View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5499-Insertion-5 (Length: 60)
Name: NF5499-Insertion-5
Description: NF5499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5499-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 50; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 9570879 - 9570826
Alignment:
| Q |
7 |
atgttctgttccaacactttggtttgtttaaggtttcatgaatttgtgctgttg |
60 |
Q |
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| T |
9570879 |
atgttctgttccaacactttggtttgtttaaggtttcatgaatttgtgttgttg |
9570826 |
T |
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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 9562779 - 9562726
Alignment:
| Q |
7 |
atgttctgttccaacactttggtttgtttaaggtttcatgaatttgtgctgttg |
60 |
Q |
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| T |
9562779 |
atgttccgttccaacactttggcttgtttaaagtttcatgaatttgtgttgttg |
9562726 |
T |
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