View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5498_low_9 (Length: 238)
Name: NF5498_low_9
Description: NF5498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5498_low_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 780770 - 780991
Alignment:
| Q |
17 |
aaaatgaccattaaatttcaataataggccatatcaatggctttatccctcaagtttcttgctgaatttgatgtttttcatctgatgtttaaatttttcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
780770 |
aaaatgaccattaaatttcaataataggccatatcaatggctttatccctcaagtttcttgctgaatttgatgtttttcatctgatgtttaaatttttcc |
780869 |
T |
|
| Q |
117 |
tcttcaacgtgtacttgagaatatttcttctcactcagcaactgtttcggcagttttcttttcgttaaatgtacaacttaatgattcttctttaacattc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
780870 |
tcttcaacgtgtacttgagaatatttcttctcactcagcaactgtttcggcagttttcttttcgttaaatgtacaacttaatgattcttctttaacattc |
780969 |
T |
|
| Q |
217 |
ttagaaaaattatataataagg |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
780970 |
ttagaaaaattatataataagg |
780991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 26305064 - 26305120
Alignment:
| Q |
183 |
aaatgtacaacttaatgattcttctttaacattcttag-aaaaattatataataagg |
238 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| |||| ||| ||||||||| |
|
|
| T |
26305064 |
aaatgtacaacttaattattcttgtttaacattcttagtaaaagttacataataagg |
26305120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 46208758 - 46208808
Alignment:
| Q |
188 |
tacaacttaatgattcttctttaacattcttagaaaaattatataataagg |
238 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||| ||||| ||||||| |
|
|
| T |
46208758 |
tacaacttaatgatttttcttgaagattcttagaaaagttatacaataagg |
46208808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University