View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5499-Insertion-2 (Length: 381)

Name: NF5499-Insertion-2
Description: NF5499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5499-Insertion-2
NF5499-Insertion-2
[»] chr5 (5 HSPs)
chr5 (8-369)||(13484344-13484705)
chr5 (204-258)||(17145352-17145406)
chr5 (187-259)||(9123832-9123904)
chr5 (187-259)||(18391602-18391674)
chr5 (212-259)||(2001982-2002029)
[»] chr4 (12 HSPs)
chr4 (214-259)||(7922264-7922309)
chr4 (187-259)||(19854567-19854639)
chr4 (187-259)||(19908694-19908766)
chr4 (212-256)||(33900736-33900780)
chr4 (190-256)||(24488427-24488493)
chr4 (190-248)||(47806246-47806304)
chr4 (187-256)||(10082407-10082476)
chr4 (206-259)||(11286787-11286840)
chr4 (191-235)||(9990292-9990336)
chr4 (219-259)||(10519137-10519177)
chr4 (187-251)||(12671735-12671799)
chr4 (187-239)||(16432944-16432996)
[»] chr3 (9 HSPs)
chr3 (187-256)||(38869505-38869574)
chr3 (214-257)||(13992675-13992718)
chr3 (212-259)||(17588364-17588411)
chr3 (217-259)||(47377366-47377408)
chr3 (214-259)||(8113576-8113621)
chr3 (213-258)||(31138420-31138465)
chr3 (206-259)||(43334518-43334571)
chr3 (187-259)||(5702166-5702236)
chr3 (187-259)||(26768403-26768475)
[»] chr2 (13 HSPs)
chr2 (187-259)||(18324881-18324953)
chr2 (187-259)||(24393247-24393319)
chr2 (212-259)||(27934869-27934916)
chr2 (217-259)||(7413206-7413248)
chr2 (213-259)||(9459070-9459116)
chr2 (217-259)||(37320534-37320576)
chr2 (218-259)||(40896527-40896568)
chr2 (222-259)||(44926423-44926460)
chr2 (210-259)||(45032695-45032744)
chr2 (187-235)||(3503000-3503048)
chr2 (187-251)||(12124555-12124619)
chr2 (197-237)||(19549460-19549500)
chr2 (187-259)||(34903519-34903591)
[»] chr7 (11 HSPs)
chr7 (213-259)||(34885876-34885922)
chr7 (187-259)||(5458058-5458130)
chr7 (211-259)||(8683072-8683120)
chr7 (204-259)||(5352331-5352386)
chr7 (217-260)||(12288372-12288415)
chr7 (187-258)||(32896451-32896522)
chr7 (222-259)||(37930046-37930083)
chr7 (210-259)||(48980489-48980538)
chr7 (215-259)||(24991783-24991827)
chr7 (223-259)||(34607010-34607046)
chr7 (219-259)||(37240097-37240137)
[»] chr8 (9 HSPs)
chr8 (187-256)||(1244692-1244761)
chr8 (187-259)||(17704015-17704087)
chr8 (187-259)||(33445572-33445644)
chr8 (190-240)||(5880974-5881024)
chr8 (210-260)||(8442497-8442547)
chr8 (193-259)||(30623295-30623361)
chr8 (214-259)||(13286133-13286178)
chr8 (187-259)||(27750891-27750963)
chr8 (187-259)||(44293577-44293649)
[»] chr6 (2 HSPs)
chr6 (215-259)||(26522474-26522518)
chr6 (217-259)||(788868-788910)
[»] chr1 (3 HSPs)
chr1 (217-256)||(15764037-15764076)
chr1 (210-259)||(28039870-28039919)
chr1 (187-259)||(40227831-40227903)
[»] scaffold0007 (1 HSPs)
scaffold0007 (206-255)||(202594-202643)
[»] scaffold0197 (1 HSPs)
scaffold0197 (187-259)||(21742-21814)


Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 13484344 - 13484705
Alignment:
Q  8 actacctctttactccttcattcctcacgtatatctatacacatatactttcatgcaatcttattcttccctttgtgtaaaacgtatttactcaaattta 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484344 actatctctttactccttcattcctcacgtatatctatacacatatactttcatgcaatcttattcttccctttgtgtaaaacgtatttactcaaattta 13484443  T
Q  108 cccatattataaatgaatatctaccaacaattataaatgaatctaaatattataatttgttacgtaaatattttgaaaatttgtggtgttcgaggatcga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484444 cccatattataaatgaatatctaccaacaattataaatgaatctaaatattataatttgttacgtaaatattttgaaaatttgtggtgttcgaggatcga 13484543  T
Q  208 atctcagatcttgtatatattatgcattgtcttcaccaactgagataagctcgtgaaaacaaattttttaattaacggatacatatgcaaacttttttaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484544 atctcagatcttgtatatattatgcattgtcttcaccaactgagataagctcgtgaaaacaaattttttaattaacggatacatatgcaaacttttttaa 13484643  T
Q  308 attgtaagtgcaaaataatttaacttttgtgtattatatcatgtatatagctaggttcttga 369  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484644 attgtaagtgaaaaataatttaacttttgtgtattatatcatgtatatagctaggttcttga 13484705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 17145352 - 17145406
Alignment:
Q  204 tcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagct 258  Q
    ||||| ||||||||||| ||||||||| ||||||||| |||||||||| ||||||    
T  17145352 tcgaacctcagatcttgcatatattatacattgtctttaccaactgagttaagct 17145406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 9123832 - 9123904
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||||  |||| |||||  || ||||||  ||||||||||||||||||| |||||||||| |||||||    
