View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5499_high_1 (Length: 260)

Name: NF5499_high_1
Description: NF5499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5499_high_1
NF5499_high_1
[»] chr4 (44 HSPs)
chr4 (19-166)||(3393897-3394044)
chr4 (19-168)||(13866571-13866721)
chr4 (19-152)||(17292358-17292491)
chr4 (19-171)||(31324478-31324630)
chr4 (19-150)||(17211879-17212010)
chr4 (19-138)||(18413142-18413261)
chr4 (19-152)||(24576631-24576764)
chr4 (19-123)||(9717935-9718039)
chr4 (81-168)||(13851057-13851144)
chr4 (19-123)||(21411380-21411484)
chr4 (19-123)||(21411961-21412065)
chr4 (19-134)||(10315154-10315269)
chr4 (87-168)||(13866686-13866767)
chr4 (92-168)||(9718009-9718085)
chr4 (87-167)||(31324595-31324675)
chr4 (169-227)||(23124850-23124908)
chr4 (82-155)||(44100840-44100913)
chr4 (21-66)||(20758659-20758704)
chr4 (21-66)||(20765050-20765095)
chr4 (19-66)||(23620597-23620644)
chr4 (92-158)||(21411344-21411410)
chr4 (92-158)||(21412035-21412101)
chr4 (19-64)||(4911031-4911076)
chr4 (87-168)||(10315234-10315315)
chr4 (169-226)||(17291787-17291844)
chr4 (87-152)||(23620567-23620632)
chr4 (111-168)||(49791276-49791333)
chr4 (87-147)||(18413226-18413286)
chr4 (116-168)||(49423087-49423139)
chr4 (95-150)||(49816800-49816855)
chr4 (82-152)||(12227268-12227338)
chr4 (122-168)||(17054785-17054831)
chr4 (87-149)||(20758630-20758692)
chr4 (87-149)||(20765021-20765083)
chr4 (169-227)||(42420873-42420931)
chr4 (19-57)||(49816828-49816866)
chr4 (116-168)||(2773829-2773881)
chr4 (136-168)||(4784711-4784743)
chr4 (116-168)||(25763393-25763445)
chr4 (116-168)||(34152617-34152669)
chr4 (116-168)||(42887095-42887147)
chr4 (116-168)||(44559658-44559710)
chr4 (116-168)||(49571924-49571976)
chr4 (116-168)||(51427532-51427584)
[»] chr2 (21 HSPs)
chr2 (19-152)||(31991604-31991737)
chr2 (19-159)||(20148744-20148884)
chr2 (19-150)||(16708015-16708146)
chr2 (19-150)||(16708465-16708596)
chr2 (19-168)||(15891401-15891541)
chr2 (70-141)||(27650168-27650239)
chr2 (92-168)||(15891355-15891431)
chr2 (169-227)||(31992256-31992314)
chr2 (169-227)||(26617796-26617854)
chr2 (169-215)||(27650747-27650793)
chr2 (79-152)||(18878861-18878934)
chr2 (116-168)||(2918698-2918750)
chr2 (116-168)||(24108127-24108179)
chr2 (116-168)||(34521086-34521138)
chr2 (116-168)||(40676751-40676803)
chr2 (116-168)||(43492278-43492330)
chr2 (169-223)||(15891967-15892021)
chr2 (116-168)||(10359543-10359595)
chr2 (116-168)||(17538273-17538325)
chr2 (116-168)||(23408540-23408592)
chr2 (116-168)||(37311998-37312050)
[»] chr6 (25 HSPs)
chr6 (19-168)||(20241875-20242024)
chr6 (19-168)||(22135859-22136008)
chr6 (19-168)||(22143212-22143361)
chr6 (19-168)||(14482571-14482720)
chr6 (19-159)||(23911364-23911504)
chr6 (28-150)||(17464970-17465092)
chr6 (87-168)||(20241829-20241910)
chr6 (87-168)||(22135813-22135894)
chr6 (87-168)||(22143166-22143247)
chr6 (87-168)||(14482524-14482606)
chr6 (169-223)||(20242451-20242505)
chr6 (169-223)||(22136435-22136489)
chr6 (82-152)||(20244535-20244605)
chr6 (82-152)||(22138519-22138589)
chr6 (47-80)||(28051739-28051772)
chr6 (169-210)||(33718914-33718955)
chr6 (116-168)||(12397605-12397657)
chr6 (169-225)||(17465592-17465648)
chr6 (116-168)||(32026956-32027008)
chr6 (116-168)||(32037015-32037067)
chr6 (122-168)||(7821407-7821453)
chr6 (169-210)||(14483125-14483166)
chr6 (25-66)||(21864390-21864431)
chr6 (197-226)||(34132420-34132449)
chr6 (116-168)||(4495710-4495762)
[»] chr3 (21 HSPs)
chr3 (19-150)||(6463836-6463967)
chr3 (19-134)||(6754818-6754933)
chr3 (22-120)||(20375369-20375467)
chr3 (19-123)||(25887094-25887198)
chr3 (19-101)||(14265669-14265751)
chr3 (87-168)||(25887048-25887129)
chr3 (19-64)||(7955224-7955269)
chr3 (87-168)||(14265716-14265797)
chr3 (87-168)||(20375320-20375401)
chr3 (116-168)||(27187894-27187946)
chr3 (116-168)||(46413649-46413701)
chr3 (85-152)||(20409554-20409621)
chr3 (116-168)||(14632274-14632326)
chr3 (128-168)||(25887982-25888022)
chr3 (89-149)||(29787831-29787891)
chr3 (116-168)||(34471419-34471471)
chr3 (116-168)||(34646553-34646605)
chr3 (116-168)||(41578743-41578795)
chr3 (116-168)||(43570699-43570751)
chr3 (116-168)||(49274241-49274293)
chr3 (116-168)||(51016093-51016145)
[»] chr5 (28 HSPs)
chr5 (23-152)||(13130759-13130888)
chr5 (49-168)||(12743612-12743731)
chr5 (49-168)||(12806433-12806552)
chr5 (19-148)||(18921118-18921247)
chr5 (19-150)||(10398375-10398506)
chr5 (35-150)||(17366239-17366353)
chr5 (98-168)||(12743278-12743348)
chr5 (98-168)||(12806097-12806167)
chr5 (70-152)||(36311670-36311752)
chr5 (181-226)||(19747892-19747937)
chr5 (19-64)||(33371562-33371607)
chr5 (19-66)||(36311520-36311567)
chr5 (173-227)||(13131405-13131459)
chr5 (181-227)||(25360922-25360968)
chr5 (174-227)||(36312276-36312329)
chr5 (169-227)||(15798407-15798465)
chr5 (87-149)||(36311493-36311555)
chr5 (116-168)||(1695609-1695661)
chr5 (116-168)||(4723410-4723462)
chr5 (116-168)||(34683261-34683313)
chr5 (116-168)||(36349669-36349721)
chr5 (130-168)||(2599559-2599597)
chr5 (25-63)||(23228231-23228269)
chr5 (173-218)||(12067915-12067960)
chr5 (116-168)||(1972186-1972238)
chr5 (116-168)||(6792807-6792859)
chr5 (116-168)||(18309083-18309135)
chr5 (116-168)||(35566095-35566147)
[»] chr1 (19 HSPs)
chr1 (21-150)||(18843041-18843170)
chr1 (22-150)||(5766080-5766206)
chr1 (19-150)||(16531580-16531711)
chr1 (90-168)||(16531534-16531612)
chr1 (169-226)||(15471352-15471409)
chr1 (19-66)||(11788762-11788809)
chr1 (116-168)||(12790612-12790664)
chr1 (80-152)||(19262193-19262265)
chr1 (116-168)||(40532744-40532796)
chr1 (25-68)||(27574855-27574898)
chr1 (170-225)||(31452067-31452122)
chr1 (169-215)||(14772855-14772901)
chr1 (122-168)||(35185804-35185850)
chr1 (122-168)||(37778952-37778998)
chr1 (116-168)||(6436537-6436589)
chr1 (116-168)||(14173087-14173139)
chr1 (116-168)||(23343465-23343517)
chr1 (116-168)||(35525526-35525578)
chr1 (116-168)||(35586252-35586304)
[»] chr7 (26 HSPs)
chr7 (19-108)||(4230130-4230219)
chr7 (19-146)||(1642080-1642207)
chr7 (19-152)||(18149906-18150039)
chr7 (70-150)||(150469-150549)
chr7 (19-87)||(3380373-3380441)
chr7 (83-152)||(11825052-11825121)
chr7 (92-168)||(1642034-1642110)
chr7 (19-81)||(11826435-11826497)
chr7 (19-64)||(21614011-21614056)
chr7 (19-66)||(5281820-5281867)
chr7 (81-152)||(31267431-31267502)
chr7 (19-61)||(150657-150699)
chr7 (169-227)||(3380996-3381054)
chr7 (81-151)||(7413994-7414064)
chr7 (78-152)||(28066611-28066685)
chr7 (115-152)||(3380440-3380477)
chr7 (19-54)||(31267461-31267496)
chr7 (169-215)||(11824531-11824577)
chr7 (169-227)||(12082757-12082815)
chr7 (122-168)||(42735794-42735840)
chr7 (169-218)||(149923-149972)
chr7 (25-66)||(12083605-12083646)
chr7 (25-54)||(16651132-16651161)
chr7 (25-54)||(17625492-17625521)
chr7 (116-168)||(22291655-22291707)
chr7 (116-168)||(41622905-41622957)
[»] scaffold0121 (1 HSPs)
scaffold0121 (169-227)||(5175-5233)
[»] scaffold0015 (1 HSPs)
scaffold0015 (85-152)||(22441-22508)
[»] scaffold0027 (1 HSPs)
scaffold0027 (173-227)||(36490-36544)
[»] scaffold0039 (1 HSPs)
scaffold0039 (107-168)||(107837-107898)
[»] chr8 (2 HSPs)
chr8 (116-168)||(26487265-26487317)
chr8 (25-61)||(22842935-22842971)
[»] scaffold0192 (1 HSPs)
scaffold0192 (122-168)||(17289-17335)
[»] scaffold0589 (1 HSPs)
scaffold0589 (116-168)||(5099-5151)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 3394044 - 3393897
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3394044 atgttatcacatcaaattccttcataaaagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaattcgatatcata 3393945  T
Q  119 acttatacagttgattctgcataatacatgttgttttgaaaggaacaa 166  Q
    ||||| | ||||||||| ||||||||||||||||||||||| ||||||    
T  3393944 acttacatagttgattcggcataatacatgttgttttgaaatgaacaa 3393897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 13866721 - 13866571
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttat-atgaaggaatttgatatcat 117  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| ||||||||    
