccctaactttcacgaagttgtgattttgacccct 53924801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 844
Target Start/End: Original strand, 2654035 - 2654087
Alignment:
Q  792 cctaagttttgcaactataacagttttggcctccccaggccaatttttggtta 844  Q
    |||||||||||||||| || ||||||||||| ||| | |||||||||||||||    
T  2654035 cctaagttttgcaactgtagcagttttggccccccaaagccaatttttggtta 2654087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 786 - 842
Target Start/End: Original strand, 10059758 - 10059814
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||||||||||| || ||||||||| | ||| ||| |||||||||||    
T  10059758 ccgccccctaagttttgcaactgtagcagttttggtcccccaaggtcaatttttggt 10059814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 786 - 842
Target Start/End: Complemental strand, 35393908 - 35393852
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||| |||||| |||| || ||||||||||| ||| |||||||||||||||    
T  35393908 ccgccccctaggttttgtaactgtagcagttttggccccccaaggccaatttttggt 35393852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 2654132 - 2654183
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||| |||||||||||| ||||||| ||||||||||||| |||||||||    
T  2654132 gtgccacgtcagcgtagaccaagtcaaaattggccttgggggtcaaaactgc 2654183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 769
Target Start/End: Complemental strand, 6207492 - 6207433
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    |||||||||||||||||||  |||||||| ||||   ||||| |||||||||||||||||    
T  6207492 taggcttaatagcagttttagccccctaattttcctaaagttgtgattttggcccctaag 6207433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 930
Target Start/End: Original strand, 6637198 - 6637277
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||||||||||||||||     ||||||  |||| |||||||||||| |||||||| ||| |||||||||||||    
T  6637198 aaaaataacatgtggcacctcacttagggtgccatgtcagtgtagaccgagtcaaaattggcattgtgggccaaaactgc 6637277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 10059860 - 10059911
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||| ||| |||||||||||||||| ||||||||| |||||||||||||    
T  10059860 gtgccacgtcaacgtagaccgagtcaaaattggccttgagggccaaaactgc 10059911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 761
Target Start/End: Original strand, 11824186 - 11824237
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttgg 761  Q
    ||||||||||||||||||| ||||||||||||||   ||||| |||||||||    
T  11824186 taggcttaatagcagttttaaccccctaactttcctaaagttgtgattttgg 11824237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 766
Target Start/End: Original strand, 23759560 - 23759615
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccct 766  Q
    ||||||||||| ||||||| ||||||||||||||  |||||  |||||||||||||    
T  23759560 aggcttaatagtagttttcgccccctaactttcataaagttgcgattttggcccct 23759615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 35383922 - 35383973
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||| ||| |||||||||| ||||| |||||||||||||||||||||||    
T  35383922 gtgccacgtcaacgtagaccgaatcaaaattggccttgggggccaaaactgc 35383973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 765
Target Start/End: Complemental strand, 49185870 - 49185820
Alignment:
Q  714 cttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||||||| ||||||||| |||||  ||||||||||||    
T  49185870 cttaatagcagttttcaccccc-aactttcacaaagttgcgattttggcccc 49185820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 859 - 928
Target Start/End: Complemental strand, 54855480 - 54855405
Alignment:
Q  859 aaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaact 928  Q
    |||||||| ||||||||||||     ||||||| ||||||||||||||||| |||||||| |||||| ||||||||    
T  54855480 aaataacaagtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggctttggggaccaaaact 54855405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 709 - 763
Target Start/End: Complemental strand, 1571723 - 1571669
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcc 763  Q
    |||||||||||| ||||||||||  |||||||||||| |||||  ||||||||||    
T  1571723 ttaggcttaataacagttttcacgtcctaactttcacgaagttgcgattttggcc 1571669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 842
Target Start/End: Complemental strand, 2181362 - 2181309
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||| ||||||||||||||| |||||||||||||| ||| ||| |||||||||||    
T  2181362 gccctctaagttttgcaactgtaacagttttggcc-cccaaggacaatttttggt 2181309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 711 - 765
Target Start/End: Complemental strand, 12719761 - 12719707
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||| |||||||||||||| | |||||   |||||||||||    
