View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5498_low_7 (Length: 242)
Name: NF5498_low_7
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 6405419 - 6405207
Alignment:
| Q |
20 |
agttccacatatatgaaaa-gggcaaacaatgacaaaagagtcttatatttaagggtaaaatgagtaattaatattacaacaaaatttagaagtgacatc |
118 |
Q |
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| T |
6405419 |
agttccacatatatgaaaaagggcagacaatgacaaaagagtcttatatttaaaggtaaaatgagtaattaatattacaacaaaatttagaagtgacatc |
6405320 |
T |
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| Q |
119 |
caggtcaaaattttatttttccaaatgtgtaacctcttctagaaagaagtggataaagaatcgctcgtagattaacggtnnnnnnnnttagactattact |
218 |
Q |
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| T |
6405319 |
cagttcaaaattttatttttgcaaatgtgtaaccttttctagaaagaagtggataaagaatcgctcgtagattaacggt--aaaaaattagactattatt |
6405222 |
T |
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| Q |
219 |
ttttccaccctatgc |
233 |
Q |
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||||||||||||||| |
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| T |
6405221 |
ttttccaccctatgc |
6405207 |
T |
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