View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5501-Insertion-5 (Length: 414)
Name: NF5501-Insertion-5
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5501-Insertion-5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 35685999 - 35686407
Alignment:
| Q |
8 |
tgttcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggaga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
35685999 |
tgttcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgaaaactttaagggaga |
35686098 |
T |
|
| Q |
108 |
tgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagatttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35686099 |
tgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagatttatgatgccggtacatagaacaagttttaaggatgtctacttggtttat |
35686198 |
T |
|
| Q |
208 |
gaactcatggatacagatcttcatcagattataaagtctgctcagtcactttctaatgatatttgcagata--ttttgtttcgggtactaattagtcttg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35686199 |
gaactcatggatacagatcttcatcagattataaagtccgctcagtcactttctaatgatatttgcagatattttttgtttcgggtactaattagtcttg |
35686298 |
T |
|
| Q |
306 |
ttatgatatttcaaatatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccact |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35686299 |
ttatgatatttcaaatatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccact |
35686398 |
T |
|
| Q |
406 |
ctgcaaatg |
414 |
Q |
| |
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||||||||| |
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| T |
35686399 |
ctgcaaatg |
35686407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 35680741 - 35681033
Alignment:
| Q |
11 |
tcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatga |
110 |
Q |
| |
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||||| |||||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||| |||||| |||||||||||||| |
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| T |
35680741 |
tcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattcagtgagaactttaagggagatga |
35680840 |
T |
|
| Q |
111 |
tgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatga |
209 |
Q |
| |
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|||||||||||||||||||||| || |||||||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35680841 |
tgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaagttttaaggatgtctacttggtttatga |
35680940 |
T |
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| Q |
210 |
actcatggatacagatcttcatcagattataaagtctgctcagtcactttctaatgatatttgcagatatt--ttgtttcgggtactaattag |
300 |
Q |
| |
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||||||||| |||||||||||||| ||||| |||||| ||||| |||||||||||||| ||||| ||||| ||||||| |||||||||||| |
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| T |
35680941 |
actcatggaaacagatcttcatcaaattatcaagtctactcagccactttctaatgatcattgcaaatatttcttgtttcaggtactaattag |
35681033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 23669710 - 23669475
Alignment:
| Q |
11 |
tcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatga |
110 |
Q |
| |
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||||| ||||||| |||||| || |||||||| ||||| ||||||||||||||| | |||||| |||||| |||| || | |||| |||||||||||||| |
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| T |
23669710 |
tcatccatcaatatggataccaacgagaaagtggcaatcaagaagattagcaacgtatttgatgattgtggtgatgcactcagaactttaagggagatga |
23669611 |
T |
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| Q |
111 |
tgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatga |
209 |
Q |
| |
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| ||||| || || |||| ||||| |||||||| | |||||||| ||||||| || | || ||||||||||||||||||||||||||||| ||||| |
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| T |
23669610 |
agttgcttcgacatgttcggcatgagaatgtgatttctctgaaagatgttatgataccagaccaaagaacaagttttaaggatgtctacttggtctatga |
23669511 |
T |
|
| Q |
210 |
actcatggatacagatcttcatcagattataaagtc |
245 |
Q |
| |
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||||||||||| ||| ||||||| ||||| ||||| |
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| T |
23669510 |
actcatggataaagaccttcatcgtattatcaagtc |
23669475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 24041986 - 24041751
Alignment:
| Q |
11 |
tcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatga |
110 |
Q |
| |
|
||||| ||||||| |||||| || |||||||| ||||| ||||||||||||||| | |||||| |||||| |||| || | |||| |||||||||||||| |
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| T |
24041986 |
tcatccatcaatatggataccaacgagaaagtggcaatcaagaagattagcaacgtatttgatgattgtggtgatgcactcagaactttaagggagatga |
24041887 |
T |
|
| Q |
111 |
tgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatga |
209 |
Q |
| |
|
| ||||| || || |||| ||||| |||||||| | |||||||| ||||||| || | || ||||||||||||||||||||||||||||| ||||| |
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| T |
24041886 |
agttgcttcgacatgttcggcatgagaatgtgatttctctgaaagatgttatgataccagaccaaagaacaagttttaaggatgtctacttggtctatga |
24041787 |
T |
|
| Q |
210 |
actcatggatacagatcttcatcagattataaagtc |
245 |
Q |
| |
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||||||||||| ||| ||||||| ||||| ||||| |
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| T |
24041786 |
actcatggataaagaccttcatcgtattatcaagtc |
24041751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 23685392 - 23685171
Alignment:
| Q |
11 |
tcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatga |
110 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||| ||||| |||||||||||||| | |||||| |||||| ||| || |||||| |||||||||||||| |
