View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5501-Insertion-1 (Length: 707)
Name: NF5501-Insertion-1
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5501-Insertion-1 |
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| [»] chr4 (6 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 585; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 8 - 707
Target Start/End: Complemental strand, 30721060 - 30720348
Alignment:
| Q |
8 |
ttaggctcccgtagtcacgtcacggtgatcaaacatttacttctatttcatatttgatttactttttctaagacaaaatatccgtaaacactacaaaaca |
107 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
30721060 |
ttaggctcccgtagtcaagtcacggtgatcaaacatttacttgtatttcagatttgatttaccttttctaagacaaaatatccgtaaacactatgaaaca |
30720961 |
T |
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| Q |
108 |
tttttctaatatataaaagtatcacaatgaacttaatctcttcattgagtatttgtttattcaatagcacttgttgccgtgaaacaaaaagagaggatga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30720960 |
tttttctaatatataaaagtatcacaatgaacttaatctctttattgagtatttgtttattcaatagcacttgttgccgtgaaacaaaaagagag-atga |
30720862 |
T |
|
| Q |
208 |
ttgtgatttgtgatataatttatttgtaccaaaaaatgccttcagtaattagctagattcggacattcggtctcattcagaaaattgtcccagttacgtt |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30720861 |
ttgtgatttgtgatataatt-atttgtaccaaaaaatgccttcagtaattagctagattcggacattcggtctcattcagaaaattgtcacagttacgtt |
30720763 |
T |
|
| Q |
308 |
gaatagaaaattgtttttagcactacaaaattattaatataatacataattcatcattaacttacctataagtaccaaaacaaatatgggtaaaagcaca |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
30720762 |
gaatagaaaattgtttttagcactacaaaattattaatataatacataattcatcattaacttacctataaataccaaaaaaaatatgggtaaaagcaca |
30720663 |
T |
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| Q |
408 |
acacatctttctcacctttaactgataaatattaatcaacctgaagcaggtgttggttccaaattagtctcatcatttactaattaattacgatgactgc |
507 |
Q |
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| T |
30720662 |
acacatctttctcacctttaactgataaatattaatcaacctgaagcagttgttggttccaaattagtctcatcctttactaattaattacgatgactgc |
30720563 |
T |
|
| Q |
508 |
caataatcaattatatcatagcatttcattgtcattacttttatgtttgggattgtttgctattcaagtcacttctcgtactctacaag----------- |
596 |
Q |
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| T |
30720562 |
caataatcaattatatcatagcatttcattgtcattgcttttatgtttgggattgtttgctattcaagtcacttctcgtactctccaagatgactccaac |
30720463 |
T |
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| Q |
597 |
----atgagaagcatgagcaatggatgggtcactatggcaaagtctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaacgtaa |
692 |
Q |
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| T |
30720462 |
atatatgagaagcatgaacaatggatggttcactatggcaaagtctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaacgtaa |
30720363 |
T |
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| Q |
693 |
attacattgaagctt |
707 |
Q |
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||||||||||||||| |
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| T |
30720362 |
attacattgaagctt |
30720348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 486 - 707
Target Start/End: Original strand, 30891858 - 30892094
Alignment:
| Q |
486 |
actaattaattacgatgactgccaataatcaattatatcatagcatttcattgtcattacttttatgtttgggattgtttgctattcaagtcacttctcg |
585 |
Q |
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| T |
30891858 |
actaattaattaccatgactgccaataatcaattatatcatagcatttcattgtcattgcttttatgtttgggattgtttgctattcaagtcacttctcg |
30891957 |
T |
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| Q |
586 |
tactctacaag---------------atgagaagcatgagcaatggatgggtcactatggcaaagtctataaggatcttcaagaaagagagaatcgttta |
670 |
Q |
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| T |
30891958 |
tactctccaagatgactccatcatatatgagaagcatgaacaatggatggttcactatggcaaagtctataaggatcttcaagaaagagagaatcgttta |
30892057 |
T |
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| Q |
671 |
aagatattcaaagaaaacgtaaattacattgaagctt |
707 |
Q |
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| T |
30892058 |
aagatattcaaagaaaacgtaaattacattgaagctt |
30892094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 504 - 707
Target Start/End: Original strand, 30880793 - 30881011
Alignment:
| Q |
504 |
ctgccaataatcaattatatcatagcatttcattgtcattacttttatgtttgggattgtttgctattcaagtcacttctcgtactctacaagatga--- |
600 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30880793 |
ctgccaataatcaattatatcatagcatttcattggcattgtttttctgcttgggattgtttgctattcaagtcacttctcgtactctccaagatgactc |
30880892 |
T |
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| Q |
601 |
------------gaagcatgagcaatggatgggtcactatggcaaagtctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaac |
688 |
Q |
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| T |
30880893 |
catcatatatgagaagcatgaacaatggatggttcactatggcaaagtctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaac |
30880992 |
T |
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| Q |
689 |
gtaaattacattgaagctt |
707 |
Q |
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||||||||||||||||||| |
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| T |
30880993 |
gtaaattacattgaagctt |
30881011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 504 - 707
Target Start/End: Complemental strand, 16868369 - 16868160
Alignment:
| Q |
504 |
ctgccaataatcaattatatcatagcatttcattgtcattacttttatgtttgggattgtttgctattcaagtcacttctcgtactctacaagatgagaa |
603 |
Q |
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| T |
16868369 |
ctgccaataatcacttatatcata---tttcattggcattgcttctatgtttaggattgtttgctattcaagtcacttctcgcactctccaagatgacat |
16868273 |
T |
|
| Q |
604 |
gcatga---------gcaatggatgggtcactatggcaaagtctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaacgtaaat |
694 |
Q |
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| |||| |||||||||| |||| ||||| ||||| ||||||||| ||||||||| ||||| ||||| |||||||||| ||||| || ||| |
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| T |
16868272 |
gtatgagaggcaccggcaatggatgagtcaatatggtaaagtttataaggattctcaagaaagggagaaacgtttcaagatattcactgaaaatgtgaat |
16868173 |
T |
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| Q |
695 |
tacattgaagctt |
707 |
Q |
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| T |
16868172 |
tacattgaagctt |
16868160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 261 - 417
Target Start/End: Original strand, 30891694 - 30891849
Alignment:
| Q |
261 |
tagattcggacattcggtctcattcagaaaattgtcccagttacgttgaatagaaaattgtttttagcactacaaaattattaa---tataatacataat |
357 |
Q |
| |
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||||||| ||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||| |
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| T |
30891694 |
tagattcctacattgggtctcattcagaaaattctcagagttacgttgaattgaaaattgtttttagcac----aaattattaacataataatacttaat |
30891789 |
T |
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| Q |
358 |
tcatcattaacttacctataagtaccaaaacaaatatgggtaaaagcacaacacatcttt |
417 |
Q |
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| T |
30891790 |
tcatcattaacttgcctataaataccaaaaaaagtatgggtaaaagcacagcacttcttt |
30891849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 704
Target Start/End: Complemental strand, 44731896 - 44731789
Alignment:
| Q |
597 |
atgagaagcatgagcaatggatgggtcactatggcaaagtctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaacgtaaatta |
696 |
Q |
| |
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|||||| ||| |||||||||||| |||| ||| |||||||||||||||||| |||||||| ||| | ||| |||||||||| || ||| || ||||| |
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| T |
44731896 |
atgagaggcacgagcaatggatgagtcaatatagcaaagtctataaggatccacaagaaagggaggaacgtcacaagatattcacagcaaatgtgaatta |
44731797 |
T |
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| Q |
697 |
cattgaag |
704 |
Q |
| |
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|||||||| |
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| T |
44731796 |
cattgaag |
44731789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 504 - 707
Target Start/End: Original strand, 8898417 - 8898629
Alignment:
| Q |
504 |
ctgccaataatcaattatatcatagcatttcattgtcattacttttatgtttgggattgtttgctattcaagtcacttctcgtactctacaagatg---- |
599 |
Q |
| |
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|||| ||||||||||||||||||| |||||||| |||| |||| || |||||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
8898417 |
ctgctaataatcaattatatcata---tttcattggcattggttttctgcttgggattgtgggctattcaagtcacctctcgtactctccaagatggctc |
8898513 |
T |
|
| Q |
600 |
--------agaagcatgagcaatggatgggtcactatggcaaagtctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaacgta |
691 |
Q |
| |
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||| |||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||| ||||||| | |
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| T |
8898514 |
catgcatgagaggcatgagcggtggatgaatcactatggcaaagtctataaggatcatcaagaaagggagaagcgtttcaagatattcacagaaaacatg |
8898613 |
T |
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| Q |
692 |
aattacattgaagctt |
707 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
8898614 |
aaatacattgaagctt |
8898629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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