View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5498-Insertion-6 (Length: 508)
Name: NF5498-Insertion-6
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498-Insertion-6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 508
Target Start/End: Complemental strand, 47807753 - 47807259
Alignment:
| Q |
8 |
acacggatttactgtcaaactgctacaagaataagtagtaagaatgttattttggatcacactaattttcactattttcaattgctgtttcagataatcg |
107 |
Q |
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| T |
47807753 |
acacggttttactgtcaaactgctacaagaataagtagtaagaatgttattttggatcacactaattttcactattttcaattgctgtttcagataagcg |
47807654 |
T |
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| Q |
108 |
tccttcgaaagctaaaacattttttcttcatgtatcatacaacttacaacagttattttcggtaacaagccagtgttcactttttgccgcaaatcctcgc |
207 |
Q |
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| T |
47807653 |
tccttcgaaagctaaaacattttttctacatgtatcatacaacttacaacagttattttcggaaacaagccagtattcactttttgccgcaaatcctcgc |
47807554 |
T |
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| Q |
208 |
attcttgctgtcagtaaaacaagacaattaatatgtattccaggaaaatatagtttcactgctaattatttagatgtacctctgtgaaatcatcatcaga |
307 |
Q |
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| T |
47807553 |
attcttgctgtcagtaaaacaagacaattaatatgtattccaggaaaatatagtttcactgcaaattatttagatgtacctctgtgaaatcatcatcaga |
47807454 |
T |
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| Q |
308 |
gagctcagaaatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaa |
407 |
Q |
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| T |
47807453 |
gagctcagaaatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaa |
47807354 |
T |
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| Q |
408 |
atgatcaatcatttaaagtacatacatagaaccaaatattgagaaatataaatttaaagtagtgttaaaaagctagcaagatctatatgcaatttattat |
507 |
Q |
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| T |
47807353 |
atgatcaatcatttaaagtacatacatagaaccaaatattgagaaata------taaagtagcgttaaaaagctagcaagatctatatgcaatttattat |
47807260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 137 - 508
Target Start/End: Complemental strand, 47805063 - 47804697
Alignment:
| Q |
137 |
atgtatcatacaacttacaacagttattttcggtaacaagccagtgttcactttttgccgcaaatcctcgcattcttgctgtcagtaaaacaagacaatt |
236 |
Q |
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| T |
47805063 |
atgtatcatacaacttacaacagttaattttgggagcaatccagttttcacttttttccgtaaatcctcacaatcttgctgtaagtaaaacaacacaatt |
47804964 |
T |
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| Q |
237 |
aatatgtattccaggaaaata-tagtttcactgctaattatttagatgtacctctgtgaaatcatcatcagagagctcagaaatggaaatagctttaggc |
335 |
Q |
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| T |
47804963 |
aatacgtattccaggataataatattttcactgcaaattatttacacgtacctctgtgaaatcttcatcggagagctcagagatggaaatagctttaggc |
47804864 |
T |
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| Q |
336 |
atgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaaatgatcaatcatttaaagtacatacata |
435 |
Q |
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| T |
47804863 |
atgaaggaaacttgcaagagtattccattagacatttgatcatgttgaacacctaaaagttaaacaagagaaatgatcaatcatttaaagtacatacata |
47804764 |
T |
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| Q |
436 |
gaaccaaatattgagaaatataaatttaaagtagtgttaaaaagctagcaagatctatatgcaatttattata |
508 |
Q |
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| T |
47804763 |
gaaccaaatattgagaaata------taaagtagcgttaaaaagctagcaagatctatatgcaatttattata |
47804697 |
T |
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