View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5501-Insertion-2 (Length: 695)

Name: NF5501-Insertion-2
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5501-Insertion-2
NF5501-Insertion-2
[»] chr1 (22 HSPs)
chr1 (250-695)||(29059131-29059573)
chr1 (8-222)||(29058889-29059103)
chr1 (8-220)||(29052122-29052331)
chr1 (530-583)||(4859085-4859138)
chr1 (526-584)||(12852204-12852262)
chr1 (546-584)||(51067916-51067954)
chr1 (530-579)||(35527924-35527973)
chr1 (528-584)||(12213994-12214050)
chr1 (530-582)||(39949815-39949867)
chr1 (527-585)||(10356717-10356776)
chr1 (545-584)||(35690213-35690252)
chr1 (530-584)||(4770634-4770688)
chr1 (546-580)||(4799164-4799198)
chr1 (527-581)||(4897171-4897225)
chr1 (530-584)||(11410628-11410682)
chr1 (530-584)||(26256095-26256149)
chr1 (530-584)||(41677596-41677650)
chr1 (527-580)||(2884451-2884504)
chr1 (539-584)||(47835730-47835775)
chr1 (527-559)||(24170143-24170175)
chr1 (359-395)||(29052482-29052518)
chr1 (530-586)||(34083336-34083392)
[»] chr4 (11 HSPs)
chr4 (538-580)||(15023007-15023049)
chr4 (527-584)||(11949666-11949723)
chr4 (527-580)||(12588843-12588896)
chr4 (531-584)||(18635531-18635584)
chr4 (527-584)||(18903761-18903818)
chr4 (527-584)||(30135141-30135198)
chr4 (527-584)||(38939537-38939594)
chr4 (529-589)||(46779133-46779193)
chr4 (546-584)||(7371570-7371608)
chr4 (527-584)||(4911604-4911660)
chr4 (527-584)||(14202482-14202539)
[»] chr6 (6 HSPs)
chr6 (527-584)||(9311933-9311990)
chr6 (533-587)||(10787642-10787695)
chr6 (531-580)||(20713104-20713153)
chr6 (527-575)||(8138461-8138509)
chr6 (528-589)||(24248161-24248222)
chr6 (530-582)||(2445302-2445354)
[»] chr3 (21 HSPs)
chr3 (527-584)||(40644631-40644688)
chr3 (545-591)||(39100437-39100483)
chr3 (528-584)||(3612186-3612242)
chr3 (536-584)||(11574254-11574302)
chr3 (545-584)||(38573594-38573633)
chr3 (546-584)||(10843803-10843841)
chr3 (530-584)||(17588363-17588417)
chr3 (530-584)||(22486684-22486738)
chr3 (530-584)||(23882831-23882885)
chr3 (546-584)||(47099057-47099095)
chr3 (530-584)||(53633623-53633677)
chr3 (527-580)||(2186430-2186483)
chr3 (527-580)||(21160057-21160110)
chr3 (527-584)||(35126272-35126329)
chr3 (530-579)||(41151468-41151517)
chr3 (527-584)||(52340525-52340582)
chr3 (527-584)||(54243386-54243443)
chr3 (527-579)||(1111844-1111896)
chr3 (527-583)||(17755123-17755179)
chr3 (527-583)||(19056443-19056499)
chr3 (544-584)||(48673867-48673907)
[»] chr2 (13 HSPs)
chr2 (539-579)||(11764390-11764430)
chr2 (530-584)||(27934863-27934917)
chr2 (541-588)||(10991539-10991586)
chr2 (545-583)||(11846399-11846437)
chr2 (551-585)||(31935831-31935865)
chr2 (539-584)||(8775271-8775316)
chr2 (527-584)||(10195665-10195722)
chr2 (531-584)||(16204824-16204877)
chr2 (527-580)||(17842715-17842768)
chr2 (527-584)||(41165436-41165493)
chr2 (546-586)||(5168601-5168641)
chr2 (548-584)||(9718395-9718431)
chr2 (530-582)||(12619347-12619399)
[»] chr8 (6 HSPs)
chr8 (527-574)||(9727349-9727396)
chr8 (530-584)||(19701350-19701404)
chr8 (527-575)||(3757960-3758008)
chr8 (531-584)||(17913934-17913987)
chr8 (527-584)||(28439960-28440017)
chr8 (527-583)||(29546895-29546951)
[»] chr5 (10 HSPs)
chr5 (525-584)||(36623175-36623234)
chr5 (539-583)||(10045334-10045378)
chr5 (527-575)||(16094067-16094115)
chr5 (545-580)||(42178826-42178861)
chr5 (530-584)||(23118057-23118111)
chr5 (530-575)||(2705522-2705567)
chr5 (527-580)||(5614770-5614823)
chr5 (527-584)||(13864345-13864402)
chr5 (546-587)||(31159427-31159468)
chr5 (527-584)||(36170056-36170113)
[»] chr7 (12 HSPs)
chr7 (527-584)||(24614696-24614753)
chr7 (527-584)||(34000263-34000320)
chr7 (541-585)||(15015241-15015285)
chr7 (546-584)||(429200-429238)
chr7 (530-580)||(31723410-31723460)
chr7 (545-583)||(46856083-46856121)
chr7 (527-584)||(5458074-5458131)
chr7 (527-584)||(5526726-5526783)
chr7 (527-584)||(25251511-25251568)
chr7 (527-584)||(37230031-37230088)
chr7 (527-584)||(43539107-43539164)
chr7 (546-586)||(32855519-32855559)
[»] scaffold0070 (1 HSPs)
scaffold0070 (546-582)||(42954-42990)
[»] scaffold1064 (1 HSPs)
scaffold1064 (527-584)||(652-709)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 250 - 695
Target Start/End: Original strand, 29059131 - 29059573
Alignment:
Q  250 tccattcacaaattatattgctcctttaggatttcttatacttagagattcaccataccaaatatacaaattgtaaaatatgtgtctccctnnnnnnnta 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||    
T  29059131 tccattcacaaattatattgctcctttaggatttcttatacttagagattcaccataccaaatatacaaattgtaaaatacgtgtctccctaaaaaaata 29059230  T