T  9123832 tttgtggtgtctgaggttcgaacttcggatcttacatatattatgcattgtctttaccaactgagttaagctc 9123904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 18391674 - 18391602
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||| |||||| ||||| ||| || |||| |||| |||||||||||| | |||||||||| |||||||    
T  18391674 tttgtggtggtcgaggttcgaacctcggaccttgcatattttatgcattgtccttaccaactgagctaagctc 18391602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 2002029 - 2001982
Alignment:
Q  212 cagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||| ||||||||||||||||| |||||| ||||||||| ||||||||    
T  2002029 cagaccttgtatatattatgcaatgtctttaccaactgaaataagctc 2001982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 7922264 - 7922309
Alignment:
Q  214 gatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||    
T  7922264 gatcttgcatatattatgcattgtctttaccaactgagataagctc 7922309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 19854639 - 19854567
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||| ||||| ||||| | | ||||||| |||||||||||||||||   |||||||||| |||||||    
T  19854639 tttgtggtgtccgaggttcgaaccccggatcttgcatatattatgcattgtccataccaactgagctaagctc 19854567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 19908766 - 19908694
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||| ||| || ||||| ||| || |||| ||||||||||||||||| | |||||||||| |||||||    
T  19908766 tttgtggtggtcggggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagctc 19908694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 33900736 - 33900780
Alignment:
Q  212 cagatcttgtatatattatgcattgtcttcaccaactgagataag 256  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||    
T  33900736 cagatcttgcatatattatgcattgtccttaccaactgagataag 33900780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 24488493 - 24488427
Alignment:
Q  190 gtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataag 256  Q
    ||||||| ||||| || ||||||  | |||||||||||||||||||||| | |||||||||| ||||    
T  24488493 gtggtgtccgaggttcaaatctcgaaccttgtatatattatgcattgtcattaccaactgagttaag 24488427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 47806246 - 47806304
Alignment:
Q  190 gtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaact 248  Q
    |||||||||| || ||||| | |||| |||| ||||||||||||||||| |||||||||    
T  47806246 gtggtgttcggggttcgaaccccagaccttgcatatattatgcattgtcctcaccaact 47806304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 10082476 - 10082407
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataag 256  Q
    ||||||||| |||||| | ||| |||| ||||||||||||||||| ||||||   |||||||||| ||||    
T  10082476 tttgtggtggtcgaggtttgaacctcatatcttgtatatattatgtattgtccctaccaactgagctaag 10082407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 11286787 - 11286840
Alignment:
Q  206 gaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||| |||| ||||||||||||||||||  |||||||||  |||||||    
T  11286787 gaatctcagaccttgcatatattatgcattgtctctaccaactgaactaagctc 11286840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 9990336 - 9990292
Alignment:
Q  191 tggtgttcgaggatcgaatctcagatcttgtatatattatgcatt 235  Q
    |||||| ||||| ||||| ||||||||||| ||||||||||||||    
T  9990336 tggtgtccgaggttcgaacctcagatcttgcatatattatgcatt 9990292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 10519177 - 10519137
Alignment:
Q  219 tgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||||||||||||||  |||||||||| |||||||    
T  10519177 tgtatatattatgcattgtctataccaactgagctaagctc 10519137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 12671735 - 12671799
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgag 251  Q
    ||||||||| |||||| ||||| | | ||||||| |||| |||||||||||||  ||||||||||    
T  12671735 tttgtggtggtcgaggttcgaaccccggatcttgcatattttatgcattgtctataccaactgag 12671799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 16432944 - 16432996
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtct 239  Q
    ||||||||| ||| || | ||| |||||||||| |||||||||||||||||||    
T  16432944 tttgtggtggtcggggtttgaacctcagatcttatatatattatgcattgtct 16432996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 38869505 - 38869574
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataag 256  Q
    |||||||||||||||  ||||| ||| ||||||||||||||||||||||||  | |||||||||| ||||    
T  38869505 tttgtggtgttcgagtttcgaacctcggatcttgtatatattatgcattgttcttaccaactgagctaag 38869574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 13992718 - 13992675