T  13866721 atgttatcacatcgaatttcctcatataagacgagtcatcacataaagaatgaggtgcattctgtgacactcatcttataaggaaggaattcgatatcat 13866622  T
Q  118 aacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  13866621 aacttatatagtggattctgcataatacatgttgttttgaaaggaacaata 13866571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 17292491 - 17292358
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  17292491 atgttatcaaatcgaattccctcatataagacgagtcatcacataaagaatgaggtgcattccatgacactcatcttatatgaaggaactcgatatcata 17292392  T
Q  119 acttatacagttgattctgcataatacatgttgt 152  Q
    ||||| | ||||||||||||||||||||||||||    
T  17292391 acttacatagttgattctgcataatacatgttgt 17292358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 31324630 - 31324478
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||| |||||||||  || ||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||    
T  31324630 atgttatcatatcgaattctctcgtataagatgagtcatcacataaagaatgaggtgcattctaggacactcatcttatatgaagaaatttgatatcata 31324531  T
Q  119 acttatacagttgattctgcataatacatgttgttttgaaaggaacaatagaa 171  Q
    ||||||| |||||||| || |||||||||||||||||||||||||||||||||    
T  31324530 acttatatagttgattttgaataatacatgttgttttgaaaggaacaatagaa 31324478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 17212010 - 17211879
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17212010 atgttatcacatcaaattccttcatacaagacaagtcatcacacaaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 17211911  T
Q  119 acttatacagttgattctgcataatacatgtt 150  Q
    ||||||| || |||||||  ||||||||||||    
T  17211910 acttatatagctgattctcaataatacatgtt 17211879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 18413261 - 18413142
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  18413261 atgttatcacatcaaattccctcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaattcaatatcata 18413162  T
Q  119 acttatacagttgattctgc 138  Q
     |||||| ||||||||||||    
T  18413161 tcttatatagttgattctgc 18413142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 24576631 - 24576764
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||| |||    
T  24576631 atgttatcacatcaaattccctcatataagacgagtcatcacataaaaaataaggtgcagtccgtgacactcatcttatatgaaggaattcgatattata 24576730  T
Q  119 acttatacagttgattctgcataatacatgttgt 152  Q
    |||| || || ||||| |||||||||||||||||    
T  24576731 acttctatagctgattatgcataatacatgttgt 24576764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 9718039 - 9717935
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  9718039 atgttatcacatcaaattctctcatataagacgggtcatcacataaagaatgaggtgcattctgtgacactcatcttatatgaaggaattcgatatcata 9717940  T
Q  119 actta 123  Q
    |||||    
T  9717939 actta 9717935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 13851144 - 13851057
Alignment:
Q  81 cgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13851144 cgtgacactcatcttatatgaaggaattcgatatcataacttatatagttgattctgcataatacatgttgttttgaaaggaacaata 13851057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 21411380 - 21411484
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    |||| |||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  21411380 atgtcatcacatcaaattccctcatataagacgggtcatcaaataaagaatgaggtgcattttgtgacactcatcttatatgaaggaattagatatcata 21411479  T
Q  119 actta 123  Q
    |||||    
T  21411480 actta 21411484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 21412065 - 21411961
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    |||| |||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  21412065 atgtcatcacatcaaattccctcatataagacgggtcatcaaataaagaatgaggtgcattttgtgacactcatcttatatgaaggaattagatatcata 21411966  T
Q  119 actta 123  Q
    |||||    
T  21411965 actta 21411961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 10315269 - 10315154
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||| |||||||||||||| |||||||||    
T  10315269 atgttatcacatcaaattcattcatataagacgagtcatcacatatagaatgagttgcattctgtgacgctcatcatatatgaaggaattcgatatcata 10315170  T
Q  119 acttatacagttgatt 134  Q
    | ||||| || |||||    
T  10315169 atttatatagctgatt 10315154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 13866686 - 13866767
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||||||| | |||| ||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  13866686 actcgtcttatatgaggaaattcgatgtgataacatatatagttgattctgcataatacatgttgttttgaaaggaacaata 13866767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 9718009 - 9718085
Alignment:
Q  92 tcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||||||||  ||||||||| | ||||| |||| |||||||||||||||||||||||||||||||| |||||||||    
T  9718009 tcttatatgagagaatttgatgtgataacatatatagttgattctgcataatacatgttgttttgaatggaacaata 9718085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 31324595 - 31324675
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaat 167  Q
    |||||||||||| ||  ||||| ||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||    
T  31324595 actcatcttatacgagagaattcgatatgataacatatatagttgattctgcataatacatgttgttctgaaaggaacaat 31324675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 23124850 - 23124908
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  23124850 gaagcgtatgctaacactgaacaaatcggtcattgtttcaaacctacaccataaaaaat 23124908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 44100913 - 44100840
Alignment:
Q  82 gtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgtttt 155  Q
    ||||||||||||||||| ||||||||| ||| | | |||||||| ||||||||| ||||||||||| |||||||    
T  44100913 gtgacactcatcttatacgaaggaattcgatgtgagaacttatatagttgattcggcataatacatattgtttt 44100840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 20758659 - 20758704
Alignment:
Q  21 gttatcacatcgaattccttcatataagacgagtcatcacataaag 66  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||    
T  20758659 gttatcacatcgaattccctcatataagatgagtcatcacataaag 20758704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 20765050 - 20765095
Alignment:
Q  21 gttatcacatcgaattccttcatataagacgagtcatcacataaag 66  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||    
T  20765050 gttatcacatcgaattccctcatataagatgagtcatcacataaag 20765095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 23620597 - 23620644
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaag 66  Q
    |||||||||||||||||||  |||||||||||||||| ||||||||||    
T  23620597 atgttatcacatcgaattctctcatataagacgagtcgtcacataaag 23620644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 21411410 - 21411344
Alignment:
Q  92 tcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaa 158  Q
    |||||||||| |||||||||| | || || |||| ||||||||||| | ||||||||||||||||||    
T  21411410 tcttatatgagggaatttgatgtgatgacatatatagttgattctggagaatacatgttgttttgaa 21411344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 21412035 - 21412101
Alignment:
Q  92 tcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaa 158  Q
    |||||||||| |||||||||| | || || |||| ||||||||||| | ||||||||||||||||||    
T  21412035 tcttatatgagggaatttgatgtgatgacatatatagttgattctggagaatacatgttgttttgaa 21412101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 4911031 - 4911076
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataa 64  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||    
T  4911031 atgttatcacatcaaattctctcatataagacgagtcatcacataa 4911076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 10315234 - 10315315
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| ||||||||||| ||||||||| | ||||| |||  |||||||| ||||||||||||  ||||||||| ||| |||||    
T  10315234 actcgtcttatatgaatgaatttgatgtgataacatatctagttgattatgcataatacattgtgttttgaatggaccaata 10315315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 17291844 - 17291787
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaa 226  Q
    ||||| |||||||||||| || ||||  |||||||||||||| |||||||||||||||    
T  17291844 gaagcatatgctaacactgaataaatcagtcattgtttcaaacctacaccataaaaaa 17291787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 23620632 - 23620567