Q  350 taagatacctattgtggtagagaagcctttgggtaaaatgacatatatcatgttccatatacctttcatgctagtactaatatttaatatagccacttca 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059231 taagatacctattgtggtagagaagcctttgggtaaaatgacatatatcatgttccatatacctttcatgctagtactaatatttaatatagccacttca 29059330  T
Q  450 aagttcaataatctttatttacctaatcatgctataatttctaacctttgttttaggagcaccctctattttctatttttgaaccccagatcttatatat 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  29059331 aagttcaataatctttatttacctaatcatgctataatttctaacctttgttttaggagcaccctctattttctatatttgaatcctagatcttatatat 29059430  T
Q  550 attatgtattattcttatcaactgagttaagctcatgggacagcccagtgtgttttctaacttaatgattaagggattttaaggctatcatattcatatc 649  Q
    |||||| |||||||||| ||||||| |||||||||||||||| || |  ||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  29059431 attatgcattattcttaccaactgaattaagctcatgggacaaccta--gtgttttctaacttaatgattaa-ggattttaaggctatcacattcatatc 29059527  T
Q  650 atacatctgagataatgatatgaggactagacagtggatgtgtaga 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29059528 atacatctgagataatgatatgaggactagacagtggatgtgtaga 29059573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 29058889 - 29059103
Alignment:
Q  8 gtcaaacctcaagtttgaattccaaaatacacacacagggagaagccaaagatgattaatgctaataattcctagttacattaagaaataggactagtca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29058889 gtcaaacctcaagtttgaattccaaaatacacacacagggagaagccaaagatgattaatgctaataattcctagttacattaagaaataggactagtca 29058988  T
Q  108 aatgagcacatcactgacggtgaccaaaaaataattacttgtaagcctattgatagagggacagagacccttcaaaagagtgaattatgtagaattggtc 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29058989 aatgagcacctcactgacggtgaccaaaaaataattacttgtaagcctattgatagagggacagagacccttcaaaagagtgaattatgtagaattggtc 29059088  T
Q  208 agttatagattaggc 222  Q
    |||||||||||||||    
T  29059089 agttatagattaggc 29059103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 29052122 - 29052331
Alignment:
Q  8 gtcaaacctcaagtttgaattccaaaatacacacacagggagaagccaaagatgattaatgctaataattcctagttacattaagaaataggactagtca 107  Q
    |||||||| ||||||| ||||| |||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||      ||||||    
T  29052122 gtcaaaccccaagtttaaattcaaaaata-acacactgggcgaagccaaagatgattaatgctaataattccttgttacattaagaaa------tagtca 29052214  T
Q  108 aatgagcacatcactgacggtgaccaaaaaataattacttgtaagcctattgatagagggacagaga----cccttcaaaagagtgaattatgtagaatt 203  Q
    |||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||| |||||     |||| ||||||||| |||||||||||||    
T  29052215 aatgagcacatcactgaccgtgaccaaaaaataattcccagtaagcctattgatagagggatagagatgaggcctttaaaagagtggattatgtagaatt 29052314  T
Q  204 ggtcagttatagattag 220  Q
    |||||||||||||||||    
T  29052315 ggtcagttatagattag 29052331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 530 - 583
Target Start/End: Complemental strand, 4859138 - 4859085
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctc 583  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  4859138 gaaccccagaccttacatatattatgtattattcttatcaactgagttaagctc 4859085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 584
Target Start/End: Original strand, 12852204 - 12852262
Alignment:
Q  526 ttttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||||||||||| |||||||||| ||||| | || |||||||||||| ||||    
T  12852204 ttttgaaccccagatcttacatatattatgcattatccctaccaactgagttaacctca 12852262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 546 - 584
Target Start/End: Original strand, 51067916 - 51067954
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  51067916 atatattatgtattattcttaccaactgagttaagctca 51067954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 579
Target Start/End: Complemental strand, 35527973 - 35527924
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaa 579  Q
    |||||||| | ||||||||||||||| |||||| ||||||||||||||||    
T  35527973 gaaccccaaaccttatatatattatgcattatttttatcaactgagttaa 35527924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 584
Target Start/End: Complemental strand, 12214050 - 12213994
Alignment:
Q  528 ttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||||| |||  |||||||||||||| ||| ||||||||||| ||||||||    
T  12214050 ttgaaccccagaccttgcatatattatgtattgttcctatcaactgagctaagctca 12213994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 39949867 - 39949815
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagct 582  Q
    |||||||||| ||| ||||||||||| ||| |||||| |||||||||||||||    
T  39949867 gaaccccagaccttgtatatattatgcattgttcttaccaactgagttaagct 39949815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 585
