View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5500-Insertion-5 (Length: 376)

Name: NF5500-Insertion-5
Description: NF5500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5500-Insertion-5
NF5500-Insertion-5
[»] chr3 (1 HSPs)
chr3 (10-376)||(25072055-25072421)


Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 25072055 - 25072421
Alignment:
Q  10 tctccagatcaaggcactggaatttcagtgctccttatttggcattcccctgacatggattgaaataaaggaatatagaaaaagcatataatttagtact 109  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25072055 tctccagatcaaggcactggaatttcagtgttccttatttggcattcccctgacatggattgaaataaaggaatatagaaaaagcatatattttagtact 25072154  T
Q  110 tttaggcttggtttgtttaatgaaatcagattggaaatgttgagttttgatagctgaactcaccaaagtaaaactgtccatgatccagaaatagtggttt 209  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25072155 tttaggcttggtttgtttgttgaaatcagattggaaatgttgagttttgatagctgaactcaccaaagtaaaactgtccatgatccagaaatagtggttt 25072254  T
Q  210 aatcacctaggggtgtcattaatttaatgtattacatttactcgactccttacaaaccgaaccacaaagtttgattctgaaacaaatatatatgtacttt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25072255 aatcacctaggggtgtcattaatttaatgtattacatttactcgactccttacaaactgaaccacaaagtttgattctgaaacaaatatatatgtacttt 25072354  T
Q  310 tgaatgattgtctcaaatttaagtagtaatagtaaaaactttacaattttcaacattttgaaaagct 376  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25072355 tcaatgattgtctcaaatttaagtagtaatagtaaaaactttacaattttcaacattttgaaaagct 25072421  T

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