View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5501-Insertion-3 (Length: 596)
Name: NF5501-Insertion-3
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5501-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 68 - 594
Target Start/End: Original strand, 38129893 - 38130419
Alignment:
| Q |
68 |
ggttatgatttgttttagatgataattttcaaacaagcgtacagtaaaaagatcactaatacgtacatgggtatttcatgcctgtaatttaatcgaagcc |
167 |
Q |
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| T |
38129893 |
ggttatgatttgttttagataataattttcaaacaagcatacagtaaaaagatcactaatacgtacatgggtatttcatgcctgtaatttaattgaagcc |
38129992 |
T |
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| Q |
168 |
ctagaggaaattgaacttgaggagctacttgagctgcaggaacaagaggtatttgaggtactggatggaacacattagtgtagtcccacgaggttctgtt |
267 |
Q |
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| T |
38129993 |
ctagaggaaattgaacttgaggagctacttgagctgcaggaacaagaggtatttgaggtactggatggaacacattagtgtagtcccacgaggttctgtt |
38130092 |
T |
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| Q |
268 |
aacaggagaaatttgaagctcttcctcaaatctatttctcatggactcaagagattgcctaaccaggatgtacccaagatggggatcaagctggatactg |
367 |
Q |
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| T |
38130093 |
aacaggagaaatctgaagctcttcctcaaatctatttctcatggactcaagagattgcctaaccaggatgtacccaagatggggatcaagctggatactg |
38130192 |
T |
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| Q |
368 |
cggatattgcccctatatctcacaacgccgtggaacaaggcaaacatctccaagaatgtccaagaaattctgaaagaagatatgaaaacattattgtaaa |
467 |
Q |
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| T |
38130193 |
cggatattgcccctatatctcacaacgccgtggaacaaggcaaacatctccaagaatgtccaagaaattctgaaagaagatatgaaaacattattgtaaa |
38130292 |
T |
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| Q |
468 |
aaccttaatgtccaagaaattctcaaagaagatatgaaaacattattgcaaaaacttttaaaatttaggaggaattgttaaagaacttacaaatgcattc |
567 |
Q |
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| T |
38130293 |
aaccttaatgtccaagaaattctcaaagaagatatgaaaacattattgcaaaaacttttaaaatttaggaggagttgttaaagaacttacaaatgcattc |
38130392 |
T |
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| Q |
568 |
ggagaagatggtcaaagttcagccctc |
594 |
Q |
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| T |
38130393 |
ggagaagatggtcaaagttcatccctc |
38130419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 38129834 - 38129868
Alignment:
| Q |
8 |
catataattccacgtaggtccagttttccctgaac |
42 |
Q |
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| T |
38129834 |
catataattccacgtaggtccagttttccctgaac |
38129868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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