Target Start/End: Original strand, 10356717 - 10356776
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattct-tatcaactgagttaagctcat 585  Q
    ||||||||||||| |||  |||||||||| ||| |||| |||||||||||||||||||||    
T  10356717 tttgaaccccagaccttgcatatattatgcatttttctctatcaactgagttaagctcat 10356776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 584
Target Start/End: Complemental strand, 35690252 - 35690213
Alignment:
Q  545 tatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  35690252 tatatattatgtattattcctaccaactgagttaagctca 35690213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Original strand, 4770634 - 4770688
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||| |||| ||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  4770634 gaacctcagaccttatatatatcatgcattgttcatatcaactgagttaagctca 4770688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 580
Target Start/End: Original strand, 4799164 - 4799198
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaag 580  Q
    |||||||||| ||||||||||||||||||||||||    
T  4799164 atatattatggattattcttatcaactgagttaag 4799198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 581
Target Start/End: Original strand, 4897171 - 4897225
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagc 581  Q
    |||||||||||||||||||||||||||||| || |   || ||||||||||||||    
T  4897171 tttgaaccccagatcttatatatattatgtcttgtctatagcaactgagttaagc 4897225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Complemental strand, 11410682 - 11410628
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||| |||| |||| ||||||||| ||| || |||||||||||||||||    
T  11410682 gaaccccagaccttacatattttatgtattgttcataccaactgagttaagctca 11410628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Original strand, 26256095 - 26256149
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||| ||||||  |||||||||| ||||  ||||||||||||||||||||||    
T  26256095 gaaccccggatcttgcatatattatgcattacccttatcaactgagttaagctca 26256149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Original strand, 41677596 - 41677650
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||| ||||||| |||||||||||||| | |||| |||||||| ||||||||    
T  41677596 gaaccccggatcttacatatattatgtattgtccttaccaactgagctaagctca 41677650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 580
Target Start/End: Original strand, 2884451 - 2884504
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaag 580  Q
    |||||||||| |||||| ||||||||||| ||| | | ||||||||||||||||    
T  2884451 tttgaacccccgatcttgtatatattatgcattgtccatatcaactgagttaag 2884504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 584
Target Start/End: Original strand, 47835730 - 47835775
Alignment:
Q  539 atcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||| ||||||||||||||| || |||||||||||||||| ||||    
T  47835730 atcttgtatatattatgtattgtttttatcaactgagttaaactca 47835775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 559
Target Start/End: Original strand, 24170143 - 24170175
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtatt 559  Q
    |||||||||||||||||| ||||||||||||||    
T  24170143 tttgaaccccagatcttacatatattatgtatt 24170175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 29052482 - 29052518
Alignment:
Q  359 tattgtggtagagaagcctttgggtaaaatgacatat 395  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  29052482 tattgtgttagagaagccattgggtaaaatgacatat 29052518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 34083392 - 34083336
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctcatg 586  Q
    |||||||| | |||| |||||||||| ||| |||||| || ||||||||||||||||    
T  34083392 gaaccccaaaccttacatatattatgcattgttcttaccatctgagttaagctcatg 34083336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 580
Target Start/End: Original strand, 15023007 - 15023049
Alignment:
Q  538 gatcttatatatattatgtattattcttatcaactgagttaag 580  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  15023007 gatcttatatatattatgtattattcttagcaactgagttaag 15023049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 11949666 - 11949723
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||  || || ||||||||||||||| ||||||||||||||| ||||||||    
T  11949666 tttgaaccccgaattttgtatatattatgtattgttcttatcaactgagctaagctca 11949723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 580
Target Start/End: Original strand, 12588843 - 12588896
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaag 580  Q
    |||||||| |||||||||||||| ||||||||| ||| || |||||||||||||    
