View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5498_low_1 (Length: 709)
Name: NF5498_low_1
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498_low_1 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 609; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 17 - 709
Target Start/End: Original strand, 40181377 - 40182076
Alignment:
| Q |
17 |
atgagtttatttagaatccttgcgttaagaaagtcagtttcatagcggccaattttcttaagcatgtcccacagaaaa-aatatgtatttcttccttagt |
115 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40181377 |
atgagtttattgagaatccttgcattaagaaagtcagtttcatagcggccaatatacttaagcatgtcccacagaaaaaaatatgtatttcttccttagt |
40181476 |
T |
|
| Q |
116 |
ttaacattaaaatcatagtgaacagcagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatct |
215 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181477 |
ttaacattgaaatcatagtgaacagtagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatct |
40181576 |
T |
|
| Q |
216 |
ttatgaagtatataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatg |
315 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
40181577 |
ttatgaagtatataagattctgaggtggaacttctagggtttcagctaatttagtttgacaagaggtttcaataacactgattagaaagtgttgttgatg |
40181676 |
T |
|
| Q |
316 |
atgttgaactagattggtcaagtctttgttgtacctgcgcccacgtgtagaagcattactaagaagactcatcactttctggaaatctttggaggcggtg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40181677 |
atgttgaactagattggtcaagtctttgttgtacctgcgcccacgtgtagaagcattactaagaagactcatcactttctgtaaatctttggaggcggtg |
40181776 |
T |
|
| Q |
416 |
atgacgttgtcgtcgttgtcacgatatgtaaacgagggattacatgaagtggatgatgatgatgattgacttagaaagttggagaaaatgaccttgttag |
515 |
Q |
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| T |
40181777 |
atgacgttgtcgtcgttgtcacgatatgtaaacgagggattacatgaagtggatgatgatgatgattgacttagaaagttggagaaaatgaccttgttag |
40181876 |
T |
|
| Q |
516 |
ggttaggaattcttcgtgtggatgatgatgaggag------gaagaagaagaagtgatgtagttcctgccatatcttgctgcaaacgacacccacatctt |
609 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181877 |
ggttaggaattcttcgtgtggatgatgataaggaggaagaagaagaagaagaagtgatgtagttcctgccatatcttgctgcaaacgacacccacatctg |
40181976 |
T |
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| Q |
610 |
cttatatatagtttgcgagtgagaatcggttggagacaaacggcacacacacggctaggtttaggtttactgagcgattgagaatgttgaactctaacct |
709 |
Q |
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| T |
40181977 |
catatatatagtttgcgagtgagaatcggttggagacagacggcacacacacggctaggtttaggtttactgagcgattgagaatgttgaactctaacct |
40182076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 40180938 - 40180999
Alignment:
| Q |
254 |
gtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatg |
315 |
Q |
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| T |
40180938 |
gtttcaacaaatttagtttgacaagaggttttaataactttgagtaaaaaatgttgttgatg |
40180999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 38605904 - 38605960
Alignment:
| Q |
63 |
ggccaattttcttaagcatgtcccacagaaaaaatatgtatttcttccttagtttaa |
119 |
Q |
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| T |
38605904 |
ggccaatattcttaagcaaatcccacagaaaaagtatgtcattcttccttagtttaa |
38605960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 402
Target Start/End: Original strand, 38606229 - 38606264
Alignment:
| Q |
367 |
agcattactaagaagactcatcactttctggaaatc |
402 |
Q |
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| T |
38606229 |
agcattactaagaagactcatcactttatggaaatc |
38606264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 38606068 - 38606137
Alignment:
| Q |
227 |
ataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga |
296 |
Q |
| |
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||||| || ||||||| || ||| |||||| | ||||||| |||||||||||||||| ||||||||||| |
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| T |
38606068 |
ataaggttgtgaggtgatacctttggggtttgaactaatttggtttgacaagaggtttgaataactttga |
38606137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 41885674 - 41885617
Alignment:
| Q |
227 |
ataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggttt |
284 |
Q |
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|||| ||| ||||||||||| ||| |||||| | |||||||| ||||||||||||||| |
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| T |
41885674 |
ataaaattatgaggtggaacatttggggtttgaactaatttaatttgacaagaggttt |
41885617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 135 - 321
Target Start/End: Complemental strand, 44459430 - 44459244
Alignment:
| Q |
135 |
gaacagcagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatctttatgaagtatataagatt |
234 |
Q |
| |
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|||||| || || ||||||| |||||| |||||| |||| ||||| |||||| ||||| |||| |||||||| || |||||| |||| |||||||| |
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| T |
44459430 |
gaacagtagagcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagatt |
44459331 |
T |
|
| Q |
235 |
ctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatgatgttg |
321 |
Q |
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|||||| |||| ||| ||| |||| | |||||||||||||||||||||||||||||||| | | ||||| |||||| |||||||| |
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| T |