T  12719761 aggcttaatagcagttttaaccccctaactttcccaaagttgatattttggcccc 12719707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 881 - 930
Target Start/End: Original strand, 12893143 - 12893193
Alignment:
Q  881 tgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||||||||| ||||| ||||||| |||| ||||||||||||||||||    
T  12893143 tgccacatcagcgaagaccaagtcaaaattggtcttgggggccaaaactgc 12893193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 842
Target Start/End: Original strand, 43074665 - 43074719
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||| |||||||||||||| || ||||||||||| ||| | |||||||||||||    
T  43074665 gccccataagttttgcaactgtagcagttttggccccccaatgccaatttttggt 43074719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 881 - 930
Target Start/End: Complemental strand, 55732718 - 55732668
Alignment:
Q  881 tgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||||||||  ||||| ||||||| |||||||||||||||||||||||    
T  55732718 tgccacatcagcaaagaccaagtcaaaattggccttgggggccaaaactgc 55732668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 855 - 930
Target Start/End: Original strand, 4796173 - 4796254
Alignment:
Q  855 ataaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||| ||||||| ||||||||||||     ||||||| ||||||||||||||||| ||||||   |||||||||||||||||    
T  4796173 ataataataacaagtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgattttgggggccaaaactgc 4796254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 881 - 929
Target Start/End: Original strand, 28291817 - 28291866
Alignment:
Q  881 tgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactg 929  Q
    ||||||||||||| ||||| ||||||| ||| ||||||||||||||||||    
T  28291817 tgccacatcagcgaagaccaagtcaaaattgaccttgggggccaaaactg 28291866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 738
Target Start/End: Complemental strand, 30627090 - 30627061
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaa 738  Q
    ||||||||||||||||||||||||||||||    
T  30627090 ttaggcttaatagcagttttcaccccctaa 30627061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 765
Target Start/End: Complemental strand, 50769675 - 50769622
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||| |||||||||| |||||||||||| || |||||  ||||||||||||    
T  50769675 ggcttaaaagcagttttcgccccctaacttttacgaagttgcgattttggcccc 50769622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 711 - 765
Target Start/End: Complemental strand, 12766529 - 12766475
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  12766529 aggcttaatagcagttttcaccccctaactttcacgaagttgcgattttggcccc 12766475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 857 - 928
Target Start/End: Complemental strand, 30349527 - 30349450
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtca-aattggccttgggggccaaaact 928  Q
    |||||||||||||||||||||||     ||||||| ||| |||||||||||||| ||||||||||||||| |||||||    
T  30349527 aaaaataacatgtggcacctcacttagggtgccacgtcaacgtagaccgagtcataattggccttgggggtcaaaact 30349450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 859 - 930
Target Start/End: Complemental strand, 32143435 - 32143358
Alignment:
Q  859 aaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||||| ||||||||     ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  32143435 aaataacatgtgccacctcacttagagtgccacatcaacgtagaccgagtcaaaattggtcttgggggccaaaactgc 32143358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 709 - 760
Target Start/End: Complemental strand, 28011441 - 28011390
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttg 760  Q
    |||| |||||||||||||||||||||||||||||||| |||||  |||||||    
T  28011441 ttagccttaatagcagttttcaccccctaactttcacgaagttgcgattttg 28011390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 881 - 930
Target Start/End: Original strand, 26311568 - 26311618
Alignment:
Q  881 tgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  26311568 tgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgc 26311618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 712 - 762
Target Start/End: Complemental strand, 33401367 - 33401317
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggc 762  Q
    ||||||||||||||||||||||||||||||| || |||||  |||||||||    
T  33401367 ggcttaatagcagttttcaccccctaacttttacgaagttacgattttggc 33401317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 788 - 841
Target Start/End: Original strand, 10727267 - 10727320
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttgg 841  Q
    |||| ||||||||||||||| || ||||||||||| ||| ||||||||||||||    
T  10727267 gccctctaagttttgcaactgtagcagttttggccccccaaggccaatttttgg 10727320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 791 - 842