T  12588843 tttgaacctcagatcttatatattttatgtattgttcataccaactgagttaag 12588896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 584
Target Start/End: Complemental strand, 18635584 - 18635531
Alignment:
Q  531 aaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||| ||| ||||||||||| ||| | ||||||||||||||||||||||    
T  18635584 aaccccagaccttgtatatattatgcattgtccttatcaactgagttaagctca 18635531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 18903761 - 18903818
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||||| |||| |||||||||| |||||| |||||||||||| ||| ||||    
T  18903761 tttgaaccccagaccttacatatattatgcattatttttatcaactgagctaaactca 18903818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 30135198 - 30135141
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||| | ||||| | |||||||||| ||||| ||||||||||||||||||||||    
T  30135198 tttgaacctcggatctgacatatattatgcattatccttatcaactgagttaagctca 30135141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 38939537 - 38939594
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||| ||||| | ||||||    
T  38939537 tttgaaccccagaccttatatatattatgcattatccttatcagctgagcttagctca 38939594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 589
Target Start/End: Complemental strand, 46779193 - 46779133
Alignment:
Q  529 tgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctcatggga 589  Q
    ||||||||| |||||| |||||||| | ||||||| |||||| ||||||||||||| ||||    
T  46779193 tgaaccccaaatcttacatatattacgcattattcctatcaattgagttaagctcacggga 46779133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 584
Target Start/End: Original strand, 7371570 - 7371608
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  7371570 atatattatgtattgtccttatcaactgagttaagctca 7371608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 4911604 - 4911660
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||| |||| |||| |||||||||| || || ||||||||||||||||||||||    
T  4911604 tttgaacctcagaccttacatatattatgcat-atccttatcaactgagttaagctca 4911660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 14202482 - 14202539
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||| || |||| |||||||||| ||||| |  |||||||||||||||||||    
T  14202482 tttgaaccccggaccttacatatattatgcattatccaaatcaactgagttaagctca 14202539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 9311933 - 9311990
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||| || |||||| |||||||||||||||||| || |||||||||||||||||    
T  9311933 tttgaacctcaaatcttacatatattatgtattattcataccaactgagttaagctca 9311990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 587
Target Start/End: Original strand, 10787642 - 10787695
Alignment:
Q  533 ccccagatcttatatatattatgtattattcttatcaactgagttaagctcatgg 587  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||||| |||||||    
T  10787642 ccccagaccttatatatattatgcattatt-ttatcaactgagttaacctcatgg 10787695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 20713153 - 20713104
Alignment:
Q  531 aaccccagatcttatatatattatgtattattcttatcaactgagttaag 580  Q
    ||||||| |||||||||||||||| |||||| |||||||| |||||||||    
T  20713153 aaccccatatcttatatatattatatattatccttatcaattgagttaag 20713104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 575
Target Start/End: Original strand, 8138461 - 8138509
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgag 575  Q
    ||||||||||||| |||| |||||||||| ||| |||||||||||||||    
T  8138461 tttgaaccccagaccttacatatattatgcattgttcttatcaactgag 8138509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 24248222 - 24248161
Alignment:
Q  528 ttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctcatggga 589  Q
    ||||||||| || |||| |||||||||||||||| |||| |||||| | |||||||| ||||    
T  24248222 ttgaaccccggaccttacatatattatgtattatccttaccaactgtgctaagctcacggga 24248161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 2445354 - 2445302
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagct 582  Q
    |||||||  ||||| ||||||||||| ||| ||| ||||||||||||||||||    
T  2445354 gaaccccgaatcttgtatatattatgcattgttcatatcaactgagttaagct 2445302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 40644688 - 40644631
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||||||||||||||||||||||| || ||||||  ||||||||||| ||||    
T  40644688 tttgaaccccagatcttatatatattatgtgttgttcttacaaactgagttaaactca 40644631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 591
Target Start/End: Original strand, 39100437 - 39100483
Alignment:
Q  545 tatatattatgtattattcttatcaactgagttaagctcatgggaca 591  Q