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    |||| ||||||||||  ||||| ||| | ||||| |||| ||||||||||||||||||||||||||    
T  23620632 actcgtcttatatgagagaattcgatgtgataacatatatagttgattctgcataatacatgttgt 23620567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 49791333 - 49791276
Alignment:
Q  111 atatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  49791333 atatgataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 49791276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 18413226 - 18413286
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacat 147  Q
    |||| |||||||||| |||||||||| | ||||| |||| |||||||| ||||||||||||    
T  18413226 actcgtcttatatgagggaatttgatgtgataacatatatagttgattttgcataatacat 18413286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 49423139 - 49423087
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  49423139 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 49423087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 49816855 - 49816800
Alignment:
Q  95 tatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgtt 150  Q
    |||||||||||||||||| | ||||| |||  |||||||| |||||||||||||||    
T  49816855 tatatgaaggaatttgatgtgataacatatgtagttgattatgcataatacatgtt 49816800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 12227268 - 12227338
Alignment:
Q  82 gtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    ||||||||||||||||| ||||||||| ||| | | ||| |||| ||||||||| ||| |||||| |||||    
T  12227268 gtgacactcatcttatacgaaggaattcgatgtgaaaacatatatagttgattcggcagaatacaagttgt 12227338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 17054831 - 17054785
Alignment:
Q  122 tatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  17054831 tatatagttgaatatgcataatacatgttgttttgaatggaacaata 17054785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 20758692 - 20758630
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgt 149  Q
    ||||||||||||||| |||||| ||| | |||||||||| |||||||| || | |||||||||    
T  20758692 actcatcttatatgagggaattcgatgtgataacttatagagttgattttgtagaatacatgt 20758630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 20765083 - 20765021
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgt 149  Q
    ||||||||||||||| |||||| ||| | |||||||||| |||||||| || | |||||||||    
T  20765083 actcatcttatatgagggaattcgatgtgataacttatagagttgattttgtagaatacatgt 20765021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 42420931 - 42420873
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    |||| |||||| |||||| ||||||| |  |||||||||||||||||| ||||||||||    
T  42420931 gaagtgtatgcaaacactgaacaaatcgaccattgtttcaaatctacatcataaaaaat 42420873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 49816828 - 49816866
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcat 57  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  49816828 atgttatcacatcaaattccttcatatatgacgagtcat 49816866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 2773829 - 2773881
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||||||||||||||  ||||||||    
T  2773829 ataacatatatagttgaatatgcataatacatgttgttttgaatagaacaata 2773881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 4784743 - 4784711
Alignment:
Q  136 tgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||||||||||||||||||||| |||||||||    
T  4784743 tgcataatacatgttgttttgaatggaacaata 4784711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 25763393 - 25763445
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  25763393 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 25763445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 34152669 - 34152617
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  34152669 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 34152617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 42887095 - 42887147
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||| ||||||||||||||| |||||||||    
T  42887095 ataacatatatagttgaatatgcataacacatgttgttttgaatggaacaata 42887147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 44559710 - 44559658
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  44559710 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 44559658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 49571924 - 49571976
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  49571924 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 49571976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 51427584 - 51427532
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| ||| |||||    
T  51427584 ataacatatatagttgaatatgcataatacatgttgttttgaatggagcaata 51427532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 31991604 - 31991737
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  31991604 atgttatcacatcgaattccctcatataagacgagtcatcacataaagaatgaggtgcattccatgacactcatcttatatgaaggaattcgatatcata 31991703  T
Q  119 acttatacagttgattctgcataatacatgttgt 152  Q
    ||||||| ||||||||||||||||||||||||||    
T  31991704 acttatatagttgattctgcataatacatgttgt 31991737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 20148884 - 20148744
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  20148884 atgttatcacatcaaattcctttatataagatgagtcatcacataaagactgaggtgcattccgtggcactcatcttatatgaaggaattcaatatcata 20148785  T
Q  119 acttatacagttgattctgcataatacatgttgttttgaaa 159  Q
    | ||||| || ||||||||||||||||||||||| ||||||    
T  20148784 atttatatagctgattctgcataatacatgttgtcttgaaa 20148744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 16708146 - 16708015
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| ||||| |||    
T  16708146 atgttatcacatcaaattcattcatataagacgagtcatcacataaagaccgaggtgcattccgtgacaatcatcttatatgaaggaattcgatattata 16708047  T
Q  119 acttatacagttgattctgcataatacatgtt 150  Q
    ||||||| || |||||||  ||||||||||||    
T  16708046 acttatatagctgattctcaataatacatgtt 16708015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 16708596 - 16708465
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||||||  || ||||||||| |||||||||||||| ||||||||||| |||||||||    
T  16708596 atgttatctcatcaaattcattcatataagacgagtcatcacataaagaccgatgtgcattccatgacactcatcttacatgaaggaattcgatatcata 16708497  T
Q  119 acttatacagttgattctgcataatacatgtt 150  Q
    ||||||| || |||||||  ||||||||||||    
T  16708496 acttatatagctgattctcaataatacatgtt 16708465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 15891401 - 15891541
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| |||||| || ||||||| || |||||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  15891401 atgttatcacatcaaattccctcgtataagaggaatcatcacatatagaatgaggtccattccgtgacactcatcttatatgaaggaattcaatatcata 15891500  T
Q  119 acttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||         |||||||| ||||||||||||||||||||||||||||    
T  15891501 actt---------attctgcaaaatacatgttgttttgaaaggaacaata 15891541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 27650168 - 27650239
Alignment:
Q  70 gaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcata 141  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| || ||||||||||||    
T  27650168 gaggtgcattccgtgacactcatcttatatgaaggaattcaatatcataacttatatagctgattctgcata 27650239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 15891431 - 15891355
Alignment:
Q  92 tcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||||| || |||||||||| | ||||| |||| || ||||||||| |||||||||||||||||| ||||||||||    
T  15891431 tcttatacgagggaatttgatgtgataacatatatagatgattctgcctaatacatgttgttttgataggaacaata 15891355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 31992256 - 31992314
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    |||| |||||| |||||||||||||| |||| |||||||||| ||||||||||||||||    
T  31992256 gaagtgtatgcaaacactaaacaaatcggtcgttgtttcaaacctacaccataaaaaat 31992314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 26617796 - 26617854