44459330 |
atgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgttgatgttg |
44459244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 135 - 321
Target Start/End: Complemental strand, 44466963 - 44466777
Alignment:
| Q |
135 |
gaacagcagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatctttatgaagtatataagatt |
234 |
Q |
| |
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|||||| || || ||||||| |||||| |||||| |||| ||||| |||||| ||||| |||| |||||||| || |||||| |||| |||||||| |
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| T |
44466963 |
gaacagtagagcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagatt |
44466864 |
T |
|
| Q |
235 |
ctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatgatgttg |
321 |
Q |
| |
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|||||| |||| ||| ||| |||| | |||||||||||||||||||||||||||||||| | | ||||| |||||| |||||||| |
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| T |
44466863 |
atgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgttgatgttg |
44466777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 34502619 - 34502688
Alignment:
| Q |
227 |
ataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga |
296 |
Q |
| |
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|||||||| ||||| | ||| ||| ||||||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
34502619 |
ataagattatgaggcgaaacctttggggtttcagttaatttagtttgagaagaggcttcaataactttga |
34502688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 44460245 - 44460150
Alignment:
| Q |
19 |
gagtttatttagaatccttgcgttaagaaagtcagtttcatagcggccaattttcttaagcatgtcccacagaaaaaatatgtatttcttccttag |
114 |
Q |
| |
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||||| ||| |||||||| | | |||||| |||||| | |||| ||||||| | |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
44460245 |
gagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
44460150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 44467778 - 44467683
Alignment:
| Q |
19 |
gagtttatttagaatccttgcgttaagaaagtcagtttcatagcggccaattttcttaagcatgtcccacagaaaaaatatgtatttcttccttag |
114 |
Q |
| |
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||||| ||| |||||||| | | |||||| |||||| | |||| ||||||| | |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
44467778 |
gagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
44467683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 402
Target Start/End: Complemental strand, 44459176 - 44459145
Alignment:
| Q |
371 |
ttactaagaagactcatcactttctggaaatc |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
44459176 |
ttactaagaagactcatcactttctggaaatc |
44459145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 402
Target Start/End: Complemental strand, 44466709 - 44466678
Alignment:
| Q |
371 |
ttactaagaagactcatcactttctggaaatc |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
44466709 |
ttactaagaagactcatcactttctggaaatc |
44466678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 44460044 - 44459962
Alignment:
| Q |
214 |
ctttatgaagtatataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga |
296 |
Q |
| |
|
|||||| |||| |||||||| ||||| | ||| ||| |||||||| |||||||||||| | ||||||||||||||||||| |
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|
| T |
44460044 |
ctttataaagtggataagattatgaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttga |
44459962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 44467577 - 44467495
Alignment:
| Q |
214 |
ctttatgaagtatataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga |
296 |
Q |
| |
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|||||| |||| |||||||| ||||| | ||| ||| |||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
44467577 |
ctttataaagtggataagattatgaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttga |
44467495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 46359115 - 46358821
Alignment:
| Q |
19 |
gagtttatttagaatccttgcgttaagaaagtcagtttcatagcggccaattttcttaagcatgtcccacagaaaaaatatgtatttcttccttagttta |
118 |
Q |
| |
|
||||| ||| |||||||| | | |||||| |||||| | |||| ||||||| | |||||||| ||||||||||||||||||| ||||||||||| | | |
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| T |
46359115 |
gagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttagatga |
46359016 |
T |
|
| Q |
119 |
acattaaaatcatagtgaacagcagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatcttta |
218 |
Q |
| |
|
| |||| |||| | | |||| | | |||| | |||||| |||||| |||| ||||| |||||| ||||| |||| |||||||| || ||||| |
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|
| T |
46359015 |
atattatcatcagtggaaccagcgg--catatttctgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaacttta |
46358918 |
T |
|
| Q |
219 |
tgaagtatataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatg |
315 |
Q |
| |
|
| |||| |||||||| |||||| |||| ||| ||| |||| | |||||||||||||||||||||||||||||||| | | ||||| ||||||||| |
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| T |
46358917 |
taaagttgataagattatgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg |
46358821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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