Target Start/End: Complemental strand, 1377442 - 1377390
Alignment:
Q  791 ccctaagttttgcaactataacagttttggcctcccca-ggccaatttttggt 842  Q
    ||||||||||||||||| |||||||||||||| |||||  |||||||||||||    
T  1377442 ccctaagttttgcaactgtaacagttttggcccccccatagccaatttttggt 1377390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 791 - 842
Target Start/End: Complemental strand, 1385190 - 1385138
Alignment:
Q  791 ccctaagttttgcaactataacagttttggcctcccca-ggccaatttttggt 842  Q
    ||||||||||||||||| |||||||||||||| |||||  |||||||||||||    
T  1385190 ccctaagttttgcaactgtaacagttttggcccccccatagccaatttttggt 1385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 790 - 842
Target Start/End: Complemental strand, 33401290 - 33401238
Alignment:
Q  790 cccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||||||| || ||||||||||| ||| || ||||||||||||    
T  33401290 cccctaagttttgcaactgtagcagttttggccccccaagaccaatttttggt 33401238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 760
Target Start/End: Original strand, 238927 - 238978
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttg 760  Q
    ||||||||||||||||||||| |||||||| |||||| |||||  |||||||    
T  238927 ttaggcttaatagcagttttcgccccctaattttcacgaagttgcgattttg 238978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 239108 - 239159
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||| |||||||||||||| ||||| ||||||||||| |||||||||||    
T  239108 gtgccacgtcagcgtagaccgaatcaaaattggccttgggtgccaaaactgc 239159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 765
Target Start/End: Original strand, 3579593 - 3579648
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||||  ||| |||||||||| |||||  ||||||||||||    
T  3579593 taggcttaatagcagttttcgtcccttaactttcacgaagttgcgattttggcccc 3579648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Complemental strand, 33399935 - 33399884
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  33399935 gtgccacgtcagcgtagaccgagtcaaaattgaccttaggggccaaaactgc 33399884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 769
Target Start/End: Complemental strand, 1377517 - 1377463
Alignment:
Q  715 ttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    |||||| ||||||||  |||||||||||||| |||||  ||||||||||||||||    
T  1377517 ttaatatcagttttcgtcccctaactttcacgaagttgcgattttggcccctaag 1377463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 769
Target Start/End: Complemental strand, 1385265 - 1385211
Alignment:
Q  715 ttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    |||||| ||||||||  |||||||||||||| |||||  ||||||||||||||||    
T  1385265 ttaatatcagttttcgtcccctaactttcacgaagttgcgattttggcccctaag 1385211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 877 - 930
Target Start/End: Original strand, 2853575 - 2853629
Alignment:
Q  877 cacgtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||| ||| ||||||||||  |||||||| |||||||||||||||||||||||    
T  2853575 cacgtggcacgtcagcgtagaatgagtcaaaattggccttgggggccaaaactgc 2853629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 786 - 840
Target Start/End: Complemental strand, 12766454 - 12766401
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttg 840  Q
    ||||||| |||||||||||||| || ||||||||||| ||| |||||||||||||    
T  12766454 ccgccccttaagttttgcaactgtagcagttttggcc-cccaaggccaatttttg 12766401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 857 - 930
Target Start/End: Complemental strand, 17532429 - 17532351
Alignment:
Q  857 aaaaataacatgtggcacctcac----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    |||||||||||||||||||||||    ||||||  ||| ||||||||||||| ||| |||| || ||||||||||||||    
T  17532429 aaaaataacatgtggcacctcacttgggtgccatgtcatcgtagaccgagtcaaaactggctttaggggccaaaactgc 17532351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 37813254 - 37813305
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  37813254 gtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgc 37813305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 883 - 930
Target Start/End: Original strand, 29044713 - 29044761
Alignment:
Q  883 ccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  29044713 ccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgc 29044761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 857 - 928
Target Start/End: Original strand, 44269259 - 44269331
Alignment:
Q  857 aaaaataacatgtggcacctcacgtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaact 928  Q
    |||||||||||||| |||||   |||||||||||||||||  |||||| |||||||| |||||||||||||||    