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    ||||||||||| |||||| |||||||  | |||||||| ||||||||||||||||||||    
T  26617796 gaagcgtatgcaaacactgaacaaatcagccattgtttgaaatctacaccataaaaaat 26617854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 27650747 - 27650793
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctac 215  Q
    |||||||| ||||||||| ||||||||||||||||||||||| ||||    
T  27650747 gaagcgtaggctaacactgaacaaattggtcattgtttcaaacctac 27650793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 18878934 - 18878861
Alignment:
Q  79 tccgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    ||||||||||||||| |||||||||||||| ||| | | ||| |||| ||  ||||||||| ||||||||||||    
T  18878934 tccgtgacactcatcatatatgaaggaattcgatgtgaaaacctatatagcagattctgcagaatacatgttgt 18878861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 2918750 - 2918698
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  2918750 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 2918698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 24108179 - 24108127
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  24108179 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 24108127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 34521138 - 34521086
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  34521138 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 34521086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 40676803 - 40676751
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  40676803 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 40676751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 43492278 - 43492330
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  43492278 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 43492330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 15891967 - 15892021
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaa 223  Q
    |||||||| || |||||| || |||| ||||||||||||||| ||||||||||||    
T  15891967 gaagcgtacgcaaacactgaataaatcggtcattgtttcaaacctacaccataaa 15892021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 10359595 - 10359543
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  10359595 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 10359543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 17538325 - 17538273
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  17538325 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 17538273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 23408540 - 23408592
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  23408540 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 23408592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 37312050 - 37311998
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||| ||||||||||||||||| |||||||||    
T  37312050 ataacatatatagttgaatatgcatgatacatgttgttttgaatggaacaata 37311998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 20241875 - 20242024
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| |    
T  20241875 atgttatcacatcgaattccctcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaagaaattctatatcaaa 20241974  T
Q  119 acttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    || |||| || ||||||||||| |||||||||||||||||||||||||||    
T  20241975 acatatatagctgattctgcatgatacatgttgttttgaaaggaacaata 20242024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 22135859 - 22136008
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| |    
T  22135859 atgttatcacatcgaattccctcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaagaaattctatatcaaa 22135958  T
Q  119 acttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    || |||| || ||||||||||| |||||||||||||||||||||||||||    
T  22135959 acatatatagctgattctgcatgatacatgttgttttgaaaggaacaata 22136008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 22143212 - 22143361
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| |    
T  22143212 atgttatcacatcgaattccctcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaagaaattctatatcaaa 22143311  T
Q  119 acttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    || |||| || ||||||||||| |||||||||||||||||||||||||||    
T  22143312 acatatatagctgattctgcatgatacatgttgttttgaaaggaacaata 22143361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 14482571 - 14482720
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  14482571 atgttttcacatcgaatttcttcatataagacgagtcatcacataaagaatgaggtgcattctatgacactcatcttatatgaaggaattcgatatcata 14482670  T
Q  119 acttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||||| || |||||  ||||||||||||||||| ||||||||||||||    
T  14482671 acttatatagctgatttggcataatacatgttgttctgaaaggaacaata 14482720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 23911504 - 23911364
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  23911504 atgttatcacatcaaattccttcgtataagacgagtcatcacataaagaatgaggtgcatttcgtgacactcatcttatatgaaggaattcgatatcata 23911405  T
Q  119 acttatacagttgattctgcataatacatgttgttttgaaa 159  Q
    | ||||| || ||||| ||||||||||||||||||||||||    
T  23911404 atttatatagatgattatgcataatacatgttgttttgaaa 23911364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 17464970 - 17465092
Alignment:
Q  28 catcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataacttataca 127  Q
    ||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  17464970 catcgaattccctcatataatatgagtcatcacataatgaatgaggtgcattccgtgacactcatcttatatgaaggaattcgatatcataacttatata 17465069  T
Q  128 gttgattctgcataatacatgtt 150  Q
    | |||||||||||||||||||||    
T  17465070 ggtgattctgcataatacatgtt 17465092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 20241910 - 20241829
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||||||| |||||| ||| | ||||| |||| || ||||| |||||||||||||||||||||||||||||||||    
T  20241910 actcgtcttatatgagggaattcgatgtgataacatatatagatgattgtgcataatacatgttgttttgaaaggaacaata 20241829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 22135894 - 22135813
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||||||| |||||| ||| | ||||| |||| || ||||| |||||||||||||||||||||||||||||||||    
T  22135894 actcgtcttatatgagggaattcgatgtgataacatatatagatgattgtgcataatacatgttgttttgaaaggaacaata 22135813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 22143247 - 22143166
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||||||| |||||| ||| | ||||| |||| || ||||| |||||||||||||||||||||||||||||||||    
T  22143247 actcgtcttatatgagggaattcgatgtgataacatatatagatgattgtgcataatacatgttgttttgaaaggaacaata 22143166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 14482606 - 14482524
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatg-ttgttttgaaaggaacaata 168  Q
    |||| |||||||||||| |||| ||| | | ||| |||| |||||||||||||||||||||| |||||||||| |||||||||    
T  14482606 actcgtcttatatgaagaaattcgatgtgaaaacatatatagttgattctgcataatacatgtttgttttgaatggaacaata 14482524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 20242451 - 20242505
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaa 223  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||||    
T  20242451 gaagcgtatgcaaacactgaacaaatcggtcattgtttcaaacctacaccataaa 20242505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 22136435 - 22136489
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaa 223  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||||    
T  22136435 gaagcgtatgcaaacactgaacaaatcggtcattgtttcaaacctacaccataaa 22136489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 20244605 - 20244535
Alignment:
Q  82 gtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    ||||||||||||||||| |||||| |||| | | | ||| |||||||||||||| ||| ||||||||||||    
T  20244605 gtgacactcatcttatacgaaggactttggtgtgaaaacatatacagttgattcggcagaatacatgttgt 20244535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 22138589 - 22138519
Alignment:
Q  82 gtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    ||||||||||||||||| |||||| |||| | | | ||| |||||||||||||| ||| ||||||||||||    
