View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5500-Insertion-1 (Length: 1080)
Name: NF5500-Insertion-1
Description: NF5500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5500-Insertion-1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Complemental strand, 781054 - 780575
Alignment:
| Q |
8 |
gatataggaaagctttgattgatatatgacatttgatgattttggtcctttatcatgaagaatggattttatgatttttaaagtgagtgcactttagagt |
107 |
Q |
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| T |
781054 |
gatataggaaagctttgattgatatatgacatttgatgattttggtcctttatcatgaagaatggattttatgatttttaaagtgagtgcactttagagt |
780955 |
T |
|
| Q |
108 |
gctccaaattcaatgcctctttcataagtcccatgttctactcaaaaagctccttacaatatgagtattccatccccactttcaaaggtgacatgttttc |
207 |
Q |
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| T |
780954 |
gctccaaattcaatgcctctttcataagtcccatgttatactcaaaaagctccttacaatatgagtattccatccccactttcaaaggtgacatgttttc |
780855 |
T |
|
| Q |
208 |
ttttctcattgtcaaccactaatttcattttaccnnnnnnnnnnattgggattctgtaactctactactcccaagaaataattttagaataaatcatcaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
780854 |
ttttctcattgtcaaccactaatttcattttaccttttttttttattgggattctgtaactctactactcccaagaaataattttagaataaatcctcaa |
780755 |
T |
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| Q |
308 |
tttgatttttaaagttatactatctctaatttaattccttttttctaatatatatagtttctcttcaatttaatttttaaattctacagtataaatataa |
407 |
Q |
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| T |
780754 |
tttgatttttaaagttatactatctctaatttaattccttttttctaatatatatagtttctcttcaatttaatttttaaattctacagtataaatataa |
780655 |
T |
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| Q |
408 |
taaatagttcgtgatgcgtataaaattattttaattcaatctctaaatcatacgaaaatccatcaatttaattcataacg |
487 |
Q |
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| T |
780654 |
taaatagttcgtgatgcgtataaaattattttaattcaatctctaaatcatacgaaaatccatcaatttaattcataacg |
780575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 169; Significance: 4e-90; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 590 - 790
Target Start/End: Original strand, 1 - 200
Alignment:
| Q |
590 |
agcagcggacgtatgtgatcggggggctgatgatgcacaaccagattggcatgagaagaagctcccaactttgcgagaaaatcagcacatttgtttcctt |
689 |
Q |
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| T |
1 |
agcagcggacgtatgtcatcggggggctgatgatgcacaaccagattggcatgagaagaagctcccaactttgcgagaaaatcagcacatttgtttcctt |
100 |
T |
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| Q |
690 |
ctcgtagcgtgtgatgaaagaaacacaccatcttgcagtagctgttcttgaatttcatgaattaggaccgcatagacgtggtaattggaggatgcatcct |
789 |
Q |
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| T |
101 |
ctcgtaacgtgtgatg-aagagacacaccatcctgcagtagctgttcttgaatttcatgaagtaggaccgcatagacgtggtaattgggggatgcatcct |
199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 570 - 861
Target Start/End: Original strand, 27779549 - 27779837
Alignment:
| Q |
570 |
ttccttgagcatctattctaagcagcggacgtatgtgatcggggggctgatgatgcacaaccagattggcatgagaagaagctcccaactttgcgagaaa |
669 |
Q |
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||||||||||||||| |||||||||||||| | || | || ||||| | ||||| ||||| ||||| | ||| |||||||||||||| |||||||| |
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| T |
27779549 |
ttccttgagcatctagcctaagcagcggacgaaggtcttgaggaggctggaggtgcacgaccaggttggcgtcagacgaagctcccaacttggcgagaaa |
27779648 |
T |
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| Q |
670 |
atcagcacatttgtttccttctcgtagcgtgtgatgaaagaaacacaccatcttgcagtagctgttcttgaatttcatgaattaggaccgcatagacgtg |
769 |
Q |
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| T |
27779649 |
atcaacacattggtttccttcacggagcgtgtgatg-aagagacccaccatcctgacaaagctgttcttgaatttcatgaagcagcaccgcgtagacgtg |
27779747 |
T |
|
| Q |
770 |
gtaattggaggatgcatcctttatcgtgttgatcggcaagcataggagtctgaatagcaagctacaggaagataacccatatcctttgccat |
861 |
Q |
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| T |
27779748 |
gtagttggagtatgattccttgatcgtattgat-agcaagaata-gagtctgaatagcaagctaccggggcaagacccatatcctttgccat |
27779837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 570 - 861
Target Start/End: Original strand, 25341773 - 25342061
Alignment:
| Q |
570 |
ttccttgagcatctattctaagcagcggacgtatgtgatcggggggctgatgatgcacaaccagattggcatgagaagaagctcccaactttgcgagaaa |
669 |
Q |
| |
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|||||||| |||||| |||||||||||||| | || || || |||||| | ||||| ||||||||||||| || |||||||||| ||| |||||||| |
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| T |
25341773 |
ttccttgaacatctagcctaagcagcggacgaaggtcatgaggaggctgaaggtgcacgaccagattggcatcagtcgaagctcccagcttggcgagaaa |
25341872 |
T |
|
| Q |
670 |
atcagcacatttgtttccttctcgtagcgtgtgatgaaagaaacacaccatcttgcagtagctgttcttgaatttcatgaattaggaccgcatagacgtg |
769 |
Q |
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|||||||||| ||||||||| || ||||||||||||| || | ||||||| || | || |||| |||||||||||||| | |||||||||||||| |
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| T |
25341873 |
gtcagcacattggtttccttcgcggagcgtgtgatgaa-gagatccaccatcctgaaaaagttgtttttgaatttcatgaagcaacaccgcatagacgtg |
25341971 |
T |
|
| Q |
770 |
gtaattggaggatgcatcctttatcgtgttgatcggcaagcataggagtctgaatagcaagctacaggaagataacccatatcctttgccat |
861 |
Q |
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| T |
25341972 |
atatttggagtatgattccttgatcgtattgat-agcaagaata-gagtctgaatagcaagctaccggggcaagacccatatcctttgccat |
25342061 |
T |
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