    ||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  39100437 tatatattatgcattgttcttatcaactgagttaagctcatgtgaca 39100483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 584
Target Start/End: Original strand, 3612186 - 3612242
Alignment:
Q  528 ttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||| || ||||||||||||||| ||||| | ||||||||||| ||||||||    
T  3612186 ttgaaccccggagcttatatatattatgcattatccatatcaactgagctaagctca 3612242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 584
Target Start/End: Complemental strand, 11574302 - 11574254
Alignment:
Q  536 cagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||| ||| ||||||||||| ||||| ||||||||||||||||||||||    
T  11574302 cagaccttgtatatattatgcattatccttatcaactgagttaagctca 11574254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 584
Target Start/End: Original strand, 38573594 - 38573633
Alignment:
Q  545 tatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  38573594 tatatattatgcattgttcttatcaactgagttaagctca 38573633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 584
Target Start/End: Original strand, 10843803 - 10843841
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||||||||||| || |||||||||||||||||    
T  10843803 atatattatgtattattcataccaactgagttaagctca 10843841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Complemental strand, 17588417 - 17588363
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||||||  |||||||||| ||| | |||| |||||||||||||||||    
T  17588417 gaaccccagatcttgcatatattatgcattgtccttaccaactgagttaagctca 17588363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Complemental strand, 22486738 - 22486684
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||| |||||  |||||||||| ||| |||||| |||||||||||||||||    
T  22486738 gaaccccaaatcttgcatatattatgcattgttcttaccaactgagttaagctca 22486684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Complemental strand, 23882885 - 23882831
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||| |||||| |||||||| ||| | ||||||||||||| ||||||||    
T  23882885 gaaccccagaccttataaatattatgaattgtccttatcaactgagctaagctca 23882831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 584
Target Start/End: Original strand, 47099057 - 47099095
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  47099057 atatattatgcattattcttatcaactgagctaagctca 47099095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Original strand, 53633623 - 53633677
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||| || |||| |||||||||| ||||| |||| |||||||||||||||||    
T  53633623 gaaccccggaccttacatatattatgcattatccttaccaactgagttaagctca 53633677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 580
Target Start/End: Original strand, 2186430 - 2186483
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaag 580  Q
    ||||||||||||| |||| |||||||||||||| | | || |||||||||||||    
T  2186430 tttgaaccccagaccttacatatattatgtattgtccataccaactgagttaag 2186483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 580
Target Start/End: Complemental strand, 21160110 - 21160057
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaag 580  Q
    |||||||||| || |||| |||||||||| ||||| | ||||||||||||||||    
T  21160110 tttgaacccccgaccttacatatattatgcattatccatatcaactgagttaag 21160057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 35126272 - 35126329
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||||||||||  |||||||||| ||||| | || |||||||||||| ||||    
T  35126272 tttgaaccccagatcttgcatatattatgcattatccctaccaactgagttaaactca 35126329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 579
Target Start/End: Complemental strand, 41151517 - 41151468
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaa 579  Q
    ||||||||||| | | ||||||||||||||||| ||| ||||||||||||    
T  41151517 gaaccccagatttaacatatattatgtattatttttaccaactgagttaa 41151468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 52340582 - 52340525
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||| |||||| |||||||||| ||| |||||| ||  |||||||||||||    
T  52340582 tttgaaccccaaatcttacatatattatgaatttttcttaacagttgagttaagctca 52340525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 54243443 - 54243386
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||| ||||||| |||||||||| ||  | |||| |||||||||||||||||    
T  54243443 tttgaaccccggatcttaaatatattatgcatcgtgcttaccaactgagttaagctca 54243386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 579
Target Start/End: Original strand, 1111844 - 1111896