Alignment:
Q  214 gatcttgtatatattatgcattgtcttcaccaactgagataagc 257  Q
    ||||||||||||||||||||||||| | |||||||||| |||||    
T  13992718 gatcttgtatatattatgcattgtccttaccaactgagctaagc 13992675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 17588411 - 17588364
Alignment:
Q  212 cagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||| ||||||||||||||||| | |||||||||| |||||||    
T  17588411 cagatcttgcatatattatgcattgtccttaccaactgagttaagctc 17588364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 47377366 - 47377408
Alignment:
Q  217 cttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||||||||||||||| | |||||||||| |||||||    
T  47377366 cttgtatatattatgcattgtccttaccaactgagttaagctc 47377408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 8113576 - 8113621
Alignment:
Q  214 gatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||| ||||||||||||||||| | |||||||||| |||||||    
T  8113576 gatcttgcatatattatgcattgtccttaccaactgagctaagctc 8113621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 31138465 - 31138420
Alignment:
Q  213 agatcttgtatatattatgcattgtcttcaccaactgagataagct 258  Q
    |||||||| ||||||||||||||||||  | |||||||||||||||    
T  31138465 agatcttgcatatattatgcattgtctctatcaactgagataagct 31138420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 43334518 - 43334571
Alignment:
Q  206 gaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||| |||||||||||||||||| ||| | |||| ||||| |||||||    
T  43334518 gaatctcagaccttgtatatattatgcatggtccttaccagctgagttaagctc 43334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 5702166 - 5702236
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||| | ||| ||||| |||| | |||| ||||||||||||||||||| |||||||||| |||||||    
T  5702166 tttgtggtgtcc-aggttcgaacctcaaaccttgcatatattatgcattgtctt-accaactgagctaagctc 5702236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 26768475 - 26768403
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||| ||| || | ||| |||||| |||| |||| |||||||||||||  |||| |||||||||||||    
T  26768475 tttgtggtggtcggggtttgaagctcagaccttgcatattttatgcattgtctataccagctgagataagctc 26768403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 18324881 - 18324953
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||||||  || |||||||  |||||||| ||||||||||||||||| | |||||||||| |||||||    
T  18324881 tttgtggtgttcagggttcgaatcctagatcttgcatatattatgcattgtccttaccaactgagttaagctc 18324953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 24393319 - 24393247
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||| || || ||||| |||||| |||| ||||||||||||||||| | | |||||||| |||||||    
T  24393319 tttgtggtgtccggggttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaagctc 24393247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 27934869 - 27934916
Alignment:
Q  212 cagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||||||||||||| |||||| | |||||||||| |||||||    
T  27934869 cagatcttgtatatattatgtattgtccttaccaactgagctaagctc 27934916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 7413206 - 7413248
Alignment:
Q  217 cttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||||||||||||||| | |||||||||| |||||||    
T  7413206 cttgtatatattatgcattgtccttaccaactgagctaagctc 7413248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 9459070 - 9459116
Alignment:
Q  213 agatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||| ||||||||||||||||||||||| | |||||||| |||||||    
T  9459070 agattttgtatatattatgcattgtctttatcaactgagctaagctc 9459116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 37320534 - 37320576
Alignment:
Q  217 cttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||| ||||||||||||||||||| |||||||||| |||||||    
T  37320534 cttgcatatattatgcattgtctttaccaactgagttaagctc 37320576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 40896527 - 40896568
Alignment:
Q  218 ttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||||||||||||||||  |||||||||| |||||||    
T  40896527 ttgtatatattatgcattgtctataccaactgagctaagctc 40896568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 44926423 - 44926460
Alignment:
Q  222 atatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  44926423 atatataatgcattgtctttaccaactgagataagctc 44926460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 45032744 - 45032695
Alignment:
Q  210 ctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||||| |||||||||||||||||   |||||||||| |||||||    
T  45032744 ctcagatcttgcatatattatgcattgtccctaccaactgaggtaagctc 45032695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 3503048 - 3503000
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcatt 235  Q
    ||||||||||||  || |||||||||||| |||| ||||||||||||||    
T  3503048 tttgtggtgttcagggttcgaatctcagaccttgcatatattatgcatt 3503000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 12124619 - 12124555
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgag 251  Q
    ||||||||||| |||| ||||| | | || |||| ||||||||||||||||| | ||||||||||    
T  12124619 tttgtggtgtttgaggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgag 12124555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 19549500 - 19549460
Alignment:
Q  197 tcgaggatcgaatctcagatcttgtatatattatgcattgt 237  Q
    |||||| |||||||||||| |||| ||||||||||||||||    
T  19549500 tcgaggttcgaatctcagaccttgcatatattatgcattgt 19549460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 34903591 - 34903519
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||| || || ||||| |||||| |||| |||||||||||| |||| | |||||||||  |||||||    
T  34903591 tttgtggtgtccggggttcgaacctcagaccttgcatatattatgcactgtccttaccaactgaactaagctc 34903519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 34885922 - 34885876
Alignment:
Q  213 agatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||    
T  34885922 agatcttgcatatatcatgcattgtcttcaccaactgagctaagctc 34885876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 5458058 - 5458130
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||||||||| | ||||| |||| |||| ||||||||||||||||  | | |||||||| |||||||    
T  5458058 tttgtggtgttcgaggtttgaatcccagaccttgcatatattatgcattgttcttatcaactgagctaagctc 5458130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 8683120 - 8683072
Alignment:
Q  211 tcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||| ||||||||||||||||||  |||||||||| |||||||    
T  8683120 tcagatcttgcatatattatgcattgtctataccaactgagctaagctc 8683072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 5352386 - 5352331
Alignment:
Q  204 tcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||| || ||||||||||||||| |||||| | |||||||||| |||||||    
T  5352386 tcgaatctcggaccttgtatatattatgtattgtccttaccaactgagctaagctc 5352331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 12288415 - 12288372
Alignment:
Q  217 cttgtatatattatgcattgtcttcaccaactgagataagctcg 260  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||    
T  12288415 cttgtatacattatgcattgtcctcaccaactgagttaagctcg 12288372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 32896451 - 32896522
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagct 258  Q
    ||||||||||  |||| ||||| | || |||||||||||||||||||||||| |  ||||||||| ||||||    
T  32896451 tttgtggtgtctgaggttcgaaccccaaatcttgtatatattatgcattgtccttcccaactgagttaagct 32896522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 37930083 - 37930046
Alignment:
Q  222 atatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  37930083 atatattatgcattgtccttaccaactgagataagctc 37930046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 48980538 - 48980489
Alignment:
Q  210 ctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||| |||||||||||||||||||||   |||||||||| |||||||    
T  48980538 ctcagatattgtatatattatgcattgtccataccaactgagctaagctc 48980489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 24991827 - 24991783
Alignment:
Q  215 atcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||| ||||||||||||||||| | |||||||||| |||||||    
T  24991827 atcttgcatatattatgcattgtccttaccaactgagctaagctc 24991783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 34607010 - 34607046
Alignment:
Q  223 tatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  34607010 tatattatgcattatctttaccaactgagataagctc 34607046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 37240097 - 37240137
Alignment:
Q  219 tgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||||||||| |||||| |||||||||| |||||||    
T  37240097 tgtatatattatgcaatgtctttaccaactgagttaagctc 37240137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 1244692 - 1244761
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataag 256  Q
    |||||||||| || || ||||| | |||| |||||||||||||||||||||| | |||||||||| ||||    