T  22138589 gtgacactcatcttatacgaaggactttggtgtgaaaacatatacagttgattcggcagaatacatgttgt 22138519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 28051772 - 28051739
Alignment:
Q  47 agacgagtcatcacataaagaatgaggtgcattc 80  Q
    ||||||||||||||||||||||||||||||||||    
T  28051772 agacgagtcatcacataaagaatgaggtgcattc 28051739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 33718955 - 33718914
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaa 210  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  33718955 gaagcgtatgctaacactgaacaaatcggtcattgtttcaaa 33718914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 12397605 - 12397657
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  12397605 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 12397657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 17465592 - 17465648
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaa 225  Q
    |||||| |||| |||||| ||||||| ||||||||||||||| ||| ||||||||||    
T  17465592 gaagcggatgcaaacactgaacaaatcggtcattgtttcaaacctataccataaaaa 17465648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 32027008 - 32026956
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  32027008 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 32026956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 32037067 - 32037015
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  32037067 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 32037015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 7821407 - 7821453
Alignment:
Q  122 tatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  7821407 tatatagttgaatatgcataatacatgttgttttgaatggaacaata 7821453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 14483125 - 14483166
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaa 210  Q
    |||||||||||||||| | ||||||| |||||||||||||||    
T  14483125 gaagcgtatgctaacaatgaacaaatcggtcattgtttcaaa 14483166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 21864390 - 21864431
Alignment:
Q  25 tcacatcgaattccttcatataagacgagtcatcacataaag 66  Q
    |||||||||||| | |||||||||| ||||||||||||||||    
T  21864390 tcacatcgaattacctcatataagatgagtcatcacataaag 21864431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 34132449 - 34132420
Alignment:
Q  197 gtcattgtttcaaatctacaccataaaaaa 226  Q
    ||||||||||||||||||||||||||||||    
T  34132449 gtcattgtttcaaatctacaccataaaaaa 34132420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 4495710 - 4495762
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||||||||||||||  ||||||||    
T  4495710 ataacatatatagttgaatatgcataatacatgttgttttgaattgaacaata 4495762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 6463836 - 6463967
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6463836 atgttatcacatcaaattccttcatataagacgagtcatcacataaagaataaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 6463935  T
Q  119 acttatacagttgattctgcataatacatgtt 150  Q
    ||||||| || |||||||  ||||||||||||    
T  6463936 acttatatagctgattctcaataatacatgtt 6463967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 6754933 - 6754818
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  6754933 atgttatcacatcaaattccttcatataagacgagtcatcacataaagaataaggtgcattctgtgacactcatcttatatgaaggaatttgatatcata 6754834  T
Q  119 acttatacagttgatt 134  Q
    ||||||| || |||||    
T  6754833 acttatatagctgatt 6754818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 20375369 - 20375467
Alignment:
Q  22 ttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataac 120  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  20375369 ttatcacatcaaattccctcatataagacgagtcatcacataaagaatgaggtgcatttcgtgacactcatcttatatgaaggaattcgatatcataac 20375467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 25887094 - 25887198
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||    
T  25887094 atgttatcacatcaaattcaatcatataagacgagtcatcacataaagaatgagttgcattctgtgacactcatcttatatgaaggaattcgatatcata 25887193  T
Q  119 actta 123  Q
    |||||    
T  25887194 actta 25887198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 14265751 - 14265669
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatga 101  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  14265751 atgttatcacatcgaattccctcaaataagacgagtcattacataaagaatgaggtccatttcgtgacactcatcttatatga 14265669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 25887129 - 25887048
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| ||||||||||  ||||||||| | ||||| |||| |||||||| ||||||||||||||||||||||| |||||||||    
T  25887129 actcgtcttatatgattgaatttgatgtgataacatatatagttgattttgcataatacatgttgttttgaatggaacaata 25887048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 7955269 - 7955224
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataa 64  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  7955269 atgttatcacatcaaattccttcatataagacgagtcatcacataa 7955224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 14265716 - 14265797
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||| ||| |||||| ||| | ||||| |||| ||||||||||||||||||||||||||||||||  ||||||||    
T  14265716 actcgtcttatttgagggaattcgatgtgataacatatatagttgattctgcataatacatgttgttttgaagtgaacaata 14265797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 20375401 - 20375320
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||||||| |||||||||| | ||||  |||| |||||||| ||||| ||||||||||||||||| |||||||||    
T  20375401 actcgtcttatatgagggaatttgatgtgataatatatatagttgattttgcatgatacatgttgttttgaatggaacaata 20375320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 27187894 - 27187946
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||||||| ||||||||||||||||||||| |||||||||    
T  27187894 ataacatatatagttgattctacataatacatgttgttttgaatggaacaata 27187946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 46413701 - 46413649
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  46413701 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 46413649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 20409554 - 20409621
Alignment:
Q  85 acactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    ||||||||| |||| ||||||||| ||| | | |||||||| ||||||||| ||| ||||||||||||    
T  20409554 acactcatcctatacgaaggaattcgatgtgaaaacttatatagttgattcggcagaatacatgttgt 20409621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 14632274 - 14632326
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  14632274 ataacgtatatagttgaatatgcataatacattttgttttgaatggaacaata 14632326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 25888022 - 25887982
Alignment:
Q  128 gttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||||||| |||||||||||| |||||||| |||||||||    
T  25888022 gttgattctacataatacatgtggttttgaatggaacaata 25887982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 29787891 - 29787831
Alignment:
Q  89 tcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgt 149  Q
    |||||||||||||||||||||||| | | ||| |||| ||||||||| | | |||||||||    
T  29787891 tcatcttatatgaaggaatttgatgtgagaacctatatagttgattcggtagaatacatgt 29787831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 34471471 - 34471419
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| ||||||||||| | ||| |||||||| |||||||||| |||||||||    
T  34471471 ataacatatacagttgaatatgcgtaatacattttgttttgaatggaacaata 34471419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 34646605 - 34646553
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||||||||||| || |||||||||    
T  34646605 ataacatatatagttgaatatgcataatacatgttgttttaaatggaacaata 34646553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 41578743 - 41578795
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  41578743 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 41578795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 43570699 - 43570751