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaa 579  Q
    ||||||||||||| |||  |||||||||||||| | | |||||||||||||||    
T  1111844 tttgaaccccagaccttgcatatattatgtattgtccctatcaactgagttaa 1111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 17755179 - 17755123
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctc 583  Q
    ||||||||||  | |||| |||||||||||||| ||| ||||||||||| |||||||    
T  17755179 tttgaaccccgaaccttacatatattatgtattgttcctatcaactgagctaagctc 17755123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 19056499 - 19056443
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctc 583  Q
    ||||||||||  | |||| |||||||||||||| ||| ||||||||||| |||||||    
T  19056499 tttgaaccccgaaccttacatatattatgtattgttcctatcaactgagctaagctc 19056443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 48673867 - 48673907
Alignment:
Q  544 atatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||||||||||| |||| |||||||||||| ||||    
T  48673867 atatatattatgtattatccttaccaactgagttaaactca 48673907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 579
Target Start/End: Complemental strand, 11764430 - 11764390
Alignment:
Q  539 atcttatatatattatgtattattcttatcaactgagttaa 579  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  11764430 atcttatatatattatgcattattcttatcaactgagttaa 11764390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 584
Target Start/End: Original strand, 27934863 - 27934917
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||||||| ||||||||||||||| | |||| |||||||| ||||||||    
T  27934863 gaaccccagatcttgtatatattatgtattgtccttaccaactgagctaagctca 27934917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 588
Target Start/End: Complemental strand, 10991586 - 10991539
Alignment:
Q  541 cttatatatattatgtattattcttatcaactgagttaagctcatggg 588  Q
    |||| |||||||||||||| | |||| |||||||||||||||||||||    
T  10991586 cttacatatattatgtattgtccttaccaactgagttaagctcatggg 10991539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 583
Target Start/End: Complemental strand, 11846437 - 11846399
Alignment:
Q  545 tatatattatgtattattcttatcaactgagttaagctc 583  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  11846437 tatatattatgtattattcctaccaactgagttaagctc 11846399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 585
Target Start/End: Original strand, 31935831 - 31935865
Alignment:
Q  551 ttatgtattattcttatcaactgagttaagctcat 585  Q
    |||||||||||||||||||||||||||||| ||||    
T  31935831 ttatgtattattcttatcaactgagttaagttcat 31935865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 584
Target Start/End: Complemental strand, 8775316 - 8775271
Alignment:
Q  539 atcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||| |||||||||||||||||| ||||||||||  ||||||||    
T  8775316 atcttacatatattatgtattattcctatcaactgacctaagctca 8775271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 10195665 - 10195722
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||| |||||||||  |||||||||| ||||| | ||||||||||| ||||||||    
T  10195665 tttgaactccagatcttgcatatattatgcattatccatatcaactgagctaagctca 10195722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 584
Target Start/End: Original strand, 16204824 - 16204877
Alignment:
Q  531 aaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||| |||  |||||||||| ||| | ||||||||||||||||||||||    
T  16204824 aaccccagaccttgcatatattatgcattgtccttatcaactgagttaagctca 16204877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 580
Target Start/End: Original strand, 17842715 - 17842768
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaag 580  Q
    ||||||| || ||||||| |||||||||| ||| |||||||||||| |||||||    
T  17842715 tttgaactccggatcttacatatattatgcattgttcttatcaactaagttaag 17842768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 41165493 - 41165436
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||| || | ||||||||||||||| ||||| | || |||||||||||||||||    
T  41165493 tttgaacctcataccttatatatattatgcattatccataacaactgagttaagctca 41165436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 546 - 586
Target Start/End: Original strand, 5168601 - 5168641
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaagctcatg 586  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  5168601 atatattatgcattatccctatcaactgagttaagctcatg 5168641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 548 - 584
Target Start/End: Complemental strand, 9718431 - 9718395
Alignment:
Q  548 atattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  9718431 atattatgcattgttcttatcaactgagttaagctca 9718395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 12619399 - 12619347