T  44269259 aaaaataacatgtgacacctagggtgccacatcagcgtaggtcgagtcaaaattggcattgggggccaaaact 44269331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 788 - 929
Target Start/End: Complemental strand, 45177445 - 45177302
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcac-----gtg 882  Q
    ||||| |||||||||||||| ||  |||||||||||||| | ||||||||||||| |          |||||||||||||||| ||||||||     |||    
T  45177445 gccccataagttttgcaactgtagtagttttggcctcccaaagccaatttttggtaaaaaaga----ataaaaataacatgtgacacctcacttagggtg 45177350  T
Q  883 ccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactg 929  Q
    |||| |||| |||||||||||| ||||| |||||| ||||||||||||    
T  45177349 ccacgtcagtgtagaccgagtcaaaattagccttgagggccaaaactg 45177302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 786 - 837
Target Start/End: Original strand, 41487275 - 41487326
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaattt 837  Q
    |||||||||||||||||||||| || ||||||||||| ||| ||||||||||    
T  41487275 ccgccccctaagttttgcaactgtagcagttttggccgcccaaggccaattt 41487326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 765
Target Start/End: Original strand, 17070906 - 17070960
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||| |||| |||||||||| |||||  ||||||||||||    
T  17070906 aggcttaatagcagttttcgccccttaactttcacgaagttgcgattttggcccc 17070960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 765
Target Start/End: Complemental strand, 17577366 - 17577312
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||| |||| |||||||||| |||||  ||||||||||||    
T  17577366 aggcttaatagcagttttcgccccttaactttcacgaagttgcgattttggcccc 17577312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 842
Target Start/End: Original strand, 30539065 - 30539119
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||| ||||| || ||||||||||| ||| |||||||||||||||    
T  30539065 gccccctaagttttacaactgtagcagttttggccccccaaggccaatttttggt 30539119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 765
Target Start/End: Original strand, 37813161 - 37813215
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||||| ||||||||||||||| || ||  ||||||||||||    
T  37813161 aggcttaatagcagttttcgccccctaactttcacaaatttacgattttggcccc 37813215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 751
Target Start/End: Original strand, 16982624 - 16982665
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagtt 751  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  16982624 taggcttgatagcagttttcaccccctaactttcacgaagtt 16982665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 711 - 751
Target Start/End: Complemental strand, 521757 - 521717
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagtt 751  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  521757 aggcttaatagcagttttcaccccctaattttcacgaagtt 521717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 710 - 769
Target Start/End: Original strand, 23702121 - 23702181
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttgg-cccctaag 769  Q
    |||||||||||||||||||| |||| |||||||||| |||||  |||||||| ||||||||    
T  23702121 taggcttaatagcagttttcgccccttaactttcacaaagttacgattttggtcccctaag 23702181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 794 - 842
Target Start/End: Original strand, 44101372 - 44101420
Alignment:
Q  794 taagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||| || ||||||||||||||| || ||||||||||||    
T  44101372 taagttttgcaactttagcagttttggcctcccaagaccaatttttggt 44101420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 8952725 - 8952776
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||||||||||| ||||||||| ||||||| || |||||||||||||||    
T  8952725 gtgccacatcagcgttgaccgagtcaaaattggtctagggggccaaaactgc 8952776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 41487346 - 41487421
Alignment:
Q  858 aaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaac 927  Q
    |||||||||| |||||||||||     ||| ||| ||||||||||||||||| ||||||| |||||||||||||||    
T  41487346 aaaataacatatggcacctcacttagcgtgtcacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaac 41487421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 881 - 930
Target Start/End: Complemental strand, 14880485 - 14880435
Alignment:
Q  881 tgccacatcagcgtagaccgagtcaaatt-ggccttgggggccaaaactgc 930  Q
    |||||| ||||| |||||||||||||| | |||||||||||||||||||||    
T  14880485 tgccacgtcagcatagaccgagtcaaaatcggccttgggggccaaaactgc 14880435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 842
Target Start/End: Original strand, 35213105 - 35213159
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||| |||||||||||||| |||||||||||||| ||| |  ||||||||||||    