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  43570699 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 43570751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 49274241 - 49274293
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  49274241 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 49274293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 51016093 - 51016145
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||| ||||||||||| |||||||||    
T  51016093 ataacatatatagttgaatatgcataatacaagttgttttgaatggaacaata 51016145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 13130759 - 13130888
Alignment:
Q  23 tatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataactt 122  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  13130759 tatcacatcaaatttcctcatataagacgagtcatcacataaagaatgaggtgcattctgtgacactaatcttatatgaaggaatttgatatcataactt 13130858  T
Q  123 atacagttgattctgcataatacatgttgt 152  Q
    ||| ||||||||||||||||||||||||||    
T  13130859 atatagttgattctgcataatacatgttgt 13130888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 12743731 - 12743612
Alignment:
Q  49 acgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatg 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||| |||||||||||||    
T  12743731 acgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaattcgatatcataacgtatatagctgattttgcataatacatg 12743632  T
Q  149 ttgttttgaaaggaacaata 168  Q
    ||||||||||||||||||||    
T  12743631 ttgttttgaaaggaacaata 12743612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 12806552 - 12806433
Alignment:
Q  49 acgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatg 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||| |||||||||||||    
T  12806552 acgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaattcgatatcataacgtatatagctgattttgcataatacatg 12806453  T
Q  149 ttgttttgaaaggaacaata 168  Q
    ||||||||||||||||||||    
T  12806452 ttgttttgaaaggaacaata 12806433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 18921247 - 18921118
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  18921247 atgttatcacatcgatttccctcatataagacgagtaatcacatagagaatgaggtgcattctgtgacactcatcttatatgaaggaattcaatatcata 18921148  T
Q  119 acttatacagttgattctgcataatacatg 148  Q
    ||||||| || |||||||||||||||||||    
T  18921147 acttatatagctgattctgcataatacatg 18921118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 10398506 - 10398375
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| ||||| |||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  10398506 atgttatcacatcaaattcattcaaataagacgagtgatcacataaagattgaggtgcatttcgtgacactcatcttatatgaaggaattcgatatcata 10398407  T
Q  119 acttatacagttgattctgcataatacatgtt 150  Q
    ||||||| ||||||||||  ||||||||||||    
T  10398406 acttatatagttgattctcaataatacatgtt 10398375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 17366239 - 17366353
Alignment:
Q  35 ttccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgatt 134  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| || | |||    
T  17366239 ttccttcatataagacgagtaatcacataaa-actgaggtgcattccgtgacactcatcgtatatgaaggaattcgatatcataatttatatagctaatt 17366337  T
Q  135 ctgcataatacatgtt 150  Q
    ||  ||||||||||||    
T  17366338 ctcaataatacatgtt 17366353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 12743348 - 12743278
Alignment:
Q  98 atgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||||||||| ||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||    
T  12743348 atgaaggaattcgatatcataacgtatatagctgattttgcataatacatgttgttttgaaaggaacaata 12743278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 12806167 - 12806097
Alignment:
Q  98 atgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||||||||| ||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||    
T  12806167 atgaaggaattcgatatcataacgtatatagctgattttgcataatacatgttgttttgaaaggaacaata 12806097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 36311670 - 36311752
Alignment:
Q  70 gaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    |||||| |||| |||||||| |||||||| |||||||||||||||||||||||||| |  ||||| |||| ||||||||||||    
T  36311670 gaggtgaattctgtgacactaatcttatacgaaggaatttgatatcataacttatataactgattatgcagaatacatgttgt 36311752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 19747937 - 19747892
Alignment:
Q  181 aacactaaacaaattggtcattgtttcaaatctacaccataaaaaa 226  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  19747937 aacactgaacaaattggtcattgtttcaaatctacaccataaaaaa 19747892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 33371607 - 33371562
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataa 64  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  33371607 atgttatcacatcaaattccttcatataagacgagtcatcacataa 33371562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 36311520 - 36311567
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaag 66  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  36311520 atgttatgacatcgaattccttcatataagatgagtcatcacataaag 36311567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 13131405 - 13131459
Alignment:
Q  173 cgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    ||||||| |||||| |||||||  |||||||||||||||||||||||||||||||    
T  13131405 cgtatgcaaacactgaacaaatcagtcattgtttcaaatctacaccataaaaaat 13131459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 25360922 - 25360968
Alignment:
Q  181 aacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  25360922 aacactgaacaaatcggtcattgtttcaaatctacaccataaaaaat 25360968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 36312276 - 36312329
Alignment:
Q  174 gtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    ||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||    
T  36312276 gtatgctaacactgaacaaatcgatcattgtttcaaacctacaccataaaaaat 36312329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 15798407 - 15798465
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    ||||||||||| |||| | |||||||  | |||||||||||||||||||||||||||||    
T  15798407 gaagcgtatgcaaacattgaacaaatcagccattgtttcaaatctacaccataaaaaat 15798465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 36311555 - 36311493
Alignment:
Q  87 actcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgt 149  Q
    |||||||||||||||||||||| ||| ||||||| |||| |||||||| || | |||||||||    
T  36311555 actcatcttatatgaaggaattcgatgtcataacatatatagttgattttgtagaatacatgt 36311493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 1695609 - 1695661
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  1695609 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 1695661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 4723462 - 4723410
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  4723462 ataacatatatagttgaatatgcataatacatgttgttttgaacggaacaata 4723410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 34683313 - 34683261
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  34683313 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 34683261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 36349721 - 36349669
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  36349721 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 36349669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 2599597 - 2599559
Alignment:
Q  130 tgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  2599597 tgattatgcataataaatgttgttttgaaaggaacaata 2599559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 23228231 - 23228269
Alignment:
Q  25 tcacatcgaattccttcatataagacgagtcatcacata 63  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  23228231 tcacatcgaattccctcatataagatgagtcatcacata 23228269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 12067915 - 12067960
Alignment:
Q  173 cgtatgctaacactaaacaaattggtcattgtttcaaatctacacc 218  Q
    ||||||| |||||||||||||| || ||||||||||||| ||||||    
T  12067915 cgtatgcaaacactaaacaaatcggccattgtttcaaatttacacc 12067960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 1972186 - 1972238