T  1244692 tttgtggtgtccggggttcgaaccccagaccttgtatatattatgcattgtccttaccaactgagctaag 1244761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 17704087 - 17704015
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||  ||||| | ||||| |||| |||| ||||||||||||||||| | |||||||||| |||||||    
T  17704087 tttgtggtggccgaggtttgaatcacagaccttgcatatattatgcattgtccttaccaactgagctaagctc 17704015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 33445644 - 33445572
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||||  |||| |||||||||| | |||||||||||||||||||||    |||||||||| |||||||    
T  33445644 tttgtggtgtctgaggttcgaatctcaaaccttgtatatattatgcattgttcctaccaactgagctaagctc 33445572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 5880974 - 5881024
Alignment:
Q  190 gtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtctt 240  Q
    |||||||| |||| | |||||||| | ||||||||||||||||||||||||    
T  5880974 gtggtgtttgaggtttgaatctcaaaccttgtatatattatgcattgtctt 5881024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 8442497 - 8442547
Alignment:
Q  210 ctcagatcttgtatatattatgcattgtcttcaccaactgagataagctcg 260  Q
    |||||| |||| ||||||||||||||||| | |||||||||| ||||||||    
T  8442497 ctcagaccttgcatatattatgcattgtccttaccaactgagttaagctcg 8442547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 30623361 - 30623295
Alignment:
Q  193 gtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||| || ||||| | |||| |||| ||||||||||||||||| | |||||||||| |||||||    
T  30623361 gtgttcggggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagctc 30623295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 13286178 - 13286133
Alignment:
Q  214 gatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||| ||||||||||||||||||  |||||||||| |||||||    
T  13286178 gatcttgcatatattatgcattgtctataccaactgagctaagctc 13286133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 27750891 - 27750963
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||| |||||||||| ||||| | | || |||| |||||||||||| |||| | |||||||||| |||||||    
T  27750891 tttgtagtgttcgaggttcgaaccccggaccttgcatatattatgcactgtccttaccaactgagctaagctc 27750963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 44293649 - 44293577
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||| ||  || ||||| | ||||||||  ||||||||||||||||||  |||||||||| |||||||    
T  44293649 tttgtggtggtcagggttcgaaccccagatcttacatatattatgcattgtctataccaactgagctaagctc 44293577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 26522518 - 26522474
Alignment:
Q  215 atcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||||||||||||||||||||| | |||||||||| |||||||    
T  26522518 atcttgtatatattatgcattgtccttaccaactgagctaagctc 26522474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 788910 - 788868
Alignment:
Q  217 cttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||| ||||||||||||||||| | ||||||||||||||||||    
T  788910 cttgcatatattatgcattgtccttaccaactgagataagctc 788868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 15764076 - 15764037
Alignment:
Q  217 cttgtatatattatgcattgtcttcaccaactgagataag 256  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  15764076 cttgtatatattatgcattgtccttaccaactgagataag 15764037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 28039870 - 28039919
Alignment:
Q  210 ctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    |||||| |||| ||||||||||||||||| | |||||||||| |||||||    
T  28039870 ctcagaccttgcatatattatgcattgtccttaccaactgagttaagctc 28039919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 40227903 - 40227831
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||| ||| || ||||| | |||| ||||||||| ||||||||||||   |||||||||| |||||||    
T  40227903 tttgtggtggtcggggttcgaaccccagaccttgtatattttatgcattgtccataccaactgagctaagctc 40227831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 202643 - 202594
Alignment:
Q  206 gaatctcagatcttgtatatattatgcattgtcttcaccaactgagataa 255  Q
    |||||||||| ||| |||||||||||||| ||||| || |||||||||||    
T  202643 gaatctcagaccttatatatattatgcatcgtcttaactaactgagataa 202594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 21742 - 21814
Alignment:
Q  187 tttgtggtgttcgaggatcgaatctcagatcttgtatatattatgcattgtcttcaccaactgagataagctc 259  Q
    ||||||||| |||||  | ||| |||| | ||||||||| |||||||||||||  |||||||||| |||||||    
T  21742 tttgtggtggtcgagatttgaacctcataccttgtatattttatgcattgtctataccaactgagctaagctc 21814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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