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|
| T |
23685392 |
tcatccatcaatatggataccaatgagaaagtggcaatcaagaagattagcaatgtatttgatgattgtggtgacgcactgagaactttaagggagatga |
23685293 |
T |
|
| Q |
111 |
tgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatga |
209 |
Q |
| |
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| |||||||| || ||| ||||| |||||||| | | |||||||| ||||||| |||| || |||||||||||||||||| |||||||||| ||||| |
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| T |
23685292 |
agttgcttagacat-gtcggcatgagaatgtgattgctctgaaagatgttatgataccggaccaaagaacaagttttaaggatatctacttggtctatga |
23685194 |
T |
|
| Q |
210 |
actcatggatacagatcttcatc |
232 |
Q |
| |
|
| ||||||||| ||||||||||| |
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|
| T |
23685193 |
attcatggataaagatcttcatc |
23685171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 24057629 - 24057408
Alignment:
| Q |
11 |
tcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatga |
110 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||| ||||| |||||||||||||| | |||||| |||||| ||| || |||||| |||||||||||||| |
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| T |
24057629 |
tcatccatcaatatggataccaatgagaaagtggcaatcaagaagattagcaatgtatttgatgattgtggtgacgcactgagaactttaagggagatga |
24057530 |
T |
|
| Q |
111 |
tgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaagttttaaggatgtctacttggtttatga |
209 |
Q |
| |
|
| |||||||| || ||| ||||| |||||||| | | |||||||| ||||||| |||| || |||||||||||||||||| |||||||||| ||||| |
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|
| T |
24057529 |
agttgcttagacat-gtcggcatgagaatgtgattgctctgaaagatgttatgataccggaccaaagaacaagttttaaggatatctacttggtctatga |
24057431 |
T |
|
| Q |
210 |
actcatggatacagatcttcatc |
232 |
Q |
| |
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| ||||||||| ||||||||||| |
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| T |
24057430 |
attcatggataaagatcttcatc |
24057408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 23674435 - 23674227
Alignment:
| Q |
17 |
atcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgc |
116 |
Q |
| |
|
|||| |||||| || ||||||||||| ||||| |||||||||||||| | |||||||||| ||||| || | |||| |||| ||||||||| ||| | |
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|
| T |
23674435 |
atcagtaaggagaccaatgagaaagtcgcaatgaagaagattagcaatgtatttgataatttgattgatgcactaagaactttatgggagatgaagcttc |
23674336 |
T |
|
| Q |
117 |
ttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaa---gttttaaggatgtctacttggtttatgaact |
212 |
Q |
| |
|
||||| || |||| || || ||||||||| |||||||||| ||||||| | | || | ||||| |||||||||||||||||||||| |||||||| |
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|
| T |
23674335 |
ttagacatgttcggcacgagaatgtgatcactttgaaagatgttatgatactagatcaaaaaacaacatgttttaaggatgtctacttggtctatgaact |
23674236 |
T |
|
| Q |
213 |
catggatac |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
23674235 |
aatggatac |
23674227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 24046711 - 24046503
Alignment:
| Q |
17 |
atcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgagaagtttaagggagatgatgctgc |
116 |
Q |
| |
|
|||| |||||| || ||||||||||| ||||| |||||||||||||| | |||||||||| ||||| || | |||| |||| ||||||||| ||| | |
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| T |
24046711 |
atcagtaaggagaccaatgagaaagtcgcaatgaagaagattagcaatgtatttgataatttgattgatgcactaagaactttatgggagatgaagcttc |
24046612 |
T |
|
| Q |
117 |
ttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtgcatagaacaa---gttttaaggatgtctacttggtttatgaact |
212 |
Q |
| |
|
||||| || |||| || || ||||||||| |||||||||| ||||||| | | || | ||||| |||||||||||||||||||||| |||||||| |
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|
| T |
24046611 |
ttagacatgttcggcacgagaatgtgatcactttgaaagatgttatgatactagatcaaaaaacaacatgttttaaggatgtctacttggtctatgaact |
24046512 |
T |
|
| Q |
213 |
catggatac |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
24046511 |
aatggatac |
24046503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 23669268 - 23669175
Alignment:
| Q |
318 |
aaatatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaat |
413 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||||||||||||| || |||| | |||||| || |||||||| ||||||||| |
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|
| T |
23669268 |
aaatatttgcttatttaacatatccttgt--ttgttactaatcataaactcttatttcagttacttcaaggtcttaattatctccattctgcaaat |
23669175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 24041544 - 24041451
Alignment:
| Q |
318 |
aaatatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaat |
413 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||||||||||||| || |||| | |||||| || |||||||| ||||||||| |
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|
| T |
24041544 |
aaatatttgcttatttaacatatccttgt--ttgttactaatcataaactcttatttcagttacttcaaggtcttaattatctccattctgcaaat |
24041451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 52548627 - 52548711
Alignment:
| Q |
183 |
ttttaaggatgtctacttggtttatgaactcatggatacagatcttcatcagattataaagtctgctcagtcactttctaatgat |
267 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||| || ||| | ||||||||||| |||||| | || |||||||||||||| |
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| T |
52548627 |
ttttaaggatgtttatcttgtttatgaactcatggacaccgatttgcatcagattattaagtcttcccaagcactttctaatgat |
52548711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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