View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5498_low_5 (Length: 255)
Name: NF5498_low_5
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498_low_5 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 2631169 - 2630933
Alignment:
| Q |
13 |
atactcacggattctatgccaaaggtccatatcttgttgtaagttaggatgaatatgtggctgcactagaccatctccatgcccccgttttgtaagatat |
112 |
Q |
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| T |
2631169 |
atactcacggattctatgccaaaggtccatatcttgttgtaagttaggatgaatatgttgctgcactagaccatctccatgcccccgttttgtaagatat |
2631070 |
T |
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| Q |
113 |
aggctgaggccttgaaagcggtagaaatgtgcatcttgtccttattgtggcgcataaccccctttctgtaaggtctcgtttgcgagtgtttccgtgaaac |
212 |
Q |
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| T |
2631069 |
aggctgaggccttgaaagcggtagaaatgtgcatcttgtccttattgtggcgcataacccccttgctgtaaggtctcgtttgcgagtgtttccgtgaagc |
2630970 |
T |
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| Q |
213 |
ccggcgacaaacacgggagttcgttggagatcacatc |
249 |
Q |
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| T |
2630969 |
ccgacgacaaacacgggagttcgttggagatcacatc |
2630933 |
T |
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Target: scaffold0236 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 5916 - 5839
Alignment:
| Q |
13 |
atactcacggattctatgccaaaggtccatatcttgttgtaagttaggatgaatatgtggctgcactagaccatctccatg |
93 |
Q |
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| T |
5916 |
atactcacatattctttgccaaaggtccatatcatgttgtatgttaggattaatat---gctgtactagaccatcgccatg |
5839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 5569849 - 5569906
Alignment:
| Q |
33 |
aaaggtccatatcttgttgtaagttaggatgaatatgtggctgcactagaccatctccatg |
93 |
Q |
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| T |
5569849 |
aaaggtccatatcctgttgtatgttaggattaatat---gctgcactggaccatctccatg |
5569906 |
T |
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