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  1972186 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 1972238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 6792859 - 6792807
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  6792859 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 6792807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 18309083 - 18309135
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  18309083 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 18309135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 35566095 - 35566147
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||| ||||||||||||||| |||||||||    
T  35566095 ataacatatatagttgaatatgcataacacatgttgttttgaatggaacaata 35566147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 18843170 - 18843041
Alignment:
Q  21 gttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataac 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  18843170 gttatcacatcaaattccttcatataagacgagtcatcacataaagactgaggtgcattccgtgacactcatcttatatgaagaaattcgatatcataac 18843071  T
Q  121 ttatacagttgattctgcataatacatgtt 150  Q
    ||| | || ||||| |  ||||||||||||    
T  18843070 ttacatagctgattttcaataatacatgtt 18843041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 5766206 - 5766080
Alignment:
Q  22 ttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataact 121  Q
    ||||||| || |||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||  ||||||||||||||| ||||||||||||    
T  5766206 ttatcacctcaaattccttcatataagacgagtaatcacataaagactgaggtgcattctgtgacactca--ttatatgaaggaattcgatatcataact 5766109  T
Q  122 tatacagttgattctgcataatacatgtt 150  Q
    |||| ||||||||||  ||||||||||||    
T  5766108 tatatagttgattctcaataatacatgtt 5766080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 16531580 - 16531711
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||||||| |||||| |||||||||| | | |||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||    
T  16531580 atgttatcacatcaaattccctcatataagatgggccatcacataaagaatgaggtgcattctgtggcactcatcttatatcaaggaattcgatatcata 16531679  T
Q  119 acttatacagttgattctgcataatacatgtt 150  Q
    | ||||| || |||||||  ||||||||||||    
T  16531680 atttatatagctgattctcaataatacatgtt 16531711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 16531612 - 16531534
Alignment:
Q  90 catcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||||||||||| |||||||||| | ||||| |||| |||||||| || |||||||||||| ||||||| |||||||||    
T  16531612 catcttatatgagggaatttgatgtgataacatatatagttgattttgtataatacatgttattttgaatggaacaata 16531534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 15471409 - 15471352
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaa 226  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||    
T  15471409 gaagcgtatgcaaacactgaacaaatcggtcattgtttcaaatctacagcataaaaaa 15471352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 11788762 - 11788809
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaag 66  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  11788762 atgttatcacatcgaatcccttcatataagatgagtcatcacagaaag 11788809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 12790664 - 12790612
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  12790664 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 12790612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 19262193 - 19262265
Alignment:
Q  80 ccgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    |||||||||||||| || | ||| ||||||||| | | ||| |||| ||||||||||||| ||||||||||||    
T  19262193 ccgtgacactcatcctaaacgaatgaatttgatgtgaaaacctatatagttgattctgcagaatacatgttgt 19262265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 40532796 - 40532744
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  40532796 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 40532744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 27574855 - 27574898
Alignment:
Q  25 tcacatcgaattccttcatataagacgagtcatcacataaagaa 68  Q
    |||||||||||||  |||||||||| ||||||||||||||||||    
T  27574855 tcacatcgaattctctcatataagatgagtcatcacataaagaa 27574898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 31452067 - 31452122
Alignment:
Q  170 aagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaa 225  Q
    |||||||||| |||||| ||||||| |||| ||||||||||  |||||||||||||    
T  31452067 aagcgtatgcaaacactgaacaaatcggtcgttgtttcaaacatacaccataaaaa 31452122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 14772855 - 14772901
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctac 215  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  14772855 gaagcgtatgcaaacactgaacaaatcggtcattgtttcaaacctac 14772901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 35185804 - 35185850
Alignment:
Q  122 tatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  35185804 tatatagttgaatatgcataatacatgttgttttgaatggaacaata 35185850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 37778952 - 37778998
Alignment:
Q  122 tatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  37778952 tatatagttgaatatgcataatacatgttgttttgaatggaacaata 37778998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 6436537 - 6436589
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  6436537 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 6436589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 14173139 - 14173087
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||| ||||||||||||||||| |||||||||    
T  14173139 ataacatatatagttgaatatgcatgatacatgttgttttgaatggaacaata 14173087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 23343465 - 23343517
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| | |||||||    
T  23343465 ataacatatatagttgaatatgcataatacatgttgttttgaatgaaacaata 23343517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 35525578 - 35525526
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||| ||||||| |||||||||    
T  35525578 ataacatatatagttgaatatgcataatacatgttattttgaatggaacaata 35525526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 35586304 - 35586252
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||| ||| |||||||||    
T  35586304 ataacatatatagttgaatatgcataatacatgttgtttggaatggaacaata 35586252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 4230219 - 4230130
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatt 108  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  4230219 atgttatcacatcgaattccctcatataagacgagtcatcgcataaagaatgaggtccattctgtgacactcatcttatatgaaggaatt 4230130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 1642080 - 1642207
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||| ||| |||||| |||||||||||| ||||||||||||| | ||| |||||||| ||  |||||||||||||||||||||||||||||||||    
T  1642080 atgttatcatatcaaattccctcatataagacgggtcatcacataaaaagtgatgtgcattctgttgcactcatcttatatgaaggaatttgatatcata 1642179  T
Q  119 acttatacagttgattctgcataataca 146  Q
    ||||||| || |||||||  ||||||||    
T  1642180 acttatatagctgattctcaataataca 1642207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 18150039 - 18149906
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgacactcatcttatatgaaggaatttgatatcata 118  Q
    ||||||||| || ||||||| || ||||| |||||||||||||||||||||||||||||||| |||||  || ||||||||| ||||||| |||||||||    
T  18150039 atgttatcaaattgaattccgtcttataaaacgagtcatcacataaagaatgaggtgcattctgtgactttcctcttatatggaggaattcgatatcata 18149940  T
Q  119 acttatacagttgattctgcataatacatgttgt 152  Q
    ||||||| ||   |||||| ||||||||||||||    
T  18149939 acttatatagcgaattctgtataatacatgttgt 18149906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 150549 - 150469
Alignment:
Q  70 gaggtgcattccgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgtt 150  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||||| |||||||||||||||    
T  150549 gaggtgcattccgtgacactcatcttatattaaggaattcgatatcataacttatattgttgattatgcataatacatgtt 150469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 3380373 - 3380441
