View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5498_high_6 (Length: 246)
Name: NF5498_high_6
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 10327714 - 10327497
Alignment:
| Q |
11 |
caaaggcactgcaacaacaacgctctttttcataggtgctttcacctgcggccacttttaagagtgctctacttccttaaccaacaatttgaggggataa |
110 |
Q |
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| T |
10327714 |
caaaggcactgcaacaacaacgctctttttcataggtgctttcacctgcggccacttttaagagtgctctacttccttaatcaacaattcgaggggacaa |
10327615 |
T |
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| Q |
111 |
tttatcaataaaaattacagaggatatgtatgccgtgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggtgacaagttg |
210 |
Q |
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| T |
10327614 |
tttatcaataaaattt--agaggatatgcatgccatgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggtgacaagttg |
10327517 |
T |
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| Q |
211 |
aacacaactaaagaaataac |
230 |
Q |
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| T |
10327516 |
tacacaactaaagaaataac |
10327497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 23645498 - 23645694
Alignment:
| Q |
11 |
caaaggcactgcaacaacaacgctctttttcataggtgctttcacctgcggccacttttaagagtgctctacttccttaaccaacaatttgaggggataa |
110 |
Q |
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| T |
23645498 |
caaaggcactgcaacaacaacgctcttttgcacaagtgctttcgcctgcggccgtggttaagagtgtatttcttcctcaaccgacaattcgaggggataa |
23645597 |
T |
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| Q |
111 |
tttatcaataaaaattacagaggatatgtatgccgtgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggtgacaag |
207 |
Q |
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| T |
23645598 |
tttatcaataaaaatcacagagaatgtctatgtcacgcggttaaagaaatgcaagcatcatatgcacgaccagctattcatgaacaagggtgacaag |
23645694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 23869913 - 23869694
Alignment:
| Q |
11 |
caaaggcactgcaacaacaacgctctttttcataggtgctttcacctgcggccacttttaagagtgctctacttccttaaccaacaatttgaggggataa |
110 |
Q |
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||||||||| |||||||||| || ||||| || | |||||||| |||| ||| | ||||||| || | |||||| |||| ||| || ||||||||| |
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| T |
23869913 |
caaaggcaccgcaacaacaaagcacttttgcacaagtgctttctcctgtggcagcggttaagagggcacctcttcctcaaccgacagttcaaggggataa |
23869814 |
T |
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| Q |
111 |
tttatcaataaaaattacagaggatatgtatgccgtgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggtgacaagttg |
210 |
Q |
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| T |
23869813 |
tttatcaataaaaattacagagaatgtctatctcatggggttagataaatcaaagtatcatatgcacgaccggatattcttgaacaggggtgacaagccg |
23869714 |
T |
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| Q |
211 |
aacacaactaaagaaataac |
230 |
Q |
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| T |
23869713 |
tacacagctaaataaataac |
23869694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 17704815 - 17704899
Alignment:
| Q |
146 |
tgggattagagaaatgcaagcatcatatgcatgaccggctattcttgtacaagggtgacaagttgaacacaactaaagaaataac |
230 |
Q |
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| T |
17704815 |
tggggttagagaaatgcaagcataatatgcacggccgactattcttgaacaagggtgacaagccgtacacaactaaagaaataac |
17704899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 28667256 - 28667380
Alignment:
| Q |
82 |
cttccttaaccaacaatttgaggggataatttatcaataaaaattacagaggatatgtatgccgtgggattagagaaatgcaagcatcatatgcatgacc |
181 |
Q |
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| T |
28667256 |
cttcctcaaccgacaattcgtggggattatctgtcaataaaaattaccgacgaagtgtatgccaaaggattagagaaatgcaagcaccacatgcacgaca |
28667355 |
T |
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| Q |
182 |
ggctattcttgtacaagggtgacaa |
206 |
Q |
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|| | |||||| ||||||| ||||| |
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| T |
28667356 |
ggttgttcttgaacaagggcgacaa |
28667380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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