T  35213105 gccccttaagttttgcaactgtaacagttttggccccccaataccaatttttggt 35213159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 765
Target Start/End: Complemental strand, 36688311 - 36688258
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    ||||||||||||||||| |||||||||||||  | ||||| |||||||| ||||    
T  36688311 ggcttaatagcagttttaaccccctaactttttcaaagttgtgattttgacccc 36688258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 766
Target Start/End: Original strand, 39889769 - 39889826
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccct 766  Q
    ||||||||||||||||||||| || | |||||||||| |||||   ||||||||||||    
T  39889769 ttaggcttaatagcagttttcgcctcttaactttcacgaagttgcaattttggcccct 39889826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 857 - 928
Target Start/End: Complemental strand, 14978975 - 14978898
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaact 928  Q
    |||||||||||||||||||||||     |||||||||||||||||||| | || ||||||||||| ||||||||||||    
T  14978975 aaaaataacatgtggcacctcacttagggtgccacatcagcgtagaccaattcaaaattggcctttggggccaaaact 14978898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 711 - 764
Target Start/End: Original strand, 39642199 - 39642252
Alignment:
Q  711 aggcttaatagcagttttcaccccctaactttcaccaagttctgattttggccc 764  Q
    ||||||||||||||||||| ||||||||||||||| |||||  |||||||||||    
T  39642199 aggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggccc 39642252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 930
Target Start/End: Complemental strand, 3377747 - 3377601
Alignment:
Q  790 cccctaagttttgcaactataacagttttggcctccccaggccaatttttggttannnnnnnnnnataaaaataacatgtggcacctcacgt-----gcc 884  Q
    |||||||||||||||||| || |||||||||||  || ||||||||||||||| |            ||||||||||| || |||||||| |     | |    
T  3377747 cccctaagttttgcaactttagcagttttggccctccaaggccaatttttggtaaaaagataaaataaaaaataacatatgacacctcacttagggcgtc 3377648  T
Q  885 acatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    || |||||||||||||||||||| |||||||||||||||||||||||    
T  3377647 acgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgc 3377601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 842
Target Start/End: Original strand, 12960920 - 12960976
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    ||||| ||||||||||||||||||| ||||||||||| ||| |||| ||||||||||    
T  12960920 ccgcctcctaagttttgcaactatagcagttttggccccccaaggctaatttttggt 12960976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 880 - 923
Target Start/End: Original strand, 23480077 - 23480121
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggcca 923  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  23480077 gtgccacatcagcgtagaccgagtcaaaattggccttgggggcca 23480121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 769
Target Start/End: Original strand, 25085396 - 25085456
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccctaag 769  Q
    ||||||||||||||||||||| ||||||||||||||  |||||  ||||||| ||||||||    
T  25085396 ttaggcttaatagcagttttcgccccctaactttcataaagttgcgattttgacccctaag 25085456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 14190705 - 14190756
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  14190705 gtgccacatcagcgtagaccgagtcaaaattggcattggaggccaaaactgc 14190756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 930
Target Start/End: Original strand, 16874666 - 16874717
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  16874666 gtgccacgtcagcgtagaccgagtcaaaattggccttgggagccaaaactgc 16874717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 714 - 765
Target Start/End: Original strand, 23891662 - 23891713
Alignment:
Q  714 cttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||| | ||||||||||||| ||||| |||||||||||||    
T  23891662 cttaatagcagttttcgctccctaactttcacgaagttgtgattttggcccc 23891713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 765
Target Start/End: Complemental strand, 3377825 - 3377772
Alignment:
Q  712 ggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||  ||||||||||||| | ||||| |||||||||||||    
T  3377825 ggcttaatagcagttttagccccctaactttcccaaagttgtgattttggcccc 3377772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 857 - 927
Target Start/End: Complemental strand, 23220745 - 23220669
Alignment:
Q  857 aaaaataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaac 927  Q
    ||||| |||||||||||||||||     ||||||| |||||||||||||| || ||||||| |||||||||||||||    
T  23220745 aaaaaaaacatgtggcacctcacttagggtgccacgtcagcgtagaccgaatcaaaattggtcttgggggccaaaac 23220669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 786 - 842
Target Start/End: Original strand, 39642275 - 39642331