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattccgtgaca 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3380373 atgttatcacatcgaattccctcatataagacgagtcatcacataaagcatgaggtgcattccgtgaca 3380441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 11825121 - 11825052
Alignment:
Q  83 tgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  11825121 tgacactcatcttatatgaagaaattcgatatcataacttatatagttgattctgcataatacatgttgt 11825052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 1642110 - 1642034
Alignment:
Q  92 tcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||| |||||||||    
T  1642110 tcttatatgagggaatttgatatgataacatatatagttgattctgcataatacatgtcgttttgaatggaacaata 1642034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 11826497 - 11826435
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaagaatgaggtgcattcc 81  Q
    |||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||||    
T  11826497 atgttatcacatcgaattacctcatataagatgagtcatcatataaagaatgaggtgcattcc 11826435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 21614011 - 21614056
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataa 64  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  21614011 atgttatcacatcaaattccttcatataagacgagtcatcacataa 21614056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 5281820 - 5281867
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcacataaag 66  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  5281820 atgttatcacatcgaattccttcatataaaatgagtcatcacaaaaag 5281867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 31267502 - 31267431
Alignment:
Q  81 cgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    |||||||||| ||||||| ||||||||| ||| | ||||| |||| || ||||| |||||||||||||||||    
T  31267502 cgtgacactcgtcttatacgaaggaattcgatgtgataacatatatagatgattatgcataatacatgttgt 31267431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 150699 - 150657
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagtcatcaca 61  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  150699 atgttatcacatcgaattccctcatataagacaagtcatcaca 150657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 3380996 - 3381054
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    ||||||||||| |||||| |||||||  |||||||||||||| |||||||| |||||||    
T  3380996 gaagcgtatgcaaacactgaacaaatcagtcattgtttcaaacctacaccaaaaaaaat 3381054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 7413994 - 7414064
Alignment:
Q  81 cgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttg 151  Q
    ||||||||||||| |||| ||||||||||||| | |||||||||| || | |||||| | |||||||||||    
T  7413994 cgtgacactcatcatatacgaaggaatttgatgtgataacttatatagctaattctgtagaatacatgttg 7414064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 28066685 - 28066611
Alignment:
Q  78 ttccgtgacactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    |||||||||||||||| ||||||||||||||  || | | ||| |||| |||||||| |||| ||||||||||||    
T  28066685 ttccgtgacactcatcctatatgaaggaattcaatgtgaaaacctatatagttgattttgcagaatacatgttgt 28066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 3380440 - 3380477
Alignment:
Q  115 cataacttatacagttgattctgcataatacatgttgt 152  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3380440 cataacttatatagttgattctgcataatacatgttgt 3380477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 31267461 - 31267496
Alignment:
Q  19 atgttatcacatcgaattccttcatataagacgagt 54  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31267461 atgttatcacatcgaattccttcgtataagacgagt 31267496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 11824577 - 11824531
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctac 215  Q
    |||||||||||||||||| |||||||  |||||||||||||| ||||    
T  11824577 gaagcgtatgctaacactgaacaaatcagtcattgtttcaaacctac 11824531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 12082815 - 12082757
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    ||||||||||| |||||| ||| |||   ||||||||||||| ||||||||||||||||    
T  12082815 gaagcgtatgcaaacactgaacgaatcaatcattgtttcaaacctacaccataaaaaat 12082757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 42735794 - 42735840
Alignment:
Q  122 tatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  42735794 tatatagttgaatatgcataatacatgttgttttgaatggaacaata 42735840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 149972 - 149923
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacacc 218  Q
    ||||||||| |||||||| ||||||| |||||||||||| || |||||||    
T  149972 gaagcgtatactaacactgaacaaatcggtcattgtttcgaacctacacc 149923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 12083646 - 12083605
Alignment:
Q  25 tcacatcgaattccttcatataagacgagtcatcacataaag 66  Q
    |||||||||||||| |||||||||| ||||||||||| ||||    
T  12083646 tcacatcgaattccctcatataagatgagtcatcacagaaag 12083605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 16651161 - 16651132
Alignment:
Q  25 tcacatcgaattccttcatataagacgagt 54  Q
    ||||||||||||||||||||||||||||||    
T  16651161 tcacatcgaattccttcatataagacgagt 16651132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 17625521 - 17625492
Alignment:
Q  25 tcacatcgaattccttcatataagacgagt 54  Q
    ||||||||||||||||||||||||||||||    
T  17625521 tcacatcgaattccttcatataagacgagt 17625492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 22291655 - 22291707
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  22291655 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 22291707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 41622905 - 41622957
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  41622905 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 41622957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 5233 - 5175
Alignment:
Q  169 gaagcgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||    
T  5233 gaagcgtacgcaaacacttaacaaattggtcattgtttcaaatctacaccataaaaaat 5175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 22441 - 22508
Alignment:
Q  85 acactcatcttatatgaaggaatttgatatcataacttatacagttgattctgcataatacatgttgt 152  Q
    |||||||||||||| ||||||||| ||| | | |||||||| |||||||||  |||||||||||||||    
T  22441 acactcatcttatacgaaggaattcgatgtgagaacttatatagttgattcgacataatacatgttgt 22508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 36544 - 36490
Alignment:
Q  173 cgtatgctaacactaaacaaattggtcattgtttcaaatctacaccataaaaaat 227  Q
    ||||||| || ||| ||||||| ||||||||||||||||||||| ||||||||||    
T  36544 cgtatgcaaaaactgaacaaatcggtcattgtttcaaatctacatcataaaaaat 36490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 107898 - 107837
Alignment:
Q  107 tttgatatcataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||||| | ||||| |||| |||||||| ||||||| ||||||||||||||| |||||||||    
T  107898 tttgatgtgataacatatatagttgattatgcataacacatgttgttttgaatggaacaata 107837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 26487265 - 26487317
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  26487265 ataacatatatagttgaatatgcataatacatgttgttttgaatggaacaata 26487317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 22842935 - 22842971
Alignment:
Q  25 tcacatcgaattccttcatataagacgagtcatcaca 61  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  22842935 tcacatcgaatcccttcatataagatgagtcatcaca 22842971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 17335 - 17289
Alignment:
Q  122 tatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    |||| |||||| | ||||||||||||||||||||||| |||||||||    
T  17335 tatatagttgaatatgcataatacatgttgttttgaatggaacaata 17289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 5099 - 5151
Alignment:
Q  116 ataacttatacagttgattctgcataatacatgttgttttgaaaggaacaata 168  Q
    ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||    
T  5099 ataacatatatagttgaatatgcataatacattttgttttgaatggaacaata 5151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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