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagct 582  Q
    ||||||||||||||  |||||||||| |||||  |||||||||||| ||||||    
T  12619399 gaaccccagatcttgcatatattatgcattatcattatcaactgagctaagct 12619347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 574
Target Start/End: Original strand, 9727349 - 9727396
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactga 574  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  9727349 tttgaacccctgatcttatatatattatgcattattcttattaactga 9727396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 584
Target Start/End: Original strand, 19701350 - 19701404
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||| |||| |||||||||| ||||| ||||||||||||||||| ||||    
T  19701350 gaaccccagaccttacatatattatgcattatccttatcaactgagttaaactca 19701404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 575
Target Start/End: Original strand, 3757960 - 3758008
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgag 575  Q
    |||||||||||||||||| |||||||||| ||| ||| |||||||||||    
T  3757960 tttgaaccccagatcttacatatattatgcattgttcctatcaactgag 3758008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 584
Target Start/End: Complemental strand, 17913987 - 17913934
Alignment:
Q  531 aaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||| |||| | | |||||||||||| ||||||||||||| ||||||||    
T  17913987 aaccccagaccttacaaacattatgtattatccttatcaactgagctaagctca 17913934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 28440017 - 28439960
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||||| |||| |||||||||| |||||  ||||||||||| |||| ||||    
T  28440017 tttgaaccccagaccttacatatattatgcattatctttatcaactgaattaaactca 28439960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 29546951 - 29546895
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctc 583  Q
    ||||||||||||| |||  ||||||||| |||| | | |||||||||||||||||||    
T  29546951 tttgaaccccagaccttgcatatattatctattgtccctatcaactgagttaagctc 29546895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 584
Target Start/End: Original strand, 36623175 - 36623234
Alignment:
Q  525 tttttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||| | ||| |||  |||||||||| ||||||||||||||||||||||||||||    
T  36623175 tttttgaactctagaccttgcatatattatgcattattcttatcaactgagttaagctca 36623234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 583
Target Start/End: Complemental strand, 10045378 - 10045334
Alignment:
Q  539 atcttatatatattatgtattattcttatcaactgagttaagctc 583  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||    
T  10045378 atcttatatatattatgtattatctttaccaactgagttaagctc 10045334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 575
Target Start/End: Complemental strand, 16094115 - 16094067
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgag 575  Q
    |||||||||||||||||| |||||||||| ||||| | |||||||||||    
T  16094115 tttgaaccccagatcttacatatattatgcattatccctatcaactgag 16094067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 580
Target Start/End: Original strand, 42178826 - 42178861
Alignment:
Q  545 tatatattatgtattattcttatcaactgagttaag 580  Q
    |||||||||||||||||||||||||| |||||||||    
T  42178826 tatatattatgtattattcttatcaattgagttaag 42178861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Original strand, 23118057 - 23118111
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||| | |||| |||||||||| ||| | ||||||||||||||||||||||    
T  23118057 gaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagctca 23118111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 575
Target Start/End: Original strand, 2705522 - 2705567
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgag 575  Q
    ||||| |||| |||| |||||||||||||| |||||||||||||||    
T  2705522 gaacctcagaccttacatatattatgtattgttcttatcaactgag 2705567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 580
Target Start/End: Complemental strand, 5614823 - 5614770
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaag 580  Q
    |||||||||| || |||| |||||||||| ||||| | ||||||||||||||||    
T  5614823 tttgaacccccgaccttacatatattatgcattatccatatcaactgagttaag 5614770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 13864402 - 13864345
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||| || |||  |||||||||||||| ||| || |||||||||||||||||    
T  13864402 tttgaaccccggaccttgcatatattatgtattgttcataccaactgagttaagctca 13864345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 587
