View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5498-Insertion-4 (Length: 890)
Name: NF5498-Insertion-4
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498-Insertion-4 |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 31093208 - 31093302
Alignment:
| Q |
447 |
ttaaaatgctttcccggaactggatgagatcaaaatcatcggggtcaggatatgcaatatcacattagtggactaaccctctagcttgtttagga |
541 |
Q |
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| T |
31093208 |
ttaaaatgctttcccggaactggatgagatcaaaatcattgggatatggatatgcaatatcacattagtggactaaccctctagcttgtttagga |
31093302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 721 - 855
Target Start/End: Complemental strand, 31074093 - 31073966
Alignment:
| Q |
721 |
ttttgtgcctagtgaaaaaatgtatgatggagtcccataacaccacttagttcatacagttttgtcatgtaatgtactatgacctaaataatttaaccac |
820 |
Q |
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| T |
31074093 |
ttttgtgggtagtgaagtaatgtatgatggagtcccataacaccacttagttcattcaattttgtcttataatgtactatggccaaaataatttaaccac |
31073994 |
T |
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| Q |
821 |
cctcttcccccttcatcatactttaaattattcca |
855 |
Q |
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| T |
31073993 |
cct-------cttcatcatactttaaattattcca |
31073966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 31025770 - 31025721
Alignment:
| Q |
8 |
ttttgtatatataatttaagcattagttgtttatcctttggtagtggatt |
57 |
Q |
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| T |
31025770 |
ttttgtatatataatttaagcattagttgtttatcctttggtactggatt |
31025721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 393
Target Start/End: Complemental strand, 31034205 - 31034076
Alignment:
| Q |
263 |
tatagcataacaattgtagttctcatcttgttctttctcttgaataatccaaggtaagaaagatacaaaattgggtataagaatgatttgaattgcttgt |
362 |
Q |
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| T |
31034205 |
tataccatatcaattgtagttctcatctcattctttctccggaatagtctaaggtaggaaagagacagaatt-gatataagaacaatttgacttgcttgt |
31034107 |
T |
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| Q |
363 |
ctatggtgtatttggaaggctaggaatgcga |
393 |
Q |
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| T |
31034106 |
ctatggattaatgggaaggcaaagaatgcga |
31034076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 31072485 - 31072428
Alignment:
| Q |
22 |
tttaagcattagttgtttatcctttggtagtggatttagaacatgattcaaaggttaact |
81 |
Q |
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| T |
31072485 |
tttaagcataacttgtttatcttttggtagtggatttggaacatgatt--aaggttaact |
31072428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 263 - 542
Target Start/End: Original strand, 30798 - 31069
Alignment:
| Q |
263 |
tatagcataacaattgtagttctcatcttgttctttctcttgaataatccaaggtaagaaagatacaaaattgggtataagaatgatttgaattgcttgt |
362 |
Q |
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| T |
30798 |
tataccatatcaattgtagttctcatctcattctttctccggaatagtctaaggtaggaaagatacataatt-ggtataagaacaatttgacttgcttgt |
30896 |
T |
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| Q |
363 |
ctatggtgtatttggaaggctaggaatgcgagnnnnnnnntcacgatataagtgtttcgactgatactattttagaactgcattttaaaatgctttcccg |
462 |
Q |
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| T |
30897 |
ctatggattattgggaaggctaagaatgcga--aaaaaattcaggataaaaatgtttcgaccgatactatttcagaaaag-----gtaagtgctttcctg |
30989 |
T |
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| Q |
463 |
gaactggatgagatcaaaatcatcggggtcaggatatgcaatatcacattagtggactaaccctctagcttgtttaggag |
542 |
Q |
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| T |
30990 |
aaactggataaggtcaaaatcatcgaggtttggatatgcaatatcaaagttgtggactaaccctctaccttttttaggag |
31069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 30421 - 30459
Alignment:
| Q |
42 |
cctttggtagtggatttagaacatgattcaaaggttaac |
80 |
Q |
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| T |
30421 |
cctttggtagtggatttagaacatgatttgaaggttaac |
30459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 358 - 542
Target Start/End: Original strand, 1856 - 2020
Alignment:
| Q |
358 |
cttgtctatggtgtatttggaaggctaggaatgcgagnnnnnnnntcacgatataagtgtttcgactgatactattttagaactgcattttaaaatgctt |
457 |
Q |
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| T |
1856 |
cttgtctatagtgtatttggaaggctaggaatgcga--aaaaaattcacgatataagtgtttcgactgatactatttcagaacagg---ttaaaatgctt |
1950 |
T |
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| Q |
458 |
tcccggaactggatgagatcaaaatcatcggggtcaggatatgcaatatcacattagtggactaaccctctagcttgtttaggag |
542 |
Q |
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| T |
1951 |
tcctggaaccggatgagatct---------------ggatatgcaatatcacattagtggactaaccctctagcttgtttaggag |
2020 |
T |
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