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcctccccaggccaatttttggt 842  Q
    |||||||||||||| ||||| | || ||||||||||| ||| |||||||||||||||    
T  39642275 ccgccccctaagttctgcaattgtagcagttttggccccccaaggccaatttttggt 39642331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 860 - 930
Target Start/End: Original strand, 50226529 - 50226605
Alignment:
Q  860 aataacatgtggcacctcac-----gtgccacatcagcgtagaccgagtcaa-attggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||||     ||||||| ||||||||||||||||||| ||| ||||| ||||||||||||||    
T  50226529 aataacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaatattagccttcggggccaaaactgc 50226605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 888 - 930
Target Start/End: Original strand, 41997812 - 41997855
Alignment:
Q  888 tcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  41997812 tcagcgtagaccgagtcaaaattggccttggaggccaaaactgc 41997855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 786 - 842
Target Start/End: Complemental strand, 48319645 - 48319587
Alignment:
Q  786 ccgccccctaagttttgcaactataacagttttggcct--ccccaggccaatttttggt 842  Q
    |||||||||||||||||||||| || ||||||||||||  | | |||||||||||||||    
T  48319645 ccgccccctaagttttgcaactgtagcagttttggccttactcaaggccaatttttggt 48319587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 709 - 751
Target Start/End: Complemental strand, 25486529 - 25486487
Alignment:
Q  709 ttaggcttaatagcagttttcaccccctaactttcaccaagtt 751  Q
    ||||||||||||||||||||  ||||||||||||||| |||||    
T  25486529 ttaggcttaatagcagtttttgccccctaactttcacgaagtt 25486487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 838
Target Start/End: Complemental strand, 45739173 - 45739123
Alignment:
Q  788 gccccctaagttttgcaactataacagttttggcctccccaggccaatttt 838  Q
    ||||| |||||||||||||| || ||||||||||| ||| |||||||||||    
T  45739173 gccccataagttttgcaactgtagcagttttggccccccaaggccaatttt 45739123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 763
Target Start/End: Complemental strand, 18632651 - 18632602
Alignment:
Q  714 cttaatagcagttttcaccccctaactttcaccaagttctgattttggcc 763  Q
    |||||||||||||||| |||||||||||| || |||||  ||||||||||    
T  18632651 cttaatagcagttttcgccccctaacttttacgaagttgcgattttggcc 18632602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 710 - 765
Target Start/End: Original strand, 1469 - 1524
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||||  ||||||||||||||| |||||  ||||||||||||    
T  1469 taggcttaatagcagttttagccccctaactttcacaaagttgagattttggcccc 1524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 765
Target Start/End: Original strand, 3637 - 3692
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||||  ||||||||||||| | |||||  ||||||||||||    
T  3637 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 765
Target Start/End: Original strand, 3637 - 3692
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttggcccc 765  Q
    |||||||||||||||||||  ||||||||||||| | |||||  ||||||||||||    
T  3637 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 930
Target Start/End: Complemental strand, 77012 - 76962
Alignment:
Q  880 gtgccacatcagcgtagaccgagtc-aaattggccttgggggccaaaactgc 930  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  77012 gtgccacgtcagcgtagaccgagtcaaaattggccttggggg-caaaactgc 76962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 888 - 930
Target Start/End: Complemental strand, 145496 - 145453
Alignment:
Q  888 tcagcgtagaccgagtcaaa-ttggccttgggggccaaaactgc 930  Q
    ||||| |||||||||||||| |||||||||||||||||||||||    
T  145496 tcagcctagaccgagtcaaaattggccttgggggccaaaactgc 145453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 9653 - 9603
Alignment:
Q  710 taggcttaatagcagttttcaccccctaactttcaccaagttctgattttg 760  Q
    |||| |||||||||||||||||| |||||||||||| |||||  |||||||    
T  9653 taggtttaatagcagttttcacctcctaactttcacgaagttgcgattttg 9603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 880 - 929
Target Start/End: Original strand, 46238 - 46288
Alignment:
Q  880 gtgccacatcagcgtagaccgagtcaaa-ttggccttgggggccaaaactg 929  Q
    ||||||| ||||||||||| |||||||| ||| ||||||||||||||||||    
T  46238 gtgccacgtcagcgtagactgagtcaaaattgaccttgggggccaaaactg 46288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 888 - 928
Target Start/End: Original strand, 19200 - 19241
Alignment:
Q  888 tcagcgtagaccgagtcaaa-ttggccttgggggccaaaact 928  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  19200 tcagcgtagaccgagccaaaattggccttgggggccaaaact 19241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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