Target Start/End: Complemental strand, 31159468 - 31159427
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaagctcatgg 587  Q
    |||||||||||||| |  ||||||||||||||||||||||||    
T  31159468 atatattatgtattgtctttatcaactgagttaagctcatgg 31159427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 36170113 - 36170056
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||| || |||||| |||||||||| ||||||| || ||| |||||||||||||    
T  36170113 tttgaacctcatatcttacatatattatgcattattcctagcaattgagttaagctca 36170056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 24614753 - 24614696
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||| |||||  |||||||||||||| ||||||| ||||||||||||||| ||||    
T  24614753 tttgaactccagacattatatatattatgcattattcctatcaactgagttaaactca 24614696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 34000320 - 34000263
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||  | |||| |||||||||| ||||| ||||||||||||||||||||||    
T  34000320 tttgaaccccgaaccttacatatattatgcattatccttatcaactgagttaagctca 34000263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 585
Target Start/End: Complemental strand, 15015285 - 15015241
Alignment:
Q  541 cttatatatattatgtattattcttatcaactgagttaagctcat 585  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||    
T  15015285 cttacatatattatgcattgttcttatcaactgagttaagctcat 15015241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 584
Target Start/End: Original strand, 429200 - 429238
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  429200 atatattatgtattatccatatcaactgagttaagctca 429238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 580
Target Start/End: Original strand, 31723410 - 31723460
Alignment:
Q  530 gaaccccagatcttatatatattatgtattattcttatcaactgagttaag 580  Q
    ||||| ||||||||  ||||||||| |||| ||||||||||||||||||||    
T  31723410 gaacctcagatcttgcatatattatatattgttcttatcaactgagttaag 31723460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 583
Target Start/End: Complemental strand, 46856121 - 46856083
Alignment:
Q  545 tatatattatgtattattcttatcaactgagttaagctc 583  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  46856121 tatatattatgtattattcctatcaactgagttaggctc 46856083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 5458074 - 5458131
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||| |||||| |||  |||||||||| ||| ||||||||||||||| ||||||||    
T  5458074 tttgaatcccagaccttgcatatattatgcattgttcttatcaactgagctaagctca 5458131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 5526783 - 5526726
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||| ||||||||||||||||| ||| | | || |||||||| ||||||||    
T  5526783 tttgaaccccaaatcttatatatattatgcattgtccataccaactgagctaagctca 5526726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 25251568 - 25251511
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||| | ||||||||||||||| ||| ||  || |||||||||||||||||    
T  25251568 tttgaaccccaaaccttatatatattatgcattgtttataccaactgagttaagctca 25251511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 37230031 - 37230088
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    ||||||||||||| |||  |||||||||| ||| | |||| |||||||||||||||||    
T  37230031 tttgaaccccagaccttgcatatattatgcattttccttaccaactgagttaagctca 37230088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 43539107 - 43539164
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||||| || |||| |||||||||| ||| ||| ||||||||||| ||||||||    
T  43539107 tttgaaccccggaccttacatatattatgcattgttcctatcaactgagctaagctca 43539164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 546 - 586
Target Start/End: Complemental strand, 32855559 - 32855519
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaagctcatg 586  Q
    |||||||||| ||||||| |||||||||||||||| |||||    
T  32855559 atatattatgcattattcatatcaactgagttaagttcatg 32855519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 582
Target Start/End: Original strand, 42954 - 42990
Alignment:
Q  546 atatattatgtattattcttatcaactgagttaagct 582  Q
    |||||||||| ||||||||||||||||||||||||||    
T  42954 atatattatgcattattcttatcaactgagttaagct 42990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 584
Target Start/End: Complemental strand, 709 - 652
Alignment:
Q  527 tttgaaccccagatcttatatatattatgtattattcttatcaactgagttaagctca 584  Q
    |||||||| || ||||| ||||| |||||| ||||||||| ||| |||||||||||||    
T  709 tttgaacctcaaatcttgtatattttatgtcttattcttaccaaatgagttaagctca 652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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