View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5498_low_8 (Length: 239)
Name: NF5498_low_8
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 47807953 - 47807749
Alignment:
| Q |
16 |
atgaacaagtaaagagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacaggga |
115 |
Q |
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| T |
47807953 |
atgaacaagtaaagagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacaggga |
47807854 |
T |
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| Q |
116 |
aacaaagtagttcaaattttccgctatatatttaagtnnnnnnnnnnnnnnnncaattcaaaatgtcacgatagtcgccgaatgacaacttaaaacaatg |
215 |
Q |
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| T |
47807853 |
aacaaagtagttcaaattttccgctatatatttaagtaaaaataaaataaaaacaattcaacgtgtcacgatagtcgccgaatgacaacttaaaacaatg |
47807754 |
T |
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| Q |
216 |
acacg |
220 |
Q |
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||||| |
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| T |
47807753 |
acacg |
47807749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 47805204 - 47805085
Alignment:
| Q |
28 |
agagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagtagtt |
127 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||| |||| |||| |
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| T |
47805204 |
agagtcaagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaatgccagcagggaaa-aaagaagtt |
47805106 |
T |
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| Q |
128 |
caaattttccgctatatattt |
148 |
Q |
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|||| |||||||||||||| |
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| T |
47805105 |
aaaatcatccgctatatattt |
47805085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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