View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5498_high_2 (Length: 274)
Name: NF5498_high_2
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 2804353 - 2804606
Alignment:
| Q |
1 |
ttaaaaggattgaatagaacactgtacataaataatttatctgagagacttactgatgttcttttgaccattttcacgacacatgaagaaaacaaattca |
100 |
Q |
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| T |
2804353 |
ttaaaaggattgaatagaacaaagtacataaataatttatctgagatacttactgatgttcttttgaccattttcacgacacatgaagaaaacaaattca |
2804452 |
T |
|
| Q |
101 |
tagaaccgagaaaactctgaaaaggttgcctaggaaagagaaacacaggaagtacataagtgagaggaaac-nnnnnnntgaatgcaataactctttgta |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
2804453 |
tagaaccgagaaaactctgaaaaggttgcctaggaaagagaaacacaggaagtacataagtgagaggaaacaaaaaaaatgaatgcaataactctctgta |
2804552 |
T |
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| Q |
200 |
tcatgctagatattttttcgtctctctcctcataatatagagaatgcacaacctctc |
256 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2804553 |
tcatgctagatattttttcgtctct---ctcataatatagagaatgcacaacctctc |
2804606 |
T |
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