View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5499-Insertion-3 (Length: 281)
Name: NF5499-Insertion-3
Description: NF5499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5499-Insertion-3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 51861302 - 51861566
Alignment:
| Q |
8 |
aagggtactaggggaagatattggcatgggatggtgttgatttggacaaaggagttaactgtatggagtaaagaattttgtaggttcttgaatctaattt |
107 |
Q |
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| T |
51861302 |
aaggatactaggggaagatattggcatgtgatggtgttgatttggacaaaggaattaactgtatggagtaaagaattttgtaggttcttgaatctaattt |
51861401 |
T |
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| Q |
108 |
tgtggtttggttattttattatctcattactttcccctaatatannnnnnnncgcgaattggtgttttcctaaaattgaaataatattcaaatttcccaa |
207 |
Q |
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| T |
51861402 |
tatggtttggttattttattatctcattactttcccctaatat--ttttttccgcgaattggtgttttcctaaaattgaaagaatatttaaatttcccaa |
51861499 |
T |
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| Q |
208 |
atttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggataaacaattcatgg |
274 |
Q |
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| T |
51861500 |
atttttgtgcacataaattgaagaccacgtccattcacaacgtatatcagggataaacaattcatgg |
51861566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 22158695 - 22158435
Alignment:
| Q |
11 |
ggtactaggggaagatattggcatgggatggtgttgatttggacaaaggagttaactgtatggagtaaagaattttgtaggttcttgaatctaattttgt |
110 |
Q |
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| T |
22158695 |
ggtactaggggaagatattggcatgggatggtgttgatttggacaaaggaattaactatatggagtaaagaattttataggttcttgaatctaattttat |
22158596 |
T |
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| Q |
111 |
ggtttggttattttattatctcattactttcccctaatatannnnnnnncgcgaattggtgttttcctaaaattgaaataatattcaaatttcccaaatt |
210 |
Q |
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| T |
22158595 |
ggtttggttattttatgatctcattactttcccctaatata-tttttttcgcgaattggtgttttcctaaaattgaaagaatattcaaatttcccaaatt |
22158497 |
T |
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| Q |
211 |
tttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggataaacaattcat |
272 |
Q |
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| T |
22158496 |
tttgtgcacataaattgaagaccacgtccattcacaacgtatatcaggaataaacaattcat |
22158435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 163 - 281
Target Start/End: Complemental strand, 9333609 - 9333491
Alignment:
| Q |
163 |
gaattggtgttttcctaaaattgaaataatattcaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggata |
262 |
Q |
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| T |
9333609 |
gaattggtgttttcctaaaattgaaagaatattcaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggata |
9333510 |
T |
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| Q |
263 |
aacaattcatgggatcgat |
281 |
Q |
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| T |
9333509 |
aacaattcatggggtcgat |
9333491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 9333727 - 9333642
Alignment:
| Q |
8 |
aagggtactaggggaagatattggcatgggatggtgttgatttggacaaaggagttaactgtatggagtaaagaattttgtaggtt |
93 |
Q |
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| T |
9333727 |
aagggtactaggggaagatattgacatggcatggtgttgatttggacaaaggaattaactgtatggagtaaagaattttgtaggtt |
9333642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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